FC932539

Overview
NameFC932539
Unique NameFC932539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_NANEQ (50S ribosomal protein L2P OS=Nanoarchaeum equitans GN=rpl2p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.204e-25
Identity = 76/220 (34.55%), Postives = 112/220 (50.91%), Query Frame = 2
Query:   44 MGRV-IRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+V +  QR+GRGS  F + T       +  T D     G    ++K+ IH A    PL  V++ +  +         A  G+  G  +Y GK A   +G+I PL+ +PEGT I  +E   GD G L R SG++  ++    +  K  V+LPSG  K +   AR ++G++AGGGR +KP +KAG   +  + +   WP   GV  N  DHP GG  H +
Sbjct:    1 MGKVRLLVQRRGRGSPTFRSPTHRAAGKVKIPTFDGDLVKGKVVALIKDSIHYA----PLMVVKWENGAQ-----SLLPAPLGISVGDTVYYGKEAPNAIGSIKPLSEIPEGTKIYMLENNPGDGGKLVRASGDFALLVQKLGD--KVIVQLPSGQFKTLSANARAVIGVIAGGGRKEKPFVKAGNKYYWASSRNRHWPVVNGVKKNASDHPFGGKRHSN 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_PICTO (50S ribosomal protein L2P OS=Picrophilus torridus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.058e-24
Identity = 77/219 (35.16%), Postives = 108/219 (49.32%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKT-RGVAMNPVDHPHGGGYHQH 697
            MG+ I  QR+G GS+      + ++P+     D       T  + ++II   GR  P+  ++     K  MI     A  G Y  Q I+ G   +  +G++  LA++P+G+ + N+E   GD G   R +G    VI H        +KLPSG  K      R  VG +AG G  D P+LKAG    K+   +   P T RGVAMN V+HPHGGG HQH
Sbjct:    1 MGKHIVAQRRGHGSL------VYRSPSHRHLGDIKYPRDGTYKI-EDIIQAPGRNTPVLLIRNEKNEKNYMI-----AFNGAYVNQEIHVGDIDSPAIGDVTYLANIPDGSYVYNIESIPGDGGKFCRAAGTAALVISHG---AYVSLKLPSGVNKEFHPRCRATVGFIAGSGARDIPILKAG-THIKYLQSKAKRPYTVRGVAMNAVNHPHGGGNHQH 203          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STRSV (50S ribosomal protein L2 OS=Streptococcus sanguinis (strain SK36) GN=rplB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 73/187 (39.04%), Postives = 98/187 (52.41%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VVK I +D  R A +A V +    K  +I     A +G+  GQ I +G  A + VGN LPLA++P GT++ N+E K G  G L R +G    V+G   ++GK T V+L SG  ++I  T R  VG+V         L KAGR++ K        P  RG  MNP DHPHGGG
Sbjct:   62 YRLIDFKRNKDAVEAVVKTIEYDPNRSANIALVHYTDGVKAYII-----APKGLEVGQRIVSGPEADIKVGNALPLANIPVGTLVHNIELKPGRGGELVRAAGASAQVLG---QEGKYTLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWK-----GIRPTVRGSVMNPNDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STRGC (50S ribosomal protein L2 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rplB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 73/187 (39.04%), Postives = 98/187 (52.41%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VVK I +D  R A +A V +    K  +I     A +G+  GQ I +G  A + VGN LPLA++P GT++ N+E K G  G L R +G    V+G   ++GK T V+L SG  ++I  T R  VG+V         L KAGR++ K        P  RG  MNP DHPHGGG
Sbjct:   62 YRLIDFKRNKDAVEAVVKTIEYDPNRSANIALVHYTDGVKAYII-----APKGLEVGQRIVSGPEADIKVGNALPLANIPVGTLVHNIELKPGRGGELVRAAGASAQVLG---QEGKYTLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWK-----GIRPTVRGSVMNPNDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_JANSC (50S ribosomal protein L2 OS=Jannaschia sp. (strain CCS1) GN=rplB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.304e-23
Identity = 66/218 (30.28%), Postives = 106/218 (48.62%), Query Frame = 2
Query:   32 ETVAMGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +++  G   +  R   G I TA  R   A   +R +DF          V+ I +D  R A +A V++    +        +A + +  G  + A K A +  GN +P + +P GT++ N+E K G  G + R +G Y   +G   + G  +++L SG  ++++      VG V+    +++ L KAGR +H         P  RGVAMNP+DHPHGGG
Sbjct:   31 KSLTEGLTKKGGRNNTGRI-TARRRGGGAKRLYRIVDFKRTKFDVSATVERIEYDPNRTAFIALVRYEDGEQ-----NYILAPQRLGVGDKVVASKKADIKPGNAMPFSGLPIGTIVHNIELKPGKGGQIARAAGTYAQFVGR--DGGYAQIRLSSGELRLVRQECMATVGAVSNPDNSNQNLGKAGRVRH-----MGKRPSVRGVAMNPIDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_MYCAP (50S ribosomal protein L2 OS=Mycoplasma agalactiae (strain PG2) GN=rplB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.539e-23
Identity = 67/206 (32.52%), Postives = 102/206 (49.51%), Query Frame = 2
Query:   68 RKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            R  +G I T   +  +    +R +DF          VK I +D  R A +  + +    K        +A EG+  GQ + +G N  + VGN LPL+++PEGT + NVE + G  G + R++G    ++G + +     ++L SG  + I    R  +G V  G  +   L KAGR++H   V+    P  RG  MNP+DHPHGGG
Sbjct:   44 RNNQGKI-TVRHQGGRVKRYYRIIDFKRNKDDIPATVKSIEYDPNRSANICLLAYADGEK-----RYILAPEGIKVGQKVVSGNNVDILVGNSLPLSNIPEGTFVHNVEMQPGGGGIIARSAGTSAQILGKDDDGKYVVLRLKSGEMRRILARCRATIGTVGNGEHSLVLLGKAGRSRH-LGVR----PTVRGSVMNPIDHPHGGG 238          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STRU0 (50S ribosomal protein L2 OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rplB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22
Identity = 73/191 (38.22%), Postives = 98/191 (51.31%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSW----PKTRGVAMNPVDHPHGGG 685
            +R +DF         VVK I +D  R A +A V +    K  +I     A +G+  GQ I +G  A + +GN LPLA++P GTVI N+E K G  G L R +G    V+G   ++GK   V+L SG  ++I  T R  +G V   G   + L+  G+A       RN W    P  RG  MNP DHPHGGG
Sbjct:   62 YRVIDFKRNKDNVEAVVKTIEYDPNRTANIALVHYTDGVKAYII-----APKGLEVGQRIISGPEADIKIGNALPLANIPVGTVIHNIEMKPGKGGELVRAAGASAQVLG---QEGKYVLVRLQSGEVRMILGTCRATIGSV---GNEQQSLVNIGKA------GRNRWKGVRPTVRGSVMNPNDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_OCEIH (50S ribosomal protein L2 OS=Oceanobacillus iheyensis GN=rplB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22
Identity = 71/191 (37.17%), Postives = 99/191 (51.83%), Query Frame = 2
Query:  125 QFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSW----PKTRGVAMNPVDHPHGGG 685
            Q+R +DF        G V  I +D  R A +A V +    K        IA +G+  GQ I +G+NA + +GN LPL S+P GTVI N+E K G  G + R++G    ++G   E+  T V+L SG  ++I  T R  +G V   G  +  L++ G+A       R+ W    P  RG  MNP DHPHGGG
Sbjct:   61 QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALVHYADGEK-----RYIIAPKGIKVGQEIESGENADIKLGNALPLGSIPVGTVIHNIELKPGRGGQIARSAGAEAQILGR--EEKYTLVRLSSGEVRLILTTCRATIGQV---GNIEHELVRVGKA------GRSRWKGIRPTVRGSVMNPNDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_LACS1 (50S ribosomal protein L2 OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=rplB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 69/189 (36.51%), Postives = 104/189 (55.03%), Query Frame = 2
Query:  125 QFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRA-KHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            ++R +DF          VK I +D  R A +A + +    K        +A +G+  GQ + +GK+  + VGN LPLA++P GTVI N+E K G  G L R++G    ++G   ++GK   ++L SG  ++I  T R  +G V   G     L+K G+A + ++A KR   P++RG  MNP DHPHGGG
Sbjct:   61 KYRLIDFKRVKDNVPATVKAIEYDPNRSANIALLVYADGVK-----SYILAPKGLKVGQVVESGKDVDIKVGNTLPLANIPVGTVIHNIELKPGKGGQLVRSAGTSAQLLG---KEGKYAIIRLTSGEVRMILVTCRATIGAV---GNEQHELIKVGKAGRARWAGKR---PQSRGSVMNPNDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STRS7 (50S ribosomal protein L2 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 71/187 (37.97%), Postives = 99/187 (52.94%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VVK I +D  R A +A V +    K  +I     A +G+  GQ I +G +A + +GN LPLA++P GTV+ N+E K G  G L R +G    V+G   ++GK   V+L SG  ++I  T R  VG V    ++   + KAGR++ K        P  RG  MNP DHPHGGG
Sbjct:   62 YRLIDFKRNKDGVEAVVKTIEYDPNRTANIALVHYTDGVKAYII-----APKGLEVGQRIVSGPDADIKIGNALPLANIPVGTVVHNIELKPGKGGELVRAAGASAQVLG---QEGKYVLVRLQSGEVRMILGTCRATVGTVGNEQQSLVNIGKAGRSRWK-----GIRPTVRGSVMNPNDHPHGGG 235          
The following BLAST results are available for this feature:
BLAST of FC932539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_NANEQ1.204e-2534.5550S ribosomal protein L2P OS=Nanoarchaeum equitans... [more]
RL2_PICTO5.058e-2435.1650S ribosomal protein L2P OS=Picrophilus torridus ... [more]
RL2_STRSV4.282e-2339.0450S ribosomal protein L2 OS=Streptococcus sanguini... [more]
RL2_STRGC4.282e-2339.0450S ribosomal protein L2 OS=Streptococcus gordonii... [more]
RL2_JANSC7.304e-2330.2850S ribosomal protein L2 OS=Jannaschia sp. (strain... [more]
RL2_MYCAP9.539e-2332.5250S ribosomal protein L2 OS=Mycoplasma agalactiae ... [more]
RL2_STRU01.246e-2238.2250S ribosomal protein L2 OS=Streptococcus uberis (... [more]
RL2_OCEIH1.246e-2237.1750S ribosomal protein L2 OS=Oceanobacillus iheyens... [more]
RL2_LACS11.627e-2236.5150S ribosomal protein L2 OS=Lactobacillus salivari... [more]
RL2_STRS72.125e-2237.9750S ribosomal protein L2 OS=Streptococcus equi sub... [more]

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Properties
Property NameValue
Genbank descriptionC34209F10EF PostHarveN Citrus clementina cDNA clone C34209F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932539 ID=FC932539; Name=FC932539; organism=Citrus clementina; type=EST; length=699bp
GAACTCGTCAACGACAAGCCTATATCACTTCGAGACAGTCGCCATGGGTC
GTGTCATCCGCAACCAGAGGAAGGGTCGTGGCTCCATTTTCACGGCCAAC
ACCCGCCTGAACAAGGCCCCTGCCCAATTCCGGACCCTCGACTTCGCTGA
GGCTCACGGTTACACCCGTGGTGTCGTCAAGGAGATCATCCACGATGCCG
GCCGTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGCCACCCCTACAAGTTC
AAGATGATCACCGAGACTTTCATCGCCAACGAGGGCATGTACACCGGCCA
GTTCATCTACGCCGGTAAGAACGCTGCCCTGACCGTCGGCAACATTCTTC
CTCTCGCCTCCATGCCCGAGGGTACCGTCATCACCAACGTCGAGGAGAAG
GCTGGTGACCGTGGTGCGCTTGGCCGTACCTCCGGTAACTACGTTACTGT
TATTGGCCACAACCCCGAGGATGGCAAGACCCGTGTCAAGCTCCCCTCCG
GTGCCAAGAAGGTCATCAAGAACACCGCTCGCGGTATGGTTGGTATCGTT
GCCGGTGGTGGCCGTACCGACAAGCCTTTGCTCAAGGCTGGTCGTGCCAA
GCACAAGTTCGCCGTCAAGCGCAACTCTTGGCCCAAGACTCGTGGTGTTG
CCATGAACCCCGTCGATCACCCTCACGGTGGTGGNTACCACCAGCACAT
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