FC932539

Overview
NameFC932539
Unique NameFC932539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_HALLT (50S ribosomal protein L2P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.516e-36
Identity = 89/219 (40.64%), Postives = 119/219 (54.34%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGR I+ QR+GRG   F A +   KA    + L+  +      G +  I HD  R APLA+++F    +        +A EG+  G  I  G +A +  GN LPLA +PEG  + NVE   GD G   R SG   T++ H+ +     V+LPSG  K +    R  +G+VAGGGRT+KP +KAG   HK   +   +P+ RGVAMN VDHP GGG  QH
Sbjct:    1 MGRRIQGQRRGRGGPTFRAPSHRYKAELSHKKLEDVDT---ITGEIVGIEHDPARSAPLAEIEFEDDDR-----RLVLAPEGVRVGDTIQVGVSAEIKPGNTLPLAEIPEGVPVCNVESNRGDGGKFARASGVSATLLTHDRDVAV--VQLPSGEVKRLDPQCRATIGVVAGGGRTEKPFVKAGNKYHKMKARGTKYPRVRGVAMNAVDHPFGGGGRQH 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_HALWD (50S ribosomal protein L2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.980e-36
Identity = 86/219 (39.27%), Postives = 121/219 (55.25%), Query Frame = 2
Query:   44 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGR I+ QR+GRG S F A +   KA    +    +E+     G + +I HD  R AP+A V+F    +        +A EG+  G+ +  G +A +  GN LPL  +PEG  + NVE + GD G   R SG    ++ H+ +     ++LPSG  K +    +  +G+VAGGGRT+KP +KAG+  HK   +   WP+ RGVAMN VDHP GGG  QH
Sbjct:    1 MGRRIQGQRRGRGTSTFRAPSHRYKAELSHKQ---SESDDTITGTIVDIEHDPARSAPVAAVEFDDGDR-----RLVLAPEGIRVGETMQIGVSAEIKPGNTLPLREIPEGVPVCNVESQVGDGGKFARASGTSAQLMTHDRD--VVVIELPSGETKRLSPACQATIGVVAGGGRTEKPFVKAGKKHHKMKARGIKWPRVRGVAMNAVDHPFGGGGRQH 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METBF (50S ribosomal protein L2P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.377e-36
Identity = 89/219 (40.64%), Postives = 123/219 (56.16%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+ I +Q +GRG+  + A +   KA  +   +D    +   +G V  + HD  R AP+AKV F    +        +A+EG+  G  I  G +A +  GNI+P+  +PEG  I N+E K  D G   R+SG Y TV+ H  E  +T V +PSG  K +    R +VGIVAGGGR D+P LKAG+  HK   +   +P+  GVAMNPVDHP GGG  +H
Sbjct:    1 MGKRIISQNRGRGTPTYRAPSHKYKAELRHPRVD---ENTSIQGKVINLEHDPARSAPIAKVVFETGEE-----RLLLASEGIAVGSTIECGDDADVRPGNIVPIGKVPEGFFICNIESKPNDGGRFVRSSGVYATVVTH--ESNRTAVAMPSGNIKWLNPKCRAVVGIVAGGGRVDRPWLKAGKKYHKMKTRAAKYPRVSGVAMNPVDHPFGGGAWKH 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_CALMQ (50S ribosomal protein L2P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.377e-36
Identity = 85/218 (38.99%), Postives = 122/218 (55.96%), Query Frame = 2
Query:   44 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694
            MG+ I  QR GRG S F + +    AP ++      +     RG++KE++H  G  AP   V   +  +  +      A EG+Y G+ I  G +A +  GN++P+  +PEGT++ N+E++ GD G   R+SG Y  V+ H   D  T V+LPSG    + + AR  +GIVAGGGR +KP +KAG   H+   K   +PK RG AM+   HPHGGG HQ
Sbjct:    1 MGKKILVQRAGRGGSQFRSPSWRRIAPLRYVQFSEEQLKTTIRGIIKELVHVTGLNAPAMHVVLENGEEMYLP-----AVEGVYVGKIIEFGPDAKVEPGNVMPIGKIPEGTMVCNIEKRVGDGGKYARSSGTYGVVMIHR--DSTTLVQLPSGRMIEVDSRARATIGIVAGGGRIEKPFVKAGNKYHRARTKAWKYPKVRGKAMSAYAHPHGGGSHQ 211          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METMA (50S ribosomal protein L2P OS=Methanosarcina mazei GN=rpl2p PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.411e-36
Identity = 87/219 (39.73%), Postives = 125/219 (57.08%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+ + +Q +GRG+  + A +   KA  +   +D    +   +G V +I HD  R AP+AKV F +  +  ++     A+EG+  G  I  G +A +  GNI+P+ ++PEG  I N+E K  D G   R+SG Y TV+ H P   +T V +PSG  K +    R +VGIVAGGGR D+P LKAG+  HK   +   +P+   VAMNP DHP GGG  +H
Sbjct:    1 MGKRLISQNRGRGTPTYRAPSHKYKADLRHPRVD---ENTSLQGEVIDIEHDPARSAPIAKVAFENGEELFLL-----ASEGVAVGNIIECGDDAEVKPGNIVPIGNVPEGFFICNIESKPNDGGKFVRSSGVYATVVTHEPT--RTAVSMPSGNIKWLNPKCRAVVGIVAGGGRVDRPWLKAGKKYHKMKTRAAKYPRVSAVAMNPRDHPFGGGAWKH 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_SULAC (50S ribosomal protein L2P OS=Sulfolobus acidocaldarius GN=rpl2p PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.760e-36
Identity = 88/218 (40.37%), Postives = 123/218 (56.42%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694
            MG+ +  QR GRG I F + +     PA++  ++     G  +G + +I+H+ G  AP+ KV+  +  +F +      A +G+  GQ I  GKNA ++ GNI+ +  +PEGTVI NVE+  GD G   R +G+Y  + G      K  +KL S     +   AR  VGI+AGGG  +KPLLKAG    K+ V+   WP  RGVAMN V HPHGGG HQ
Sbjct:    1 MGKKLLQQRAGRGGINFRSPSWRRVGPARYPNIE-----GDHKGKIIDILHNPGVTAPVVKVKLDNGLQFYIP-----AVQGVAVGQEISIGKNATISNGNIVEVGQLPEGTVICNVEKLKGDGGKFARAAGSYAVISGK--AGNKVLIKLSSEKIVEVSQNARATVGIIAGGGFVEKPLLKAGNNYWKYRVRAVKWPVVRGVAMNAVSHPHGGGLHQ 206          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_THEON (50S ribosomal protein L2P OS=Thermococcus onnurineus (strain NA1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.523e-36
Identity = 85/217 (39.17%), Postives = 123/217 (56.68%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYH 691
            MG+ +  QR+G+G+  F A +   +   ++  L+  +      G V EI+HD GR AP+A+V+F +  +     +  IA EG+  G+ I  G NA + +GN LPLA +PEG+ + ++E   GD G   R  G Y  V+    E  K  V+LPSG  K      R  +G+VAGGGR +KP++KAG+A +    +   WPK RGV MN V+HPHGG  H
Sbjct:    1 MGKSLIQQRRGKGTTTFRAPSHRYRGAVRYVPLNLTKEKTLV-GKVVEILHDPGRTAPVARVKFENGME-----KLIIAPEGILVGEEIAIGPNAPIKIGNTLPLAMIPEGSYVYDIEGTPGDGGKYVRAGGVYALVVSR--EKDKVIVQLPSGELKQFNPMCRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METS5 (50S ribosomal protein L2P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.523e-36
Identity = 91/219 (41.55%), Postives = 124/219 (56.62%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTR-LNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFI-ANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694
            MG+ +  QR GRG+I   N   L     ++ T+      G+    V +I+H+ G   P+AKV+     +F      FI A +G+ +GQ I  G+ +  ++GNI+P   +PEG  ++NVE   GD G   RT+G+Y  V+G +  +GK  ++LPSG  K I   A   VG VAGGG  +KPLLKAG    K+ VK   WP  RGVAMN V HPHGGG HQ
Sbjct:    1 MGKKLLQQRAGRGNINFRNPGWLRVGKVRYPTIT-----GHHIAKVVDILHNPGMTEPVAKVKLDTGIQF------FIPAVQGLISGQKIEVGEGSPASLGNIVPAKDLPEGVYVSNVELHRGDGGRYARTAGSYAIVVGKS--EGKVILRLPSGKIKEIDENALVTVGTVAGGGVLEKPLLKAGNNYWKYKVKATKWPDVRGVAMNVVSHPHGGGLHQ 206          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METAC (50S ribosomal protein L2P OS=Methanosarcina acetivorans GN=rpl2p PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.859e-35
Identity = 88/219 (40.18%), Postives = 123/219 (56.16%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+ + +Q +GRG+  + A +   KA  +   +D    +   RG V  I HD  R AP+AKV F +  +  ++     A+EG+  G  I  G +A +  GNI+P+ ++PEG  I NVE K  D G   R+SG Y TV+ H  E  +T V +PSG  K +    R +VGIVAG GR D+P LKAG+  HK   +   +P+   VAMNP DHP GGG  +H
Sbjct:    1 MGKRLISQNRGRGTPTYRAPSHKYKADLRHPRVD---ENSSLRGEVVGIEHDPARSAPIAKVAFENGEELFLL-----ASEGIAVGNIIECGDDAEVKPGNIVPIGNVPEGFFICNVESKPNDGGKFVRSSGVYATVVTH--EATRTAVSMPSGNIKWLNPKCRAVVGIVAGSGRVDRPWLKAGKKYHKMKTRAAKYPRVSAVAMNPRDHPFGGGAWKH 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METLZ (50S ribosomal protein L2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.419e-34
Identity = 86/219 (39.27%), Postives = 114/219 (52.05%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG  I  Q +G+G   + A +   KA  +     F  A    R  V +I HD  R  P+A V+       K   E  +  EG+  GQ +  G  A +  GN LPL+++P G  + N+E + GD G   R+SG    +IG +   GK  V++PSG  K         VG+VAGGGR DKP+LKAG+  HK       WP+ RGVAMN +DHP GGG HQH
Sbjct:    1 MGHRISTQSRGKGGPTYRAPSHQYKAELKH----FGSALETVRATVIDIEHDPARHTPIAVVKIEGKASDKK--EYALITEGVGIGQELVWGPEATVVNGNSLPLSAIPTGVAVCNIEARPGDGGKFVRSSGVQAVIIGKSA--GKVGVRMPSGKPKWFNEACLATVGLVAGGGRIDKPILKAGKQYHKMKTSATRWPRVRGVAMNVIDHPFGGGGHQH 211          
The following BLAST results are available for this feature:
BLAST of FC932539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_HALLT1.516e-3640.6450S ribosomal protein L2P OS=Halorubrum lacusprofu... [more]
RL2_HALWD1.980e-3639.2750S ribosomal protein L2P OS=Haloquadratum walsbyi... [more]
RL2_METBF3.377e-3640.6450S ribosomal protein L2P OS=Methanosarcina barker... [more]
RL2_CALMQ3.377e-3638.9950S ribosomal protein L2P OS=Caldivirga maquilinge... [more]
RL2_METMA4.411e-3639.7350S ribosomal protein L2P OS=Methanosarcina mazei ... [more]
RL2_SULAC5.760e-3640.3750S ribosomal protein L2P OS=Sulfolobus acidocalda... [more]
RL2_THEON7.523e-3639.1750S ribosomal protein L2P OS=Thermococcus onnurine... [more]
RL2_METS57.523e-3641.5550S ribosomal protein L2P OS=Metallosphaera sedula... [more]
RL2_METAC2.859e-3540.1850S ribosomal protein L2P OS=Methanosarcina acetiv... [more]
RL2_METLZ1.419e-3439.2750S ribosomal protein L2P OS=Methanocorpusculum la... [more]

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Properties
Property NameValue
Genbank descriptionC34209F10EF PostHarveN Citrus clementina cDNA clone C34209F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932539 ID=FC932539; Name=FC932539; organism=Citrus clementina; type=EST; length=699bp
GAACTCGTCAACGACAAGCCTATATCACTTCGAGACAGTCGCCATGGGTC
GTGTCATCCGCAACCAGAGGAAGGGTCGTGGCTCCATTTTCACGGCCAAC
ACCCGCCTGAACAAGGCCCCTGCCCAATTCCGGACCCTCGACTTCGCTGA
GGCTCACGGTTACACCCGTGGTGTCGTCAAGGAGATCATCCACGATGCCG
GCCGTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGCCACCCCTACAAGTTC
AAGATGATCACCGAGACTTTCATCGCCAACGAGGGCATGTACACCGGCCA
GTTCATCTACGCCGGTAAGAACGCTGCCCTGACCGTCGGCAACATTCTTC
CTCTCGCCTCCATGCCCGAGGGTACCGTCATCACCAACGTCGAGGAGAAG
GCTGGTGACCGTGGTGCGCTTGGCCGTACCTCCGGTAACTACGTTACTGT
TATTGGCCACAACCCCGAGGATGGCAAGACCCGTGTCAAGCTCCCCTCCG
GTGCCAAGAAGGTCATCAAGAACACCGCTCGCGGTATGGTTGGTATCGTT
GCCGGTGGTGGCCGTACCGACAAGCCTTTGCTCAAGGCTGGTCGTGCCAA
GCACAAGTTCGCCGTCAAGCGCAACTCTTGGCCCAAGACTCGTGGTGTTG
CCATGAACCCCGTCGATCACCCTCACGGTGGTGGNTACCACCAGCACAT
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