FC932539

Overview
NameFC932539
Unique NameFC932539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_CLOBL (50S ribosomal protein L2 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 64/190 (33.68%), Postives = 94/190 (49.47%), Query Frame = 2 
Query:  116 APAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            A  ++R +DF          V  I +D  R A +A V +    K        IA  G+  G  + +G  + + VGN LP+ ++P GTVI N+E  AG    L R++GN   ++    E   ++V+LPSG  + I+   R  +G+V+        + KAGR +H   V+    P  RG  MNP DHPHGGG
Sbjct:   58 AKRKYRIIDFKRNKDNIPAKVVSIEYDPNRTAFIALVVYADGEK-----RYIIAPVGLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTSEIVNIGKAGRKRH-MGVR----PTVRGSVMNPNDHPHGGG 235
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_CLOBK (50S ribosomal protein L2 OS=Clostridium botulinum (strain Okra / Type B1) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 64/190 (33.68%), Postives = 94/190 (49.47%), Query Frame = 2 
Query:  116 APAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            A  ++R +DF          V  I +D  R A +A V +    K  MI     A  G+  G  + +G  + + VGN LP+ ++P GTVI N+E   G    L R++GN   ++    E   ++V+LPSG  + I+   R  +G+V+        + KAGR +H   V+    P  RG  MNP DHPHGGG
Sbjct:   58 AKRKYRVIDFKRNKDNISAKVVSIEYDPNRTAFIALVVYADGEKRYMI-----APVGLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAPGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTNEIVNIGKAGRKRH-MGVR----PTVRGSVMNPNDHPHGGG 235
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_CLOBJ (50S ribosomal protein L2 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 64/190 (33.68%), Postives = 94/190 (49.47%), Query Frame = 2 
Query:  116 APAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            A  ++R +DF          V  I +D  R A +A V +    K        IA  G+  G  + +G  + + VGN LP+ ++P GTVI N+E  AG    L R++GN   ++    E   ++V+LPSG  + I+   R  +G+V+        + KAGR +H   V+    P  RG  MNP DHPHGGG
Sbjct:   58 AKRKYRIIDFKRNKDNIPAKVVSIEYDPNRTAFIALVVYADGEK-----RYIIAPVGLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTSEIVNIGKAGRKRH-MGVR----PTVRGSVMNPNDHPHGGG 235
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_CLOBH (50S ribosomal protein L2 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 64/190 (33.68%), Postives = 94/190 (49.47%), Query Frame = 2 
Query:  116 APAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            A  ++R +DF          V  I +D  R A +A V +    K        IA  G+  G  + +G  + + VGN LP+ ++P GTVI N+E  AG    L R++GN   ++    E   ++V+LPSG  + I+   R  +G+V+        + KAGR +H   V+    P  RG  MNP DHPHGGG
Sbjct:   58 AKRKYRIIDFKRNKDNIPAKVVSIEYDPNRTAFIALVVYADGEK-----RYIIAPVGLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTSEIVNIGKAGRKRH-MGVR----PTVRGSVMNPNDHPHGGG 235
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_CLOB1 (50S ribosomal protein L2 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 64/190 (33.68%), Postives = 94/190 (49.47%), Query Frame = 2 
Query:  116 APAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            A  ++R +DF          V  I +D  R A +A V +    K        IA  G+  G  + +G  + + VGN LP+ ++P GTVI N+E  AG    L R++GN   ++    E   ++V+LPSG  + I+   R  +G+V+        + KAGR +H   V+    P  RG  MNP DHPHGGG
Sbjct:   58 AKRKYRIIDFKRNKDNIPAKVVSIEYDPNRTAFIALVVYADGEK-----RYIIAPVGLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTSEIVNIGKAGRKRH-MGVR----PTVRGSVMNPNDHPHGGG 235
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_ACIBY (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain AYE) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 60/186 (32.26%), Postives = 94/186 (50.54%), Query Frame = 2 
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VV+ I +D  R A +A +++    +        IA +G+  G  + +G +A +  GN LPL +MP G+ + NVE K G    L R++G  V ++G   +     ++L SG  + +    R ++G V+      + L KAG A+      R   P  RG+AMNP+DHPHGGG
Sbjct:   62 YRIVDFKRNKDGVPAVVERIEYDPNRTAHIALLKYADGER-----RYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHPHGGG 235
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_ACIBT (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=rplB PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 60/186 (32.26%), Postives = 94/186 (50.54%), Query Frame = 2 
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VV+ I +D  R A +A +++    +        IA +G+  G  + +G +A +  GN LPL +MP G+ + NVE K G    L R++G  V ++G   +     ++L SG  + +    R ++G V+      + L KAG A+      R   P  RG+AMNP+DHPHGGG
Sbjct:   62 YRIVDFKRNKDGVPAVVERIEYDPNRTAHIALLKYADGER-----RYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHPHGGG 235
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_ACIBS (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain SDF) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 60/186 (32.26%), Postives = 94/186 (50.54%), Query Frame = 2 
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VV+ I +D  R A +A +++    +        IA +G+  G  + +G +A +  GN LPL +MP G+ + NVE K G    L R++G  V ++G   +     ++L SG  + +    R ++G V+      + L KAG A+      R   P  RG+AMNP+DHPHGGG
Sbjct:   62 YRIVDFKRNKDGVPAVVERIEYDPNRTAHIALLKYADGER-----RYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHPHGGG 235
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_ACIB5 (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain AB0057) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 60/186 (32.26%), Postives = 94/186 (50.54%), Query Frame = 2 
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VV+ I +D  R A +A +++    +        IA +G+  G  + +G +A +  GN LPL +MP G+ + NVE K G    L R++G  V ++G   +     ++L SG  + +    R ++G V+      + L KAG A+      R   P  RG+AMNP+DHPHGGG
Sbjct:   62 YRIVDFKRNKDGVPAVVERIEYDPNRTAHIALLKYADGER-----RYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHPHGGG 235
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_ACIB3 (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain AB307-0294) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 60/186 (32.26%), Postives = 94/186 (50.54%), Query Frame = 2 
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VV+ I +D  R A +A +++    +        IA +G+  G  + +G +A +  GN LPL +MP G+ + NVE K G    L R++G  V ++G   +     ++L SG  + +    R ++G V+      + L KAG A+      R   P  RG+AMNP+DHPHGGG
Sbjct:   62 YRIVDFKRNKDGVPAVVERIEYDPNRTAHIALLKYADGER-----RYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHPHGGG 235
The following BLAST results are available for this feature:
BLAST of FC932539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_CLOBL1.425e-1833.6850S ribosomal protein L2 OS=Clostridium botulinum ... [more]
RL2_CLOBK1.425e-1833.6850S ribosomal protein L2 OS=Clostridium botulinum ... [more]
RL2_CLOBJ1.425e-1833.6850S ribosomal protein L2 OS=Clostridium botulinum ... [more]
RL2_CLOBH1.425e-1833.6850S ribosomal protein L2 OS=Clostridium botulinum ... [more]
RL2_CLOB11.425e-1833.6850S ribosomal protein L2 OS=Clostridium botulinum ... [more]
RL2_ACIBY1.425e-1832.2650S ribosomal protein L2 OS=Acinetobacter baumanni... [more]
RL2_ACIBT1.425e-1832.2650S ribosomal protein L2 OS=Acinetobacter baumanni... [more]
RL2_ACIBS1.425e-1832.2650S ribosomal protein L2 OS=Acinetobacter baumanni... [more]
RL2_ACIB51.425e-1832.2650S ribosomal protein L2 OS=Acinetobacter baumanni... [more]
RL2_ACIB31.425e-1832.2650S ribosomal protein L2 OS=Acinetobacter baumanni... [more]

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Properties
Property NameValue
Genbank descriptionC34209F10EF PostHarveN Citrus clementina cDNA clone C34209F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932539 ID=FC932539; Name=FC932539; organism=Citrus clementina; type=EST; length=699bp
GAACTCGTCAACGACAAGCCTATATCACTTCGAGACAGTCGCCATGGGTC
GTGTCATCCGCAACCAGAGGAAGGGTCGTGGCTCCATTTTCACGGCCAAC
ACCCGCCTGAACAAGGCCCCTGCCCAATTCCGGACCCTCGACTTCGCTGA
GGCTCACGGTTACACCCGTGGTGTCGTCAAGGAGATCATCCACGATGCCG
GCCGTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGCCACCCCTACAAGTTC
AAGATGATCACCGAGACTTTCATCGCCAACGAGGGCATGTACACCGGCCA
GTTCATCTACGCCGGTAAGAACGCTGCCCTGACCGTCGGCAACATTCTTC
CTCTCGCCTCCATGCCCGAGGGTACCGTCATCACCAACGTCGAGGAGAAG
GCTGGTGACCGTGGTGCGCTTGGCCGTACCTCCGGTAACTACGTTACTGT
TATTGGCCACAACCCCGAGGATGGCAAGACCCGTGTCAAGCTCCCCTCCG
GTGCCAAGAAGGTCATCAAGAACACCGCTCGCGGTATGGTTGGTATCGTT
GCCGGTGGTGGCCGTACCGACAAGCCTTTGCTCAAGGCTGGTCGTGCCAA
GCACAAGTTCGCCGTCAAGCGCAACTCTTGGCCCAAGACTCGTGGTGTTG
CCATGAACCCCGTCGATCACCCTCACGGTGGTGGNTACCACCAGCACAT
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