FC932539

Overview
NameFC932539
Unique NameFC932539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15529 contig Ccv1_Contig15529:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_ENTHI (60S ribosomal protein L8 (Fragment) OS=Entamoeba histolytica GN=RPL8 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.853e-34
Identity = 66/116 (56.90%), Postives = 87/116 (75.00%), Query Frame = 2
Query:  161 YTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAK 508
            ++RG+VK I HD GRGAPLA+V FR+P ++ +  E FI  EG+Y+GQ+IY G  A+L +GN+LP+   PEGTV+ NVE K GDRG + R SGNY TVI HN ++  TR++LPSGAK
Sbjct:   31 HSRGLVKSIEHDPGRGAPLARVVFRNPRQYGLDKELFICAEGLYSGQYIYCGSKASLHIGNVLPIGQCPEGTVVCNVESKPGDRGIIARASGNYATVISHNADNETTRIRLPSGAK 146          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METBU (50S ribosomal protein L2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.201e-33
Identity = 85/219 (38.81%), Postives = 116/219 (52.97%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            M + I +Q +GRGS  + A +   KA  +   +D         G V  I HD  R AP+A V F +  K     +  +  EG+  G+ +  G +A +  GN LPLA +PEG  I N+E K  D G   R+SG Y T++    E  K  V++PSG  K      R  +GIVAGGGR D+P LKAG+  HK   +   +P+  G+AMN VDHP GGG  +H
Sbjct:    1 MAKRIISQNRGRGSPTYRAPSHKYKAELKHPRVD---EESTLNGTVIGIEHDPARSAPIAMVAFENGKK-----QFIVVPEGISVGEKLSCGVSAEVKPGNTLPLAEIPEGIPICNIESKPNDGGQYARSSGVYATLVSR--ELSKVVVRMPSGVLKWFHPKCRATIGIVAGGGRVDRPFLKAGKKYHKMKARAAKYPRVSGIAMNVVDHPFGGGNRKH 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METPE (50S ribosomal protein L2P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.271e-31
Identity = 82/219 (37.44%), Postives = 113/219 (51.60%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG  I+ Q +GRG   + A +   KA  +    D        RGV+ +I HD  R  P+A V+     K   +  T    EG+  G  +  G  A +  GN LP++ +P G+ I N+E + GD G   R SG    +I    +  +  VK+PSG  K   +     VG+VAGGGR +KP +KAG+  HK   +   WP+ RGVAMN +DHP GGG HQH
Sbjct:    1 MGHRIKTQNRGRGGPTYRAPSHQYKAELKHLGNDKVTV----RGVIIDIEHDPARHTPIALVRLEGEGKKVYLLVT----EGLGVGDQVAWGPEAEVKNGNTLPISKIPTGSYICNIEARPGDGGKFVRASGVQAIIIDKTVD--RVGVKMPSGKMKWFSSRCLATVGVVAGGGRGEKPFVKAGKKFHKVKSQATYWPRVRGVAMNVIDHPFGGGGHQH 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METB6 (50S ribosomal protein L2P OS=Methanoregula boonei (strain 6A8) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.517e-31
Identity = 80/219 (36.53%), Postives = 112/219 (51.14%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG  I  Q +GRG   + A +   KA  +       +      G + +I HD  R AP+A VQ     K  ++       EG+  G+ +  G +  +  GN LPL S+P G+ I N+E +  D G   R++G    V+    +  +  V++PSG  K      R  VGIVAGGGR +KP +KAG   HK     ++WP+ RGVAMN +DHP GGG HQH
Sbjct:    1 MGHRITTQNRGRGGPTYRAPSHRYKAALKH----IGDGTKSISGSIIDIEHDPARNAPIALVQLEDGSKVYILV-----TEGIGIGETVAWGADVKVKNGNTLPLQSIPTGSYICNIESRPNDGGKFVRSTGVQAVVVDKIGD--RIGVRMPSGKTKWFNARCRATVGIVAGGGRVEKPFVKAGNKSHKMRNTASNWPRVRGVAMNVIDHPFGGGGHQH 208          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_CENSY (50S ribosomal protein L2P OS=Cenarchaeum symbiosum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29
Identity = 77/219 (35.16%), Postives = 115/219 (52.51%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+    +R+GRG + F A T    A A++   +  E      G V +++H+ GR APLAK++F        I     A  G   G  +  G  + +  GN++ + ++P+GT + NVE+  GD GA+ +++G   TV  H   +G   +KLPSG    +    R MVG +AGGG +++P + AG    +F  K   +P  RGVA     HPHGGG HQH
Sbjct:    1 MGKRPLVRRRGRGGMQFRAATTGKIARAKYPAFELGEQR---EGTVIDLVHERGRDAPLAKIRFEDG-----IVSYVPAVLGTRVGSSMNFGLKSEIRDGNVISVQNIPDGTTVCNVEKHYGDGGAIVKSAGGNATVFSHG--EGGVVLKLPSGRFSTLNPKNRAMVGTLAGGGVSERPFMSAGGKWRRFRSKGRKYPIVRGVAQAAYVHPHGGGRHQH 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_NITMS (50S ribosomal protein L2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29
Identity = 75/221 (33.94%), Postives = 116/221 (52.49%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKA--PAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFI-ANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+    +R+GRG     +T   K    A +     +E H    G + +++H+ GR APLAKV+F         + +F+ A  G   G+ +  G  + +  GN++ + ++P+GT++ N+E+  GD GA+ +++G   TV  H  E     VKLPSG    +    R M+G +AGGG +++P + AG     F  K   +P  RGVA     HPHGGG HQH
Sbjct:    1 MGKRPLVRRRGRGGNQFRSTSTGKVGTKANYPRFPLSEQH---EGEIIDLVHERGREAPLAKVRFEDG------SVSFVPAVLGAKVGETLQFGLKSKIEKGNVISIQNIPDGTIVCNIEKHFGDGGAIVKSAGTDATVFSHGDEG--VTVKLPSGKFTTLNPKNRAMIGTLAGGGASERPFMSAGGKWRNFKAKGKKYPIVRGVAQAAYVHPHGGGRHQH 210          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METMJ (50S ribosomal protein L2P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 75/216 (34.72%), Postives = 104/216 (48.15%), Query Frame = 2
Query:   50 RVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            R+I   R   G  + A +   KA  +    + A       G V +I HD  R AP+A  +     K  ++     A EG+  G  +  G    +  GN LPL  +P G  + N+E +  D G   R+SG    VIG   +DG+  +++PSG  K         VGIVAGGGR +KP +KAG+           WP+ +GV MN +DHP GGG HQH
Sbjct:    4 RIIAQNRGKGGPTYRAPSHRYKAALRHAGKNDA----LVSGNVIDIEHDPARHAPIALARLDSGEKIYVL-----ATEGLGVGDTVSWGTGGTVKNGNTLPLGEIPVGAYVCNIEARPNDGGKFVRSSGVQALVIG-KADDGRVGIRMPSGKNKWFNGACMATVGIVAGGGRGEKPFVKAGKKHFHVRSSSERWPRVKGVCMNVIDHPFGGGGHQH 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METHJ (50S ribosomal protein L2P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 79/219 (36.07%), Postives = 110/219 (50.23%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFA-EAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG  I  Q +G G   T     ++  A  + L  A E   Y    + +I HD  R  P+A V         ++       EGM  G  +  G +A +  GN LPL  +P G+ + N+E    D G   R SG   TV   +  +G+  V++PSG+ K      R  +GIVAGGGR++KP +KAG+  HK     ++WP+ RG AMN +DHP GGG HQH
Sbjct:    1 MGHRITTQSRGHGGP-TYRAPSHRYKAALKHLGRAGETVSYK---IIDIEHDPARHTPIALVDVPDGENTYVLV-----TEGMGIGDVLTWGADAEIRNGNTLPLQEIPTGSSVCNIEAYPNDGGKFVRASGVQATVT--DKMEGRVAVRMPSGSTKWFNGQCRATIGIVAGGGRSEKPFVKAGKKYHKMKNTASNWPRVRGFAMNVIDHPFGGGGHQH 208          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_THEVO (50S ribosomal protein L2P OS=Thermoplasma volcanium GN=rpl2p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.421e-28
Identity = 79/218 (36.24%), Postives = 109/218 (50.00%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+ I  QR+G GS+      + ++P+    +D          VVK+IIH  GR +PL ++      K   I  T     G Y GQ I AG    +  G    LA++P+G+ + N+E   GD G   R++G +  V+ H     +  +KLPSG+ +      R  VG+VA  G  D P+LKAG   H    K       RGVAMN V+HPHGGG HQH
Sbjct:    1 MGKHIIPQRRGHGSL------VYRSPSHRHVVDVKHLKP-GEYVVKDIIHAPGRNSPLLELVDSTGKKVYQIAFT-----GAYVGQKIVAGNVDTINPGTTTVLANIPDGSYVYNIESSPGDGGEFCRSAGTFALVVSHG---SRVTLKLPSGSMRDFDPRCRATVGVVAASGIIDAPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHPHGGGNHQH 203          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_THEAC (50S ribosomal protein L2P OS=Thermoplasma acidophilum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.742e-27
Identity = 77/218 (35.32%), Postives = 109/218 (50.00%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+ I  QR+G GS+      + ++P+     +       T  V+K+IIH  GR APL ++      K   I  T     G + GQ I AG   +++ G    LA++P+G+ + N+E   GD G   R++G +  V+ H        +KLPSG  +      R  +G+VA  G  D P+LKAG   H    K       RGVAMN V+HPHGGG HQH
Sbjct:    1 MGKHIIPQRRGHGSL------VYRSPSHRHITEVKHVDQGTY-VIKDIIHAPGRNAPLLELMGSDGKKAYQIAFT-----GAFVGQNIVAGNVDSVSPGTTTVLANIPDGSYVYNIESSPGDGGEFCRSAGTFALVVSHGQH---VTLKLPSGRMRDFDPRCRATLGVVAASGIKDPPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHPHGGGNHQH 203          
The following BLAST results are available for this feature:
BLAST of FC932539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL8_ENTHI1.853e-3456.9060S ribosomal protein L8 (Fragment) OS=Entamoeba h... [more]
RL2_METBU1.201e-3338.8150S ribosomal protein L2P OS=Methanococcoides burt... [more]
RL2_METPE3.271e-3137.4450S ribosomal protein L2P OS=Methanosphaerula palu... [more]
RL2_METB69.517e-3136.5350S ribosomal protein L2P OS=Methanoregula boonei ... [more]
RL2_CENSY5.222e-2935.1650S ribosomal protein L2P OS=Cenarchaeum symbiosum... [more]
RL2_NITMS6.820e-2933.9450S ribosomal protein L2P OS=Nitrosopumilus mariti... [more]
RL2_METMJ1.984e-2834.7250S ribosomal protein L2P OS=Methanoculleus marisn... [more]
RL2_METHJ1.984e-2836.0750S ribosomal protein L2P OS=Methanospirillum hung... [more]
RL2_THEVO4.421e-2836.2450S ribosomal protein L2P OS=Thermoplasma volcaniu... [more]
RL2_THEAC3.742e-2735.3250S ribosomal protein L2P OS=Thermoplasma acidophi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34209F10EF PostHarveN Citrus clementina cDNA clone C34209F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932539 ID=FC932539; Name=FC932539; organism=Citrus clementina; type=EST; length=699bp
GAACTCGTCAACGACAAGCCTATATCACTTCGAGACAGTCGCCATGGGTC
GTGTCATCCGCAACCAGAGGAAGGGTCGTGGCTCCATTTTCACGGCCAAC
ACCCGCCTGAACAAGGCCCCTGCCCAATTCCGGACCCTCGACTTCGCTGA
GGCTCACGGTTACACCCGTGGTGTCGTCAAGGAGATCATCCACGATGCCG
GCCGTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGCCACCCCTACAAGTTC
AAGATGATCACCGAGACTTTCATCGCCAACGAGGGCATGTACACCGGCCA
GTTCATCTACGCCGGTAAGAACGCTGCCCTGACCGTCGGCAACATTCTTC
CTCTCGCCTCCATGCCCGAGGGTACCGTCATCACCAACGTCGAGGAGAAG
GCTGGTGACCGTGGTGCGCTTGGCCGTACCTCCGGTAACTACGTTACTGT
TATTGGCCACAACCCCGAGGATGGCAAGACCCGTGTCAAGCTCCCCTCCG
GTGCCAAGAAGGTCATCAAGAACACCGCTCGCGGTATGGTTGGTATCGTT
GCCGGTGGTGGCCGTACCGACAAGCCTTTGCTCAAGGCTGGTCGTGCCAA
GCACAAGTTCGCCGTCAAGCGCAACTCTTGGCCCAAGACTCGTGGTGTTG
CCATGAACCCCGTCGATCACCCTCACGGTGGTGGNTACCACCAGCACAT
back to top