FC932539

Overview
NameFC932539
Unique NameFC932539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_SULIA (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.608e-38
Identity = 89/219 (40.64%), Postives = 127/219 (57.99%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRT--LDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694
            MG+ +  QR G+GS         ++P+  R   + +    G+  G V +I+H+ G  AP+A ++  +  KF  +T+   A +G+   Q I  GK + +  GN++ +   PEGT++ NVEE  GD G   R++G+Y  V+G + +  K  +KLPS   K + N AR  VG+VAGGG  +KPLLKAG    K+ VK   WP  RGVAMN VDHPHGGG HQ
Sbjct:    1 MGKNLLQQRAGKGS------PTFRSPSWLRIGKVRYPNIFGHLVGKVIDIVHNPGMNAPVAIIKLENGTKF--LTQ---AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKSGD--KVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQ 206          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_NATPD (50S ribosomal protein L2P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.154e-38
Identity = 92/219 (42.01%), Postives = 120/219 (54.79%), Query Frame = 2
Query:   44 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGR I  QR+GRG S F A +   KA    R ++ ++      G V +I HD  R APLA VQF    +        +A EG+  G  I  G +A +  GN +PLA +PEG  + NVE + GD G   R SG   T++ H  +     V+LPSG  + +    R  +G+VAGGGRT+KP +KAG   HK   +   WP+ RGVAMN VDHP GGG  QH
Sbjct:    1 MGRRILGQRRGRGTSTFRAPSHRYKADLSHRNVEESDL---VTGEVVDIEHDPARSAPLADVQFDDGDR-----RLVLAPEGVTVGDEIQIGVSAEIAPGNTMPLAEIPEGVPVCNVERQPGDGGKFARASGVSATLLTH--DRNAAVVQLPSGEMRRLSPECRATIGVVAGGGRTEKPFVKAGNKHHKMKSRGGKWPRVRGVAMNAVDHPFGGGGRQH 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METS3 (50S ribosomal protein L2P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.154e-38
Identity = 88/219 (40.18%), Postives = 125/219 (57.08%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+ +  QR+GRG+      +   K   ++R+ D  E  G  +G+V +I+HD  R AP+A+V+F +  K     +  +A E +     I  G +A +  GN LPLA +PEGT I ++E   GD G   R+SG Y ++I H+    ++ V+LPSG  K +    R  +G+VAGGGR +KP LKAG   H +  K   +   RGVAMN VDHPHGGG  QH
Sbjct:    1 MGKRLIIQRRGRGTPAHRVASHRFKDKIRYRSYDALEKEGSIKGIVTDIVHDPARTAPIAEVKFENGEK-----KFILAPESIQIDDEIECGISAPIKFGNTLPLAEIPEGTPIYDIENTPGDGGRFVRSSGTYASLITHDAN--QSVVELPSGELKYLNPRCRASIGVVAGGGRKEKPFLKAGNRWHAYKAKGKKFMTVRGVAMNAVDHPHGGGNRQH 212          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_THEPD (50S ribosomal protein L2P OS=Thermofilum pendens (strain Hrk 5) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.038e-38
Identity = 89/218 (40.83%), Postives = 129/218 (59.17%), Query Frame = 2
Query:   44 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTR-GVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYH 691
            MG+ +  QR+GRG S+F         PA++   +  E       GVVK+++H+ GRGAPLA V+F    K  MI       EG+  GQ IY G  A   +G+I+ + ++PEGT+++N+E + GD G L R+SG Y  V+ H+  +GKT ++LPS   K + + AR  +G+VA GGR +KP+LKAG+  H    K   +P  RG AM+   HP GGG+H
Sbjct:    1 MGKRLLVQRRGRGGSVFRNPGWKRLGPARYPPYNPEEFKNKVLVGVVKDLLHEPGRGAPLALVEFEDGTKMYMIPP-----EGLAVGQKIYYGAKAPAVLGSIVEIGNVPEGTIVSNIEIRPGDGGKLARSSGAYALVLAHS--NGKTLIQLPSKKVKEVSSEARATIGMVAAGGRIEKPMLKAGKMWHWSRAKSFKYPTVRGKAMSAYAHPAGGGHH 211          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_SULIN (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.050e-37
Identity = 88/219 (40.18%), Postives = 126/219 (57.53%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRT--LDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694
            MG+ +  QR G+GS         ++P+  R   + +    G+  G V +I+H+ G   P+A ++  +  KF  +T+   A +G+   Q I  GK + +  GN++ +   PEGT++ NVEE  GD G   R++G+Y  V+G + +  K  +KLPS   K + N AR  VG+VAGGG  +KPLLKAG    K+ VK   WP  RGVAMN VDHPHGGG HQ
Sbjct:    1 MGKNLLQQRAGKGS------PTFRSPSWLRIGKVRYPNIFGHLVGKVIDIVHNPGMNTPVAIIKLENGTKF--LTQ---AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKSGD--KVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQ 206          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_UNCMA (50S ribosomal protein L2P OS=Uncultured methanogenic archaeon RC-I GN=rpl2p PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.054e-37
Identity = 87/221 (39.37%), Postives = 125/221 (56.56%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHG--YTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+ + +Q +G+GS  + A +   KA      L+  +  G     G++ E++HD  R  P+ +V+F +  +        +A EG+  G  I  G +A +  GN LPL+ +PEG  I N+E + GD GA  R+SG Y  ++ H  E  KT V++PSG  K +    R  +G+VAGGGRT+KP ++AG   +K A K   WP  RGVAMN VDHP GGG  QH
Sbjct:    1 MGKRLMSQNRGKGSPTYRATSSRFKAD-----LEHIKTFGDETIEGIITEVVHDPARNCPIIRVKFGNGEE-----RLILAPEGVGVGDKIACGISAEIKPGNTLPLSEIPEGCAICNIESQPGDGGAFARSSGVYAIIVAH--EGKKTVVQMPSGEIKRLNPKCRATIGVVAGGGRTEKPFVRAGNKWYKMANKATKWPVVRGVAMNAVDHPFGGGGRQH 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_HALSA (50S ribosomal protein L2P OS=Halobacterium salinarium GN=rpl2p PE=3 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 3.054e-37
Identity = 90/219 (41.10%), Postives = 118/219 (53.88%), Query Frame = 2
Query:   44 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGR I+ QR+GRG S F A +   KA    +  +  +      G V ++ HD  R AP+A+V F    +        +A+EG+  G  I  G +A +  GN LPLA +PEG  + NVE   GD G   R  G    ++ H  E   T V+LPSG  K +    R  +G+VAGGGRT+KP +KAG   HK   +   WP+ RGVAMN VDHP GGG  QH
Sbjct:    1 MGRRIQGQRRGRGTSTFRAPSHRYKAELSHKRTEDTDV---LAGEVIDVEHDPARSAPVARVAFEDDDQ-----RLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTH--ERDATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQH 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_HALS3 (50S ribosomal protein L2P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.054e-37
Identity = 90/219 (41.10%), Postives = 118/219 (53.88%), Query Frame = 2
Query:   44 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGR I+ QR+GRG S F A +   KA    +  +  +      G V ++ HD  R AP+A+V F    +        +A+EG+  G  I  G +A +  GN LPLA +PEG  + NVE   GD G   R  G    ++ H  E   T V+LPSG  K +    R  +G+VAGGGRT+KP +KAG   HK   +   WP+ RGVAMN VDHP GGG  QH
Sbjct:    1 MGRRIQGQRRGRGTSTFRAPSHRYKAELSHKRTEDTDV---LAGEVIDVEHDPARSAPVARVAFEDDDQ-----RLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTH--ERDATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQH 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_ENCCU (60S ribosomal protein L8 OS=Encephalitozoon cuniculi GN=RPL8 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.989e-37
Identity = 83/219 (37.90%), Postives = 123/219 (56.16%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFI-ANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG++ R  R+ +        +  + P     L +        G V +I+H+  RGAP+A + F+         +  + A+EGMYTGQ I  G +A + +GNI  + ++PEG  + +VE   GD G     +G+Y  V+ H  E  +T +K+PSG K  + +  R +VG+VAGGG  DKPLLKA  A +K   + + +P+ RGVAMNPV+H HGGG HQH
Sbjct:    1 MGKITRRTREAK--------KKQRQPIVKVCLSYPIIPQVEEGEVIDIVHERSRGAPVAIISFKED-------DCMVPASEGMYTGQKILIGDDAPIDIGNITKIKNVPEGMAVNSVESVYGDGGTFAMVNGSYSLVVNHRKETNETVIKIPSGKKLTVSSECRCIVGVVAGGGIHDKPLLKASVAHYKAKARGHVFPRVRGVAMNPVEHIHGGGNHQH 204          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_ARCFU (50S ribosomal protein L2P OS=Archaeoglobus fulgidus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.989e-37
Identity = 93/220 (42.27%), Postives = 125/220 (56.82%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFI-ANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+ I +Q +G+G+  + A +   K  A+   L F +        V +I HD+ R  P+A V      K    +ET+I A EG+ TG  +YAG N  +  GNI  L ++PEGT + N+E + GD G   R SG +  V+    E  K  V++PSG +K      R M+G+VAGGGRTDKP +KAG+  HK   K   WP+ RGVAMN VDHP GGG HQH
Sbjct:    1 MGKRIISQNRGKGTPTYRAPSHRYKTDAKL--LRFKDE--VVAAKVIDIQHDSARNGPVALV------KLPDGSETYILAVEGLGTGDVVYAGDNVEIASGNITYLKNIPEGTPVCNIEAQPGDGGKFIRASGTFGFVVSR--EADKVLVQMPSGKQKWFHPNCRAMIGVVAGGGRTDKPFVKAGKKYHKMKSKAAKWPRVRGVAMNAVDHPFGGGKHQH 208          
The following BLAST results are available for this feature:
BLAST of FC932539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_SULIA3.608e-3840.6450S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_NATPD6.154e-3842.0150S ribosomal protein L2P OS=Natronomonas pharaoni... [more]
RL2_METS36.154e-3840.1850S ribosomal protein L2P OS=Methanobrevibacter sm... [more]
RL2_THEPD8.038e-3840.8350S ribosomal protein L2P OS=Thermofilum pendens (... [more]
RL2_SULIN1.050e-3740.1850S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_UNCMA3.054e-3739.3750S ribosomal protein L2P OS=Uncultured methanogen... [more]
RL2_HALSA3.054e-3741.1050S ribosomal protein L2P OS=Halobacterium salinar... [more]
RL2_HALS33.054e-3741.1050S ribosomal protein L2P OS=Halobacterium salinar... [more]
RL8_ENCCU3.989e-3737.9060S ribosomal protein L8 OS=Encephalitozoon cunicu... [more]
RL2_ARCFU3.989e-3742.2750S ribosomal protein L2P OS=Archaeoglobus fulgidu... [more]

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Properties
Property NameValue
Genbank descriptionC34209F10EF PostHarveN Citrus clementina cDNA clone C34209F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932539 ID=FC932539; Name=FC932539; organism=Citrus clementina; type=EST; length=699bp
GAACTCGTCAACGACAAGCCTATATCACTTCGAGACAGTCGCCATGGGTC
GTGTCATCCGCAACCAGAGGAAGGGTCGTGGCTCCATTTTCACGGCCAAC
ACCCGCCTGAACAAGGCCCCTGCCCAATTCCGGACCCTCGACTTCGCTGA
GGCTCACGGTTACACCCGTGGTGTCGTCAAGGAGATCATCCACGATGCCG
GCCGTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGCCACCCCTACAAGTTC
AAGATGATCACCGAGACTTTCATCGCCAACGAGGGCATGTACACCGGCCA
GTTCATCTACGCCGGTAAGAACGCTGCCCTGACCGTCGGCAACATTCTTC
CTCTCGCCTCCATGCCCGAGGGTACCGTCATCACCAACGTCGAGGAGAAG
GCTGGTGACCGTGGTGCGCTTGGCCGTACCTCCGGTAACTACGTTACTGT
TATTGGCCACAACCCCGAGGATGGCAAGACCCGTGTCAAGCTCCCCTCCG
GTGCCAAGAAGGTCATCAAGAACACCGCTCGCGGTATGGTTGGTATCGTT
GCCGGTGGTGGCCGTACCGACAAGCCTTTGCTCAAGGCTGGTCGTGCCAA
GCACAAGTTCGCCGTCAAGCGCAACTCTTGGCCCAAGACTCGTGGTGTTG
CCATGAACCCCGTCGATCACCCTCACGGTGGTGGNTACCACCAGCACAT
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