FC932539
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_CAUCN (50S ribosomal protein L2 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rplB PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19 Identity = 64/206 (31.07%), Postives = 103/206 (50.00%), Query Frame = 2 Query: 68 RKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685 R G G I R A +R +DF VV+ + +D R A +A ++++ + I +A + + G + + + GN PL ++P GT+I N+E K G + R++G Y ++G + G +++L SG +++ +T VG V+ ++ L KAGR++H P RGVAMNPVDHPHGGG Sbjct: 43 RGGNGRI-AVRFRGGGAKRLYRLVDFKRRKQGVATVVR-LEYDPNRTAFIALIKYQADGELAYI----LAPQRLKAGDEVVTAEKVDVKPGNASPLRTLPIGTIIHNIELKPAKGGQIARSAGAYAQLVGR--DAGYAQIRLNSGELRMVLDTCMATVGAVSNPDHMNQNLGKAGRSRH-----MGRRPHVRGVAMNPVDHPHGGG 235
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RK2_NANDO (50S ribosomal protein L2, chloroplastic OS=Nandina domestica GN=rpl2-A PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19 Identity = 71/208 (34.13%), Postives = 96/208 (46.15%), Query Frame = 2 Query: 71 KGRGS--IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKT-RVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685 KGR + I TA R +R +DF G + I +D R A + + + K + G G I +G +++GN LPL MP GT I N+E G G L R +G +I ++GK+ +KLPSG ++I VG V G K L +AG ++ KR P RGV MNPVDHPHGGG Sbjct: 39 KGRNARGIITARHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEK-----RYILHPRGAIIGDTIVSGTEVPISMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA---KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAG--SKRWLGKR---PVVRGVVMNPVDHPHGGG 233
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RK2B_LIRTU (50S ribosomal protein L2-B, chloroplastic OS=Liriodendron tulipifera GN=rpl2-B PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19 Identity = 71/208 (34.13%), Postives = 96/208 (46.15%), Query Frame = 2 Query: 71 KGRGS--IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKT-RVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685 KGR + I TA R +R +DF T G + I +D R A + + + K + G G I +G +++GN LPL MP GT I N+E G G L R +G +I ++GK+ ++LPSG ++I VG V G K L GRA K + + P RGV MNPVDHPHGGG Sbjct: 39 KGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDTSGRIVTIEYDPNRNAYICLIHYGDGEK-----RYILHPRGAIIGDTIVSGTEVPISMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA---KEGKSATLRLPSGEVRLISKNCSATVGQVGNVGVNQKSL---GRAGSKCWLGKR--PVVRGVVMNPVDHPHGGG 233
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_ZYMMO (50S ribosomal protein L2 OS=Zymomonas mobilis GN=rplB PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19 Identity = 61/191 (31.94%), Postives = 94/191 (49.21%), Query Frame = 2 Query: 125 QFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSW----PKTRGVAMNPVDHPHGGG 685 ++R +DF V+ I +D R A +A V+ Y+ K ++ +A + + G I A + A + GN + + P GT++ N+E K G L R +G Y ++G + G ++L SG ++ I++ VG V+ ++ KAG RN W P TRGVA NPVDHPHGGG Sbjct: 61 KYRLVDFKRRKWDMPATVQRIEYDPNRSAFIALVE----YEDKTLSY-ILAPQRLGVGDSIVASRKADVKPGNAMEIGQAPLGTIVHNIELKPSKGGQLARAAGAYAQIVGR--DKGMVMIRLNSGEQRYIRSDCMVTVGAVSNSDNANQNFAKAG---------RNRWLGRRPLTRGVAKNPVDHPHGGG 235
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STAS1 (50S ribosomal protein L2 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rplB PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19 Identity = 66/192 (34.38%), Postives = 95/192 (49.48%), Query Frame = 2 Query: 125 QFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSW----PKTRGVAMNPVDHPHGGG 685 Q+R +DF V I +D R A +A + + K IA + + GQ + +G+ A + VGN LPL +P GTVI N+E K G G + R++G V+G ++GK ++L SG ++I +T R +G V G L+ G+A R+ W P RG MNP DHPHGGG Sbjct: 61 QYRVIDFKRNKDGINAKVDSIQYDPNRSANIALLVYADGEK-----RYIIAPKNLKVGQVLESGEEADIKVGNALPLQFIPVGTVIHNIELKPGKGGQIARSAGASAQVLG---KEGKYVLIRLRSGEVRMILSTCRATIGQV---GNIQHELVNVGKA------GRSRWKGIRPTVRGSVMNPNDHPHGGG 235
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_RUBXD (50S ribosomal protein L2 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplB PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19 Identity = 59/187 (31.55%), Postives = 89/187 (47.59%), Query Frame = 2 Query: 125 QFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685 ++R +DF V I +D R A +A + + K +A + G + +G A + VGN LPLA++P GT + VE + G L R++G +I E ++LPSG ++ ++ R VG+V + KAGR +H ++ P RG MNPVDHPHGGG Sbjct: 61 RYRIIDFKRNKDGVPATVAAIEYDPNRSANIALLHYHDGEK-----RYILAPRNLTVGSVVMSGPEAEVDVGNALPLANIPVGTTVHAVELEPGRGAQLARSAGTSAQIIAR--EGNLVTLRLPSGERRRVRAECRATVGVVGNQSHQNVRWGKAGRKRH-LGIR----PTVRGTVMNPVDHPHGGG 235
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_RHOPB (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplB PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19 Identity = 58/187 (31.02%), Postives = 96/187 (51.34%), Query Frame = 2 Query: 128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFI-ANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685 +R +DF VV+ + +D R A +A +++ T+ +I A + + G + AG + GN++PL +MP GT++ NVE K G G + R++G Y ++G + + V+L SG ++++ +G V+ + + KAGR++ P RGV MNPVDHPHGGG Sbjct: 62 YRIVDFKRTKVDMPAVVERLEYDPNRTAFIALIKYTDG------TQAYILAPQRLAVGDTVLAGAYVDVKPGNVMPLGNMPIGTIVHNVELKIGKGGQIARSAGTYAQLVGRDHD--YVIVRLNSGEQRLVHGRCTATIGAVSNPDHMNISIGKAGRSRW-----LGRKPHNRGVTMNPVDHPHGGG 235
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_PERMH (50S ribosomal protein L2 OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=rplB PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19 Identity = 66/190 (34.74%), Postives = 91/190 (47.89%), Query Frame = 2 Query: 128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSW----PKTRGVAMNPVDHPHGGG 685 +R +DF V I +D R A +A + + K +I EG+ G + AG +A + VGN LPL ++P GT I N+E G G L R +G ++G + +V+LPSG ++I VG V G + L+K G+A R W P RG AMNPVDHPHGGG Sbjct: 62 YRIIDFKRDKWGVPAKVAAIEYDPNRSARIALLHYADGEKRYIIWP-----EGLKVGDTVVAGPDAEIKVGNALPLENIPVGTFIHNIELTPGKGGQLVRAAGMSAQILGR--QGDYVQVRLPSGEIRLIHKKCMATVGTV---GLAEHELIKLGKA------GRARWLGIRPTVRGTAMNPVDHPHGGG 235
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_PEDPA (50S ribosomal protein L2 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rplB PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19 Identity = 65/189 (34.39%), Postives = 97/189 (51.32%), Query Frame = 2 Query: 125 QFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRA-KHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685 Q+R +DF VK I +D R A +A + + K IA +G+ G + +G A + VGN LPL +P GTVI N+E K G G L R++G ++G ++GK ++L S +++ T R +G V G + L+ G+A + ++A +R P RG MNP DHPHGGG Sbjct: 61 QYRIIDFKRIKDDVPATVKAIEYDPNRTANIALLVYADGVK-----SYIIAPKGLKVGDKVQSGSEADIKVGNALPLKDIPVGTVIHNIELKPGKGGQLVRSAGASAQLLG---KEGKYVLIRLASSEVRMVLATNRATIGAV---GNEEHELVNVGKAGRTRYAGQR---PHVRGSVMNPNDHPHGGG 235
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_NAUPA (50S ribosomal protein L2 OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=rplB PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19 Identity = 68/212 (32.08%), Postives = 107/212 (50.47%), Query Frame = 2 Query: 65 QRKGRGSIFTANTRLNKAPAQ--FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTV--GNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRV-KLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685 Q+ GR ++ +R +A A+ +R +DF G V + +D R + + + K I EG+ G + A + A L + GN + L ++P GTV+ NVE K G G + R++GN ++G +GK + +LPSG + I +G V + + KAGR++H ++ P+TRG+AMNPVDHPHGGG Sbjct: 39 QKAGRNNLGRITSRHREAGAKKLYRIIDFKRNKFGVPGKVATVEYDPYRNCRICLISYVDGDK-----RYIIQPEGLKVGDTVMAAE-AGLDIKPGNAMKLKNIPVGTVVHNVEMKPGKGGQIARSAGNSCQIMGR---EGKYVILRLPSGEMRYILGECMATIGTVGNAEYQNITIGKAGRSRH-LGIR----PQTRGIAMNPVDHPHGGG 236 The following BLAST results are available for this feature:
BLAST of FC932539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932539 ID=FC932539; Name=FC932539; organism=Citrus clementina; type=EST; length=699bpback to top |