FC932539

Overview
NameFC932539
Unique NameFC932539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_CAUCN (50S ribosomal protein L2 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rplB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 64/206 (31.07%), Postives = 103/206 (50.00%), Query Frame = 2
Query:   68 RKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            R G G I     R   A   +R +DF         VV+ + +D  R A +A ++++   +   I    +A + +  G  +   +   +  GN  PL ++P GT+I N+E K    G + R++G Y  ++G   + G  +++L SG  +++ +T    VG V+     ++ L KAGR++H         P  RGVAMNPVDHPHGGG
Sbjct:   43 RGGNGRI-AVRFRGGGAKRLYRLVDFKRRKQGVATVVR-LEYDPNRTAFIALIKYQADGELAYI----LAPQRLKAGDEVVTAEKVDVKPGNASPLRTLPIGTIIHNIELKPAKGGQIARSAGAYAQLVGR--DAGYAQIRLNSGELRMVLDTCMATVGAVSNPDHMNQNLGKAGRSRH-----MGRRPHVRGVAMNPVDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RK2_NANDO (50S ribosomal protein L2, chloroplastic OS=Nandina domestica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 71/208 (34.13%), Postives = 96/208 (46.15%), Query Frame = 2
Query:   71 KGRGS--IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKT-RVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            KGR +  I TA  R       +R +DF        G +  I +D  R A +  + +    K        +   G   G  I +G    +++GN LPL  MP GT I N+E   G  G L R +G    +I    ++GK+  +KLPSG  ++I       VG V   G   K L +AG    ++  KR   P  RGV MNPVDHPHGGG
Sbjct:   39 KGRNARGIITARHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEK-----RYILHPRGAIIGDTIVSGTEVPISMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA---KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAG--SKRWLGKR---PVVRGVVMNPVDHPHGGG 233          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RK2B_LIRTU (50S ribosomal protein L2-B, chloroplastic OS=Liriodendron tulipifera GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 71/208 (34.13%), Postives = 96/208 (46.15%), Query Frame = 2
Query:   71 KGRGS--IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKT-RVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            KGR +  I TA  R       +R +DF      T G +  I +D  R A +  + +    K        +   G   G  I +G    +++GN LPL  MP GT I N+E   G  G L R +G    +I    ++GK+  ++LPSG  ++I       VG V   G   K L   GRA  K  + +   P  RGV MNPVDHPHGGG
Sbjct:   39 KGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDTSGRIVTIEYDPNRNAYICLIHYGDGEK-----RYILHPRGAIIGDTIVSGTEVPISMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA---KEGKSATLRLPSGEVRLISKNCSATVGQVGNVGVNQKSL---GRAGSKCWLGKR--PVVRGVVMNPVDHPHGGG 233          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_ZYMMO (50S ribosomal protein L2 OS=Zymomonas mobilis GN=rplB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 61/191 (31.94%), Postives = 94/191 (49.21%), Query Frame = 2
Query:  125 QFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSW----PKTRGVAMNPVDHPHGGG 685
            ++R +DF          V+ I +D  R A +A V+    Y+ K ++   +A + +  G  I A + A +  GN + +   P GT++ N+E K    G L R +G Y  ++G   + G   ++L SG ++ I++     VG V+     ++   KAG         RN W    P TRGVA NPVDHPHGGG
Sbjct:   61 KYRLVDFKRRKWDMPATVQRIEYDPNRSAFIALVE----YEDKTLSY-ILAPQRLGVGDSIVASRKADVKPGNAMEIGQAPLGTIVHNIELKPSKGGQLARAAGAYAQIVGR--DKGMVMIRLNSGEQRYIRSDCMVTVGAVSNSDNANQNFAKAG---------RNRWLGRRPLTRGVAKNPVDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STAS1 (50S ribosomal protein L2 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rplB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 66/192 (34.38%), Postives = 95/192 (49.48%), Query Frame = 2
Query:  125 QFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSW----PKTRGVAMNPVDHPHGGG 685
            Q+R +DF          V  I +D  R A +A + +    K        IA + +  GQ + +G+ A + VGN LPL  +P GTVI N+E K G  G + R++G    V+G   ++GK   ++L SG  ++I +T R  +G V   G     L+  G+A       R+ W    P  RG  MNP DHPHGGG
Sbjct:   61 QYRVIDFKRNKDGINAKVDSIQYDPNRSANIALLVYADGEK-----RYIIAPKNLKVGQVLESGEEADIKVGNALPLQFIPVGTVIHNIELKPGKGGQIARSAGASAQVLG---KEGKYVLIRLRSGEVRMILSTCRATIGQV---GNIQHELVNVGKA------GRSRWKGIRPTVRGSVMNPNDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_RUBXD (50S ribosomal protein L2 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 59/187 (31.55%), Postives = 89/187 (47.59%), Query Frame = 2
Query:  125 QFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            ++R +DF          V  I +D  R A +A + +    K        +A   +  G  + +G  A + VGN LPLA++P GT +  VE + G    L R++G    +I    E     ++LPSG ++ ++   R  VG+V      +    KAGR +H   ++    P  RG  MNPVDHPHGGG
Sbjct:   61 RYRIIDFKRNKDGVPATVAAIEYDPNRSANIALLHYHDGEK-----RYILAPRNLTVGSVVMSGPEAEVDVGNALPLANIPVGTTVHAVELEPGRGAQLARSAGTSAQIIAR--EGNLVTLRLPSGERRRVRAECRATVGVVGNQSHQNVRWGKAGRKRH-LGIR----PTVRGTVMNPVDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_RHOPB (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 58/187 (31.02%), Postives = 96/187 (51.34%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFI-ANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VV+ + +D  R A +A +++         T+ +I A + +  G  + AG    +  GN++PL +MP GT++ NVE K G  G + R++G Y  ++G + +     V+L SG ++++       +G V+     +  + KAGR++          P  RGV MNPVDHPHGGG
Sbjct:   62 YRIVDFKRTKVDMPAVVERLEYDPNRTAFIALIKYTDG------TQAYILAPQRLAVGDTVLAGAYVDVKPGNVMPLGNMPIGTIVHNVELKIGKGGQIARSAGTYAQLVGRDHD--YVIVRLNSGEQRLVHGRCTATIGAVSNPDHMNISIGKAGRSRW-----LGRKPHNRGVTMNPVDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_PERMH (50S ribosomal protein L2 OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=rplB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 66/190 (34.74%), Postives = 91/190 (47.89%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSW----PKTRGVAMNPVDHPHGGG 685
            +R +DF          V  I +D  R A +A + +    K  +I       EG+  G  + AG +A + VGN LPL ++P GT I N+E   G  G L R +G    ++G   +    +V+LPSG  ++I       VG V   G  +  L+K G+A       R  W    P  RG AMNPVDHPHGGG
Sbjct:   62 YRIIDFKRDKWGVPAKVAAIEYDPNRSARIALLHYADGEKRYIIWP-----EGLKVGDTVVAGPDAEIKVGNALPLENIPVGTFIHNIELTPGKGGQLVRAAGMSAQILGR--QGDYVQVRLPSGEIRLIHKKCMATVGTV---GLAEHELIKLGKA------GRARWLGIRPTVRGTAMNPVDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_PEDPA (50S ribosomal protein L2 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rplB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 65/189 (34.39%), Postives = 97/189 (51.32%), Query Frame = 2
Query:  125 QFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRA-KHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            Q+R +DF          VK I +D  R A +A + +    K        IA +G+  G  + +G  A + VGN LPL  +P GTVI N+E K G  G L R++G    ++G   ++GK   ++L S   +++  T R  +G V   G  +  L+  G+A + ++A +R   P  RG  MNP DHPHGGG
Sbjct:   61 QYRIIDFKRIKDDVPATVKAIEYDPNRTANIALLVYADGVK-----SYIIAPKGLKVGDKVQSGSEADIKVGNALPLKDIPVGTVIHNIELKPGKGGQLVRSAGASAQLLG---KEGKYVLIRLASSEVRMVLATNRATIGAV---GNEEHELVNVGKAGRTRYAGQR---PHVRGSVMNPNDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_NAUPA (50S ribosomal protein L2 OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=rplB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 68/212 (32.08%), Postives = 107/212 (50.47%), Query Frame = 2
Query:   65 QRKGRGSIFTANTRLNKAPAQ--FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTV--GNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRV-KLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            Q+ GR ++    +R  +A A+  +R +DF        G V  + +D  R   +  + +    K        I  EG+  G  + A + A L +  GN + L ++P GTV+ NVE K G  G + R++GN   ++G    +GK  + +LPSG  + I       +G V      +  + KAGR++H   ++    P+TRG+AMNPVDHPHGGG
Sbjct:   39 QKAGRNNLGRITSRHREAGAKKLYRIIDFKRNKFGVPGKVATVEYDPYRNCRICLISYVDGDK-----RYIIQPEGLKVGDTVMAAE-AGLDIKPGNAMKLKNIPVGTVVHNVEMKPGKGGQIARSAGNSCQIMGR---EGKYVILRLPSGEMRYILGECMATIGTVGNAEYQNITIGKAGRSRH-LGIR----PQTRGIAMNPVDHPHGGG 236          
The following BLAST results are available for this feature:
BLAST of FC932539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_CAUCN3.751e-1931.0750S ribosomal protein L2 OS=Caulobacter crescentus... [more]
RK2_NANDO3.751e-1934.1350S ribosomal protein L2, chloroplastic OS=Nandina... [more]
RK2B_LIRTU3.751e-1934.1350S ribosomal protein L2-B, chloroplastic OS=Lirio... [more]
RL2_ZYMMO4.899e-1931.9450S ribosomal protein L2 OS=Zymomonas mobilis GN=r... [more]
RL2_STAS14.899e-1934.3850S ribosomal protein L2 OS=Staphylococcus saproph... [more]
RL2_RUBXD4.899e-1931.5550S ribosomal protein L2 OS=Rubrobacter xylanophil... [more]
RL2_RHOPB4.899e-1931.0250S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_PERMH4.899e-1934.7450S ribosomal protein L2 OS=Persephonella marina (... [more]
RL2_PEDPA4.899e-1934.3950S ribosomal protein L2 OS=Pediococcus pentosaceu... [more]
RL2_NAUPA4.899e-1932.0850S ribosomal protein L2 OS=Nautilia profundicola ... [more]

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Properties
Property NameValue
Genbank descriptionC34209F10EF PostHarveN Citrus clementina cDNA clone C34209F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932539 ID=FC932539; Name=FC932539; organism=Citrus clementina; type=EST; length=699bp
GAACTCGTCAACGACAAGCCTATATCACTTCGAGACAGTCGCCATGGGTC
GTGTCATCCGCAACCAGAGGAAGGGTCGTGGCTCCATTTTCACGGCCAAC
ACCCGCCTGAACAAGGCCCCTGCCCAATTCCGGACCCTCGACTTCGCTGA
GGCTCACGGTTACACCCGTGGTGTCGTCAAGGAGATCATCCACGATGCCG
GCCGTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGCCACCCCTACAAGTTC
AAGATGATCACCGAGACTTTCATCGCCAACGAGGGCATGTACACCGGCCA
GTTCATCTACGCCGGTAAGAACGCTGCCCTGACCGTCGGCAACATTCTTC
CTCTCGCCTCCATGCCCGAGGGTACCGTCATCACCAACGTCGAGGAGAAG
GCTGGTGACCGTGGTGCGCTTGGCCGTACCTCCGGTAACTACGTTACTGT
TATTGGCCACAACCCCGAGGATGGCAAGACCCGTGTCAAGCTCCCCTCCG
GTGCCAAGAAGGTCATCAAGAACACCGCTCGCGGTATGGTTGGTATCGTT
GCCGGTGGTGGCCGTACCGACAAGCCTTTGCTCAAGGCTGGTCGTGCCAA
GCACAAGTTCGCCGTCAAGCGCAACTCTTGGCCCAAGACTCGTGGTGTTG
CCATGAACCCCGTCGATCACCCTCACGGTGGTGGNTACCACCAGCACAT
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