FC932539

Overview
NameFC932539
Unique NameFC932539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_BUCAT (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 59/186 (31.72%), Postives = 93/186 (50.00%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF          V+   +D  R + +A + ++   +     +  +A +G+  G  I +G  A +  GN LPL ++P GT + NVE K G  G + R++G+YV ++  + E    R++  SG  +  ++  R  +G V       K L KAG A     ++    P  RG AMNPVDHPHGGG
Sbjct:   62 YRIVDFKRNKDDIGATVERFEYDPNRSSNIALILYKDGER-----KYILAPKGIKIGDTIISGLRAPIKTGNTLPLKNIPVGTFVHNVELKPGKGGQIARSAGSYVQLVAFDEEYATLRLR--SGEMRKTQSNCRATIGEVGNSEHMLKVLGKAG-ASRWIGIR----PTVRGTAMNPVDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_BUCAI (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 59/186 (31.72%), Postives = 93/186 (50.00%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF          V+   +D  R + +A + ++   +     +  +A +G+  G  I +G  A +  GN LPL ++P GT + NVE K G  G + R++G+YV ++  + E    R++  SG  +  ++  R  +G V       K L KAG A     ++    P  RG AMNPVDHPHGGG
Sbjct:   62 YRIVDFKRNKDDIGATVERFEYDPNRSSNIALILYKDGER-----KYILAPKGIKIGDTIISGLRAPIKTGNTLPLKNIPVGTFVHNVELKPGKGGQIARSAGSYVQLVAFDEEYATLRLR--SGEMRKTQSNCRATIGEVGNSEHMLKVLGKAG-ASRWIGIR----PTVRGTAMNPVDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_BUCA5 (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 59/186 (31.72%), Postives = 93/186 (50.00%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF          V+   +D  R + +A + ++   +     +  +A +G+  G  I +G  A +  GN LPL ++P GT + NVE K G  G + R++G+YV ++  + E    R++  SG  +  ++  R  +G V       K L KAG A     ++    P  RG AMNPVDHPHGGG
Sbjct:   62 YRIVDFKRNKDDIGATVERFEYDPNRSSNIALILYKDGER-----KYILAPKGIKIGDTIISGLRAPIKTGNTLPLKNIPVGTFVHNVELKPGKGGQIARSAGSYVQLVAFDEEYATLRLR--SGEMRKTQSNCRATIGEVGNSEHMLKVLGKAG-ASRWIGIR----PTVRGTAMNPVDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_ACTPJ (50S ribosomal protein L2 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 61/186 (32.80%), Postives = 90/186 (48.39%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VV+ + +D  R A +A V ++   +        +A +G+  G  I AG +A +  GN LP+ ++P GT + NVE K G  G + R++G YV +I    E     ++L SG  + +       +G V       + L KAG  +      R   P  RG AMNPVDHPHGGG
Sbjct:   62 YRLVDFKRNKLDIPAVVERLEYDPNRSANIALVLYKDGER-----RYILAPKGLSVGDTIQAGVSAPIKAGNALPMRNIPVGTTVHNVELKPGKGGQIARSAGAYVQIIAR--EGNYVTLRLRSGEMRKVLAECTATIGEVGNSEHMLRVLGKAGANRW-----RGVRPTVRGTAMNPVDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_ACTP7 (50S ribosomal protein L2 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 61/186 (32.80%), Postives = 90/186 (48.39%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VV+ + +D  R A +A V ++   +        +A +G+  G  I AG +A +  GN LP+ ++P GT + NVE K G  G + R++G YV +I    E     ++L SG  + +       +G V       + L KAG  +      R   P  RG AMNPVDHPHGGG
Sbjct:   62 YRLVDFKRNKLDIPAVVERLEYDPNRSANIALVLYKDGER-----RYILAPKGLSVGDTIQAGVSAPIKAGNALPMRNIPVGTTVHNVELKPGKGGQIARSAGAYVQIIAR--EGNYVTLRLRSGEMRKVLAECTATIGEVGNSEHMLRVLGKAGANRW-----RGVRPTVRGTAMNPVDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_ACTP2 (50S ribosomal protein L2 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 61/186 (32.80%), Postives = 90/186 (48.39%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VV+ + +D  R A +A V ++   +        +A +G+  G  I AG +A +  GN LP+ ++P GT + NVE K G  G + R++G YV +I    E     ++L SG  + +       +G V       + L KAG  +      R   P  RG AMNPVDHPHGGG
Sbjct:   62 YRLVDFKRNKLDIPAVVERLEYDPNRSANIALVLYKDGER-----RYILAPKGLSVGDTIQAGVSAPIKAGNALPMRNIPVGTTVHNVELKPGKGGQIARSAGAYVQIIAR--EGNYVTLRLRSGEMRKVLAECTATIGEVGNSEHMLRVLGKAGANRW-----RGVRPTVRGTAMNPVDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_ACIAD (50S ribosomal protein L2 OS=Acinetobacter sp. (strain ADP1) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 62/186 (33.33%), Postives = 94/186 (50.54%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VV+ I +D  R A +A +++    +        IA +G+  G  + +G +A +  GN LPL +MP G+ + NVE K G    L R++G  V ++G   +     V+L SG  + I    R ++G V+      + L KAG ++      R   P  RG+AMNPVDHPHGGG
Sbjct:   62 YRLVDFKRNKDGIPAVVERIEYDPNRTAHIALLKYADGER-----RYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGTSVQLLGR--DGSYAIVRLRSGEMRKIHVECRAVIGEVSNQENNLRSLGKAGASRW-----RGVRPTVRGMAMNPVDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RK2_SPIOL (50S ribosomal protein L2, chloroplastic OS=Spinacia oleracea GN=rpl2-A PE=1 SV=4)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 71/208 (34.13%), Postives = 95/208 (45.67%), Query Frame = 2
Query:   71 KGRGS--IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKT-RVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            KGR +  I TA  R       +R +DF        G +  I +D  R A +  + +    K        +   G   G  I +G    + +GN LPL  MP GT I N+E   G  G L R +G    +I    ++GK+  +KLPSG  ++I       VG V   G   K L +AG    ++  KR   P  RGV MNPVDHPHGGG
Sbjct:   37 KGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGKIVTIEYDPNRNAYICLIHYGDGEK-----RYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIA---KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKRLGRAG--SKRWLGKR---PVVRGVVMNPVDHPHGGG 231          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RK2_PHAVU (50S ribosomal protein L2, chloroplastic OS=Phaseolus vulgaris GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 71/208 (34.13%), Postives = 95/208 (45.67%), Query Frame = 2
Query:   71 KGRGS--IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKT-RVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            KGR +  I TA  R       +R +DF        G +  I +D  R A +  + +    K     +  +   G   G  I +G    + +GN LPL  MP GT I N+E   G  G L R +G    +I    ++GK+  +KLPSG  ++I       VG V   G   K L   GRA  K  + +   P  RGV MNPVDHPHGGG
Sbjct:   39 KGRNARGIITAGHRGGGHKRLYRQIDFRRNEKNIYGRIVTIEYDPNRNASICLIHYGDGEK-----KYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA---KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKNL---GRAGSKCWLGKR--PIVRGVVMNPVDHPHGGG 233          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RK2_PHAAN (50S ribosomal protein L2, chloroplastic OS=Phaseolus angularis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 71/208 (34.13%), Postives = 95/208 (45.67%), Query Frame = 2
Query:   71 KGRGS--IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKT-RVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            KGR +  I TA  R       +R +DF        G +  I +D  R A +  + +    K     +  +   G   G  I +G    + +GN LPL  MP GT I N+E   G  G L R +G    +I    ++GK+  +KLPSG  ++I       VG V   G   K L   GRA  K  + +   P  RGV MNPVDHPHGGG
Sbjct:   40 KGRNARGIITAGHRGGGHKRLYRQIDFRRNEKNIYGRIVTIEYDPNRNASICLIHYGDGEK-----KYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA---KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKNL---GRAGSKCWLGKR--PIVRGVVMNPVDHPHGGG 234          
The following BLAST results are available for this feature:
BLAST of FC932539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BUCAT1.091e-1831.7250S ribosomal protein L2 OS=Buchnera aphidicola su... [more]
RL2_BUCAI1.091e-1831.7250S ribosomal protein L2 OS=Buchnera aphidicola su... [more]
RL2_BUCA51.091e-1831.7250S ribosomal protein L2 OS=Buchnera aphidicola su... [more]
RL2_ACTPJ1.091e-1832.8050S ribosomal protein L2 OS=Actinobacillus pleurop... [more]
RL2_ACTP71.091e-1832.8050S ribosomal protein L2 OS=Actinobacillus pleurop... [more]
RL2_ACTP21.091e-1832.8050S ribosomal protein L2 OS=Actinobacillus pleurop... [more]
RL2_ACIAD1.091e-1833.3350S ribosomal protein L2 OS=Acinetobacter sp. (str... [more]
RK2_SPIOL1.091e-1834.1350S ribosomal protein L2, chloroplastic OS=Spinaci... [more]
RK2_PHAVU1.091e-1834.1350S ribosomal protein L2, chloroplastic OS=Phaseol... [more]
RK2_PHAAN1.091e-1834.1350S ribosomal protein L2, chloroplastic OS=Phaseol... [more]

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Properties
Property NameValue
Genbank descriptionC34209F10EF PostHarveN Citrus clementina cDNA clone C34209F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932539 ID=FC932539; Name=FC932539; organism=Citrus clementina; type=EST; length=699bp
GAACTCGTCAACGACAAGCCTATATCACTTCGAGACAGTCGCCATGGGTC
GTGTCATCCGCAACCAGAGGAAGGGTCGTGGCTCCATTTTCACGGCCAAC
ACCCGCCTGAACAAGGCCCCTGCCCAATTCCGGACCCTCGACTTCGCTGA
GGCTCACGGTTACACCCGTGGTGTCGTCAAGGAGATCATCCACGATGCCG
GCCGTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGCCACCCCTACAAGTTC
AAGATGATCACCGAGACTTTCATCGCCAACGAGGGCATGTACACCGGCCA
GTTCATCTACGCCGGTAAGAACGCTGCCCTGACCGTCGGCAACATTCTTC
CTCTCGCCTCCATGCCCGAGGGTACCGTCATCACCAACGTCGAGGAGAAG
GCTGGTGACCGTGGTGCGCTTGGCCGTACCTCCGGTAACTACGTTACTGT
TATTGGCCACAACCCCGAGGATGGCAAGACCCGTGTCAAGCTCCCCTCCG
GTGCCAAGAAGGTCATCAAGAACACCGCTCGCGGTATGGTTGGTATCGTT
GCCGGTGGTGGCCGTACCGACAAGCCTTTGCTCAAGGCTGGTCGTGCCAA
GCACAAGTTCGCCGTCAAGCGCAACTCTTGGCCCAAGACTCGTGGTGTTG
CCATGAACCCCGTCGATCACCCTCACGGTGGTGGNTACCACCAGCACAT
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