FC932539

Overview
NameFC932539
Unique NameFC932539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METST (50S ribosomal protein L2P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.495e-39
Identity = 88/219 (40.18%), Postives = 126/219 (57.53%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+ +  QR+GRG+  + +++   +    +R+ D  E  G   G+V +IIHD GR AP+A V+F +  +     +  +A E +     I  G +A++  GN LPL+ +PEGT + N+E   GD G   R+SG Y ++I H+ +  KT +++PSG  K     +R  VG+VAGGGR +KP LKAG   H    K       RGVAMN VDHPHGGG  QH
Sbjct:    1 MGKRLIIQRRGRGTPTYRSSSHRFRGKVAYRSYDKLEREGSLTGIVIDIIHDPGRSAPVAVVKFDNGEE-----KLVLAPESIAIDDEIECGVSASIEPGNTLPLSEIPEGTPVFNIENNPGDGGKFVRSSGTYASLITHDVD--KTMIEMPSGELKAFNPRSRATVGVVAGGGRKEKPFLKAGNRYHALKAKGKKMMTVRGVAMNAVDHPHGGGNRQH 212          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METKA (50S ribosomal protein L2P OS=Methanopyrus kandleri GN=rpl2p PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.240e-38
Identity = 88/218 (40.37%), Postives = 119/218 (54.59%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694
            MG+ IR QR GRG   + A +   +   + R  D  E  G   G V E++HD  R AP+A+V+F    +        +  EG   G  I  G +A +  GN LPLA +PEG  I N+E + GD G   R  G Y T+I H+   G+T V+LPSG  +      R  +G+++GGG+ +KP +KAG+  +    K   WPK RGVAMN VDHP GGG HQ
Sbjct:    1 MGKRIRPQRLGRGGPTYRAPSHRYRGRIEHRPYDEQEKKGKVVGKVVELLHDPARNAPVARVRFEDGEE-----RLILVPEGTKVGDIIECGVSAEIKPGNTLPLAEIPEGVPIFNIEGQPGDGGKFARAPGCYATIIAHDV--GRTYVQLPSGKVRTFDPRCRATIGVMSGGGKREKPFVKAGKKYYHMRSKGGKWPKVRGVAMNAVDHPFGGGNHQ 211          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_META3 (50S ribosomal protein L2P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.240e-38
Identity = 86/219 (39.27%), Postives = 125/219 (57.08%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+ +++Q +G+G+  +T+ T   K   ++R  D +E      G + +I+HD GR +P+A+V++ +  +        +  EGM     I  G +A +  GN+LPL  +PEG  + N+E   GD G L R+ G Y  VI H+    KT +KLPSG  K +    R  +G+VAGGGR +KP+ KAG+  H    K   WP+ RGVAMN VDHP GGG  QH
Sbjct:    1 MGKRLQSQNRGKGTPRYTSPTHKRKGAVKYRKFDESERKDKIIGTIIDILHDPGRSSPIARVRYDNGEE-----RLILIPEGMKIKDTIECGISAEIKPGNVLPLGEVPEGIPVYNIETIPGDGGKLVRSGGCYAHVITHDVS--KTIIKLPSGHMKTLNPMCRATIGVVAGGGRKEKPITKAGKKYHAMKAKAVLWPRVRGVAMNAVDHPFGGGNTQH 212          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_SULSO (50S ribosomal protein L2P OS=Sulfolobus solfataricus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.115e-38
Identity = 89/217 (41.01%), Postives = 123/217 (56.68%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694
            MG+ +  QR G+GS     T  N    +   + +    G+  G V +I+H+ G  AP+A V+  +  KF M      A +G+   Q I  GK + +  GN++ +   PEGT++ NVEE  GD G   R++G+Y  V+G + +  +  ++LPS   K + N AR  VGIVAGGG  +KPLLKAG    K+ VK   WP  RGVAMN VDHPHGGG HQ
Sbjct:    1 MGKNLLQQRAGKGS----PTFRNPGWLRIGKVRYPNIFGHFIGKVIDIVHNPGMNAPVALVKLENGTKFLMQ-----AIQGLVVNQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKSGD--RVLIRLPSDKIKAVSNKARATVGIVAGGGVIEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQ 206          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_HALMA (50S ribosomal protein L2P OS=Haloarcula marismortui GN=rpl2p PE=1 SV=4)

HSP 1 Score: 159.073 bits (401), Expect = 2.115e-38
Identity = 92/219 (42.01%), Postives = 118/219 (53.88%), Query Frame = 2
Query:   44 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGR I+ QR+GRG S F A +   KA  + R ++  +      G V +I HD  R AP+A V+F    +        +A EG+  G  +  G +A +  GN LPLA +PEG  + NVE   GD G   R SG    ++ H  +     VKLPSG  K +    R  +G+VAGGGRTDKP +KAG   HK   +   WP  RGVAMN VDHP GGG  QH
Sbjct:    1 MGRRIQGQRRGRGTSTFRAPSHRYKADLEHRKVEDGDV---IAGTVVDIEHDPARSAPVAAVEFEDGDR-----RLILAPEGVGVGDELQVGVSAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTH--DRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQH 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_SULTO (50S ribosomal protein L2P OS=Sulfolobus tokodaii GN=rpl2p PE=3 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.608e-38
Identity = 91/218 (41.74%), Postives = 127/218 (58.26%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694
            MG+ +  QR GRG I F + +      A+   ++     G   G V +I+H+ G  APLA ++     KF + +      +G+  GQ I  GKNAA++ GNI+ + ++PEGT+I+N+E+  GD G   R++G Y  V+G   +  K  VKL S     + + AR +VG+VAGGG T+KPLLKAG    K+ VK   WP  RGVAMN V HPHGGG HQ
Sbjct:    1 MGKKLLQQRAGRGGINFRSPSWRRVGKAKIPNIE-----GEHIGKVIDIVHNPGTNAPLALIKLDDGTKFYVPSV-----QGLVVGQKIQIGKNAAISNGNIVEVGNVPEGTIISNIEKTRGDGGKFARSAGTYGVVVGKTGD--KVLVKLSSEKIAQVSSNARAIVGVVAGGGVTEKPLLKAGNNYWKYKVKAKKWPHVRGVAMNAVSHPHGGGLHQ 206          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_SULIY (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.608e-38
Identity = 89/219 (40.64%), Postives = 127/219 (57.99%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRT--LDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694
            MG+ +  QR G+GS         ++P+  R   + +    G+  G V +I+H+ G  AP+A ++  +  KF  +T+   A +G+   Q I  GK + +  GN++ +   PEGT++ NVEE  GD G   R++G+Y  V+G + +  K  +KLPS   K + N AR  VG+VAGGG  +KPLLKAG    K+ VK   WP  RGVAMN VDHPHGGG HQ
Sbjct:    1 MGKNLLQQRAGKGS------PTFRSPSWLRIGKVRYPNIFGHLVGKVIDIVHNPGMNAPVAIIKLENGTKF--LTQ---AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKSGD--KVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQ 206          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_SULIM (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.608e-38
Identity = 89/219 (40.64%), Postives = 127/219 (57.99%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRT--LDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694
            MG+ +  QR G+GS         ++P+  R   + +    G+  G V +I+H+ G  AP+A ++  +  KF  +T+   A +G+   Q I  GK + +  GN++ +   PEGT++ NVEE  GD G   R++G+Y  V+G + +  K  +KLPS   K + N AR  VG+VAGGG  +KPLLKAG    K+ VK   WP  RGVAMN VDHPHGGG HQ
Sbjct:    1 MGKNLLQQRAGKGS------PTFRSPSWLRIGKVRYPNIFGHLVGKVIDIVHNPGMNAPVAIIKLENGTKF--LTQ---AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKSGD--KVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQ 206          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_SULIL (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.608e-38
Identity = 89/219 (40.64%), Postives = 127/219 (57.99%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRT--LDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694
            MG+ +  QR G+GS         ++P+  R   + +    G+  G V +I+H+ G  AP+A ++  +  KF  +T+   A +G+   Q I  GK + +  GN++ +   PEGT++ NVEE  GD G   R++G+Y  V+G + +  K  +KLPS   K + N AR  VG+VAGGG  +KPLLKAG    K+ VK   WP  RGVAMN VDHPHGGG HQ
Sbjct:    1 MGKNLLQQRAGKGS------PTFRSPSWLRIGKVRYPNIFGHLVGKVIDIVHNPGMNAPVAIIKLENGTKF--LTQ---AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKSGD--KVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQ 206          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_SULIK (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.608e-38
Identity = 89/219 (40.64%), Postives = 127/219 (57.99%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRT--LDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694
            MG+ +  QR G+GS         ++P+  R   + +    G+  G V +I+H+ G  AP+A ++  +  KF  +T+   A +G+   Q I  GK + +  GN++ +   PEGT++ NVEE  GD G   R++G+Y  V+G + +  K  +KLPS   K + N AR  VG+VAGGG  +KPLLKAG    K+ VK   WP  RGVAMN VDHPHGGG HQ
Sbjct:    1 MGKNLLQQRAGKGS------PTFRSPSWLRIGKVRYPNIFGHLVGKVIDIVHNPGMNAPVAIIKLENGTKF--LTQ---AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKSGD--KVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQ 206          
The following BLAST results are available for this feature:
BLAST of FC932539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_METST9.495e-3940.1850S ribosomal protein L2P OS=Methanosphaera stadtm... [more]
RL2_METKA1.240e-3840.3750S ribosomal protein L2P OS=Methanopyrus kandleri... [more]
RL2_META31.240e-3839.2750S ribosomal protein L2P OS=Methanococcus aeolicu... [more]
RL2_SULSO2.115e-3841.0150S ribosomal protein L2P OS=Sulfolobus solfataric... [more]
RL2_HALMA2.115e-3842.0150S ribosomal protein L2P OS=Haloarcula marismortu... [more]
RL2_SULTO3.608e-3841.7450S ribosomal protein L2P OS=Sulfolobus tokodaii G... [more]
RL2_SULIY3.608e-3840.6450S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIM3.608e-3840.6450S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIL3.608e-3840.6450S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIK3.608e-3840.6450S ribosomal protein L2P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionC34209F10EF PostHarveN Citrus clementina cDNA clone C34209F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932539 ID=FC932539; Name=FC932539; organism=Citrus clementina; type=EST; length=699bp
GAACTCGTCAACGACAAGCCTATATCACTTCGAGACAGTCGCCATGGGTC
GTGTCATCCGCAACCAGAGGAAGGGTCGTGGCTCCATTTTCACGGCCAAC
ACCCGCCTGAACAAGGCCCCTGCCCAATTCCGGACCCTCGACTTCGCTGA
GGCTCACGGTTACACCCGTGGTGTCGTCAAGGAGATCATCCACGATGCCG
GCCGTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGCCACCCCTACAAGTTC
AAGATGATCACCGAGACTTTCATCGCCAACGAGGGCATGTACACCGGCCA
GTTCATCTACGCCGGTAAGAACGCTGCCCTGACCGTCGGCAACATTCTTC
CTCTCGCCTCCATGCCCGAGGGTACCGTCATCACCAACGTCGAGGAGAAG
GCTGGTGACCGTGGTGCGCTTGGCCGTACCTCCGGTAACTACGTTACTGT
TATTGGCCACAACCCCGAGGATGGCAAGACCCGTGTCAAGCTCCCCTCCG
GTGCCAAGAAGGTCATCAAGAACACCGCTCGCGGTATGGTTGGTATCGTT
GCCGGTGGTGGCCGTACCGACAAGCCTTTGCTCAAGGCTGGTCGTGCCAA
GCACAAGTTCGCCGTCAAGCGCAACTCTTGGCCCAAGACTCGTGGTGTTG
CCATGAACCCCGTCGATCACCCTCACGGTGGTGGNTACCACCAGCACAT
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