FC932539
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_SULIA (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl2p PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 3.608e-38 Identity = 89/219 (40.64%), Postives = 127/219 (57.99%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRT--LDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694 MG+ + QR G+GS ++P+ R + + G+ G V +I+H+ G AP+A ++ + KF +T+ A +G+ Q I GK + + GN++ + PEGT++ NVEE GD G R++G+Y V+G + + K +KLPS K + N AR VG+VAGGG +KPLLKAG K+ VK WP RGVAMN VDHPHGGG HQ Sbjct: 1 MGKNLLQQRAGKGS------PTFRSPSWLRIGKVRYPNIFGHLVGKVIDIVHNPGMNAPVAIIKLENGTKF--LTQ---AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKSGD--KVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQ 206
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_NATPD (50S ribosomal protein L2P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl2p PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 6.154e-38 Identity = 92/219 (42.01%), Postives = 120/219 (54.79%), Query Frame = 2 Query: 44 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MGR I QR+GRG S F A + KA R ++ ++ G V +I HD R APLA VQF + +A EG+ G I G +A + GN +PLA +PEG + NVE + GD G R SG T++ H + V+LPSG + + R +G+VAGGGRT+KP +KAG HK + WP+ RGVAMN VDHP GGG QH Sbjct: 1 MGRRILGQRRGRGTSTFRAPSHRYKADLSHRNVEESDL---VTGEVVDIEHDPARSAPLADVQFDDGDR-----RLVLAPEGVTVGDEIQIGVSAEIAPGNTMPLAEIPEGVPVCNVERQPGDGGKFARASGVSATLLTH--DRNAAVVQLPSGEMRRLSPECRATIGVVAGGGRTEKPFVKAGNKHHKMKSRGGKWPRVRGVAMNAVDHPFGGGGRQH 209
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METS3 (50S ribosomal protein L2P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl2p PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 6.154e-38 Identity = 88/219 (40.18%), Postives = 125/219 (57.08%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MG+ + QR+GRG+ + K ++R+ D E G +G+V +I+HD R AP+A+V+F + K + +A E + I G +A + GN LPLA +PEGT I ++E GD G R+SG Y ++I H+ ++ V+LPSG K + R +G+VAGGGR +KP LKAG H + K + RGVAMN VDHPHGGG QH Sbjct: 1 MGKRLIIQRRGRGTPAHRVASHRFKDKIRYRSYDALEKEGSIKGIVTDIVHDPARTAPIAEVKFENGEK-----KFILAPESIQIDDEIECGISAPIKFGNTLPLAEIPEGTPIYDIENTPGDGGRFVRSSGTYASLITHDAN--QSVVELPSGELKYLNPRCRASIGVVAGGGRKEKPFLKAGNRWHAYKAKGKKFMTVRGVAMNAVDHPHGGGNRQH 212
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_THEPD (50S ribosomal protein L2P OS=Thermofilum pendens (strain Hrk 5) GN=rpl2p PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 8.038e-38 Identity = 89/218 (40.83%), Postives = 129/218 (59.17%), Query Frame = 2 Query: 44 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTR-GVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYH 691 MG+ + QR+GRG S+F PA++ + E GVVK+++H+ GRGAPLA V+F K MI EG+ GQ IY G A +G+I+ + ++PEGT+++N+E + GD G L R+SG Y V+ H+ +GKT ++LPS K + + AR +G+VA GGR +KP+LKAG+ H K +P RG AM+ HP GGG+H Sbjct: 1 MGKRLLVQRRGRGGSVFRNPGWKRLGPARYPPYNPEEFKNKVLVGVVKDLLHEPGRGAPLALVEFEDGTKMYMIPP-----EGLAVGQKIYYGAKAPAVLGSIVEIGNVPEGTIVSNIEIRPGDGGKLARSSGAYALVLAHS--NGKTLIQLPSKKVKEVSSEARATIGMVAAGGRIEKPMLKAGKMWHWSRAKSFKYPTVRGKAMSAYAHPAGGGHH 211
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_SULIN (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl2p PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.050e-37 Identity = 88/219 (40.18%), Postives = 126/219 (57.53%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRT--LDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694 MG+ + QR G+GS ++P+ R + + G+ G V +I+H+ G P+A ++ + KF +T+ A +G+ Q I GK + + GN++ + PEGT++ NVEE GD G R++G+Y V+G + + K +KLPS K + N AR VG+VAGGG +KPLLKAG K+ VK WP RGVAMN VDHPHGGG HQ Sbjct: 1 MGKNLLQQRAGKGS------PTFRSPSWLRIGKVRYPNIFGHLVGKVIDIVHNPGMNTPVAIIKLENGTKF--LTQ---AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKSGD--KVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQ 206
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_UNCMA (50S ribosomal protein L2P OS=Uncultured methanogenic archaeon RC-I GN=rpl2p PE=3 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 3.054e-37 Identity = 87/221 (39.37%), Postives = 125/221 (56.56%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHG--YTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MG+ + +Q +G+GS + A + KA L+ + G G++ E++HD R P+ +V+F + + +A EG+ G I G +A + GN LPL+ +PEG I N+E + GD GA R+SG Y ++ H E KT V++PSG K + R +G+VAGGGRT+KP ++AG +K A K WP RGVAMN VDHP GGG QH Sbjct: 1 MGKRLMSQNRGKGSPTYRATSSRFKAD-----LEHIKTFGDETIEGIITEVVHDPARNCPIIRVKFGNGEE-----RLILAPEGVGVGDKIACGISAEIKPGNTLPLSEIPEGCAICNIESQPGDGGAFARSSGVYAIIVAH--EGKKTVVQMPSGEIKRLNPKCRATIGVVAGGGRTEKPFVRAGNKWYKMANKATKWPVVRGVAMNAVDHPFGGGGRQH 209
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_HALSA (50S ribosomal protein L2P OS=Halobacterium salinarium GN=rpl2p PE=3 SV=3) HSP 1 Score: 155.221 bits (391), Expect = 3.054e-37 Identity = 90/219 (41.10%), Postives = 118/219 (53.88%), Query Frame = 2 Query: 44 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MGR I+ QR+GRG S F A + KA + + + G V ++ HD R AP+A+V F + +A+EG+ G I G +A + GN LPLA +PEG + NVE GD G R G ++ H E T V+LPSG K + R +G+VAGGGRT+KP +KAG HK + WP+ RGVAMN VDHP GGG QH Sbjct: 1 MGRRIQGQRRGRGTSTFRAPSHRYKAELSHKRTEDTDV---LAGEVIDVEHDPARSAPVARVAFEDDDQ-----RLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTH--ERDATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQH 209
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_HALS3 (50S ribosomal protein L2P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 3.054e-37 Identity = 90/219 (41.10%), Postives = 118/219 (53.88%), Query Frame = 2 Query: 44 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MGR I+ QR+GRG S F A + KA + + + G V ++ HD R AP+A+V F + +A+EG+ G I G +A + GN LPLA +PEG + NVE GD G R G ++ H E T V+LPSG K + R +G+VAGGGRT+KP +KAG HK + WP+ RGVAMN VDHP GGG QH Sbjct: 1 MGRRIQGQRRGRGTSTFRAPSHRYKAELSHKRTEDTDV---LAGEVIDVEHDPARSAPVARVAFEDDDQ-----RLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTH--ERDATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQH 209
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_ENCCU (60S ribosomal protein L8 OS=Encephalitozoon cuniculi GN=RPL8 PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 3.989e-37 Identity = 83/219 (37.90%), Postives = 123/219 (56.16%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFI-ANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MG++ R R+ + + + P L + G V +I+H+ RGAP+A + F+ + + A+EGMYTGQ I G +A + +GNI + ++PEG + +VE GD G +G+Y V+ H E +T +K+PSG K + + R +VG+VAGGG DKPLLKA A +K + + +P+ RGVAMNPV+H HGGG HQH Sbjct: 1 MGKITRRTREAK--------KKQRQPIVKVCLSYPIIPQVEEGEVIDIVHERSRGAPVAIISFKED-------DCMVPASEGMYTGQKILIGDDAPIDIGNITKIKNVPEGMAVNSVESVYGDGGTFAMVNGSYSLVVNHRKETNETVIKIPSGKKLTVSSECRCIVGVVAGGGIHDKPLLKASVAHYKAKARGHVFPRVRGVAMNPVEHIHGGGNHQH 204
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_ARCFU (50S ribosomal protein L2P OS=Archaeoglobus fulgidus GN=rpl2p PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 3.989e-37 Identity = 93/220 (42.27%), Postives = 125/220 (56.82%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFI-ANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MG+ I +Q +G+G+ + A + K A+ L F + V +I HD+ R P+A V K +ET+I A EG+ TG +YAG N + GNI L ++PEGT + N+E + GD G R SG + V+ E K V++PSG +K R M+G+VAGGGRTDKP +KAG+ HK K WP+ RGVAMN VDHP GGG HQH Sbjct: 1 MGKRIISQNRGKGTPTYRAPSHRYKTDAKL--LRFKDE--VVAAKVIDIQHDSARNGPVALV------KLPDGSETYILAVEGLGTGDVVYAGDNVEIASGNITYLKNIPEGTPVCNIEAQPGDGGKFIRASGTFGFVVSR--EADKVLVQMPSGKQKWFHPNCRAMIGVVAGGGRTDKPFVKAGKKYHKMKSKAAKWPRVRGVAMNAVDHPFGGGKHQH 208 The following BLAST results are available for this feature:
BLAST of FC932539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932539 ID=FC932539; Name=FC932539; organism=Citrus clementina; type=EST; length=699bpback to top |