FC932539
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_ENTHI (60S ribosomal protein L8 (Fragment) OS=Entamoeba histolytica GN=RPL8 PE=2 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.853e-34 Identity = 66/116 (56.90%), Postives = 87/116 (75.00%), Query Frame = 2 Query: 161 YTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAK 508 ++RG+VK I HD GRGAPLA+V FR+P ++ + E FI EG+Y+GQ+IY G A+L +GN+LP+ PEGTV+ NVE K GDRG + R SGNY TVI HN ++ TR++LPSGAK Sbjct: 31 HSRGLVKSIEHDPGRGAPLARVVFRNPRQYGLDKELFICAEGLYSGQYIYCGSKASLHIGNVLPIGQCPEGTVVCNVESKPGDRGIIARASGNYATVISHNADNETTRIRLPSGAK 146
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METBU (50S ribosomal protein L2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl2p PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.201e-33 Identity = 85/219 (38.81%), Postives = 116/219 (52.97%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 M + I +Q +GRGS + A + KA + +D G V I HD R AP+A V F + K + + EG+ G+ + G +A + GN LPLA +PEG I N+E K D G R+SG Y T++ E K V++PSG K R +GIVAGGGR D+P LKAG+ HK + +P+ G+AMN VDHP GGG +H Sbjct: 1 MAKRIISQNRGRGSPTYRAPSHKYKAELKHPRVD---EESTLNGTVIGIEHDPARSAPIAMVAFENGKK-----QFIVVPEGISVGEKLSCGVSAEVKPGNTLPLAEIPEGIPICNIESKPNDGGQYARSSGVYATLVSR--ELSKVVVRMPSGVLKWFHPKCRATIGIVAGGGRVDRPFLKAGKKYHKMKARAAKYPRVSGIAMNVVDHPFGGGNRKH 209
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METPE (50S ribosomal protein L2P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl2p PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.271e-31 Identity = 82/219 (37.44%), Postives = 113/219 (51.60%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MG I+ Q +GRG + A + KA + D RGV+ +I HD R P+A V+ K + T EG+ G + G A + GN LP++ +P G+ I N+E + GD G R SG +I + + VK+PSG K + VG+VAGGGR +KP +KAG+ HK + WP+ RGVAMN +DHP GGG HQH Sbjct: 1 MGHRIKTQNRGRGGPTYRAPSHQYKAELKHLGNDKVTV----RGVIIDIEHDPARHTPIALVRLEGEGKKVYLLVT----EGLGVGDQVAWGPEAEVKNGNTLPISKIPTGSYICNIEARPGDGGKFVRASGVQAIIIDKTVD--RVGVKMPSGKMKWFSSRCLATVGVVAGGGRGEKPFVKAGKKFHKVKSQATYWPRVRGVAMNVIDHPFGGGGHQH 209
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METB6 (50S ribosomal protein L2P OS=Methanoregula boonei (strain 6A8) GN=rpl2p PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 9.517e-31 Identity = 80/219 (36.53%), Postives = 112/219 (51.14%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MG I Q +GRG + A + KA + + G + +I HD R AP+A VQ K ++ EG+ G+ + G + + GN LPL S+P G+ I N+E + D G R++G V+ + + V++PSG K R VGIVAGGGR +KP +KAG HK ++WP+ RGVAMN +DHP GGG HQH Sbjct: 1 MGHRITTQNRGRGGPTYRAPSHRYKAALKH----IGDGTKSISGSIIDIEHDPARNAPIALVQLEDGSKVYILV-----TEGIGIGETVAWGADVKVKNGNTLPLQSIPTGSYICNIESRPNDGGKFVRSTGVQAVVVDKIGD--RIGVRMPSGKTKWFNARCRATVGIVAGGGRVEKPFVKAGNKSHKMRNTASNWPRVRGVAMNVIDHPFGGGGHQH 208
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_CENSY (50S ribosomal protein L2P OS=Cenarchaeum symbiosum GN=rpl2p PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29 Identity = 77/219 (35.16%), Postives = 115/219 (52.51%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MG+ +R+GRG + F A T A A++ + E G V +++H+ GR APLAK++F I A G G + G + + GN++ + ++P+GT + NVE+ GD GA+ +++G TV H +G +KLPSG + R MVG +AGGG +++P + AG +F K +P RGVA HPHGGG HQH Sbjct: 1 MGKRPLVRRRGRGGMQFRAATTGKIARAKYPAFELGEQR---EGTVIDLVHERGRDAPLAKIRFEDG-----IVSYVPAVLGTRVGSSMNFGLKSEIRDGNVISVQNIPDGTTVCNVEKHYGDGGAIVKSAGGNATVFSHG--EGGVVLKLPSGRFSTLNPKNRAMVGTLAGGGVSERPFMSAGGKWRRFRSKGRKYPIVRGVAQAAYVHPHGGGRHQH 209
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_NITMS (50S ribosomal protein L2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29 Identity = 75/221 (33.94%), Postives = 116/221 (52.49%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGSIFTANTRLNKA--PAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFI-ANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MG+ +R+GRG +T K A + +E H G + +++H+ GR APLAKV+F + +F+ A G G+ + G + + GN++ + ++P+GT++ N+E+ GD GA+ +++G TV H E VKLPSG + R M+G +AGGG +++P + AG F K +P RGVA HPHGGG HQH Sbjct: 1 MGKRPLVRRRGRGGNQFRSTSTGKVGTKANYPRFPLSEQH---EGEIIDLVHERGREAPLAKVRFEDG------SVSFVPAVLGAKVGETLQFGLKSKIEKGNVISIQNIPDGTIVCNIEKHFGDGGAIVKSAGTDATVFSHGDEG--VTVKLPSGKFTTLNPKNRAMIGTLAGGGASERPFMSAGGKWRNFKAKGKKYPIVRGVAQAAYVHPHGGGRHQH 210
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METMJ (50S ribosomal protein L2P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28 Identity = 75/216 (34.72%), Postives = 104/216 (48.15%), Query Frame = 2 Query: 50 RVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 R+I R G + A + KA + + A G V +I HD R AP+A + K ++ A EG+ G + G + GN LPL +P G + N+E + D G R+SG VIG +DG+ +++PSG K VGIVAGGGR +KP +KAG+ WP+ +GV MN +DHP GGG HQH Sbjct: 4 RIIAQNRGKGGPTYRAPSHRYKAALRHAGKNDA----LVSGNVIDIEHDPARHAPIALARLDSGEKIYVL-----ATEGLGVGDTVSWGTGGTVKNGNTLPLGEIPVGAYVCNIEARPNDGGKFVRSSGVQALVIG-KADDGRVGIRMPSGKNKWFNGACMATVGIVAGGGRGEKPFVKAGKKHFHVRSSSERWPRVKGVCMNVIDHPFGGGGHQH 209
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METHJ (50S ribosomal protein L2P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl2p PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28 Identity = 79/219 (36.07%), Postives = 110/219 (50.23%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFA-EAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MG I Q +G G T ++ A + L A E Y + +I HD R P+A V ++ EGM G + G +A + GN LPL +P G+ + N+E D G R SG TV + +G+ V++PSG+ K R +GIVAGGGR++KP +KAG+ HK ++WP+ RG AMN +DHP GGG HQH Sbjct: 1 MGHRITTQSRGHGGP-TYRAPSHRYKAALKHLGRAGETVSYK---IIDIEHDPARHTPIALVDVPDGENTYVLV-----TEGMGIGDVLTWGADAEIRNGNTLPLQEIPTGSSVCNIEAYPNDGGKFVRASGVQATVT--DKMEGRVAVRMPSGSTKWFNGQCRATIGIVAGGGRSEKPFVKAGKKYHKMKNTASNWPRVRGFAMNVIDHPFGGGGHQH 208
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_THEVO (50S ribosomal protein L2P OS=Thermoplasma volcanium GN=rpl2p PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.421e-28 Identity = 79/218 (36.24%), Postives = 109/218 (50.00%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MG+ I QR+G GS+ + ++P+ +D VVK+IIH GR +PL ++ K I T G Y GQ I AG + G LA++P+G+ + N+E GD G R++G + V+ H + +KLPSG+ + R VG+VA G D P+LKAG H K RGVAMN V+HPHGGG HQH Sbjct: 1 MGKHIIPQRRGHGSL------VYRSPSHRHVVDVKHLKP-GEYVVKDIIHAPGRNSPLLELVDSTGKKVYQIAFT-----GAYVGQKIVAGNVDTINPGTTTVLANIPDGSYVYNIESSPGDGGEFCRSAGTFALVVSHG---SRVTLKLPSGSMRDFDPRCRATVGVVAASGIIDAPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHPHGGGNHQH 203
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_THEAC (50S ribosomal protein L2P OS=Thermoplasma acidophilum GN=rpl2p PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.742e-27 Identity = 77/218 (35.32%), Postives = 109/218 (50.00%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MG+ I QR+G GS+ + ++P+ + T V+K+IIH GR APL ++ K I T G + GQ I AG +++ G LA++P+G+ + N+E GD G R++G + V+ H +KLPSG + R +G+VA G D P+LKAG H K RGVAMN V+HPHGGG HQH Sbjct: 1 MGKHIIPQRRGHGSL------VYRSPSHRHITEVKHVDQGTY-VIKDIIHAPGRNAPLLELMGSDGKKAYQIAFT-----GAFVGQNIVAGNVDSVSPGTTTVLANIPDGSYVYNIESSPGDGGEFCRSAGTFALVVSHGQH---VTLKLPSGRMRDFDPRCRATLGVVAASGIKDPPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHPHGGGNHQH 203 The following BLAST results are available for this feature:
BLAST of FC932539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932539 ID=FC932539; Name=FC932539; organism=Citrus clementina; type=EST; length=699bpback to top |