FC932540

Overview
NameFC932540
Unique NameFC932540
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932540_ssr205 microsatellite FC932540_ssr205:205..216. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12229 contig Ccv1_Contig12229:46..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932540 vs. ExPASy Swiss-Prot
Match: SERA_PIG (D-3-phosphoglycerate dehydrogenase OS=Sus scrofa GN=PHGDH PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.318e-18
Identity = 59/145 (40.69%), Postives = 78/145 (53.79%), Query Frame = 3
Query:  240 VLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVG*TLAVLG 671
            VLI++ L     ++L +    V    NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L G  L +LG
Sbjct:    9 VLISDSLDPCCREILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTSDVI-NAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMILCLARQIPQATASMKDGKWERKKFMGTELNGKVLGILG 152          
BLAST of FC932540 vs. ExPASy Swiss-Prot
Match: SERA_BOVIN (D-3-phosphoglycerate dehydrogenase OS=Bos taurus GN=PHGDH PE=2 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 3.834e-18
Identity = 52/119 (43.70%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  315 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVG*TLAVLG 671
            NLS EEL  ++  C+ LIVRS TKV  D+  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L G  L +LG
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTSDII-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQAAASMKDGKWERKKFMGTELNGKVLGILG 152          
BLAST of FC932540 vs. ExPASy Swiss-Prot
Match: SERA_SYNY3 (D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=serA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.539e-18
Identity = 47/144 (32.64%), Postives = 79/144 (54.86%), Query Frame = 3
Query:  240 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVG*TLAVLG 671
            VL+++ + Q G+D+L + A VD    LS  E+   +   DA+++RS TKV   + ++ + +LK++GRAGVG+DN+D+ AAT  G +                        R++  A+ SVK  KW+R +++G  +   TL V+G
Sbjct:   32 VLVSDSIDQVGIDILKQVAQVDVKTGLSEAEIIDIVPEYDAIMLRSATKVTEKIIQAGS-QLKIIGRAGVGVDNIDVPAATRQGIVVVNSPEGNTIAAAEHALAMMMALARHIPDANKSVKESKWERKQFIGTEVYKKTLGVVG 174          
BLAST of FC932540 vs. ExPASy Swiss-Prot
Match: SERA_MYCLE (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium leprae GN=serA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.994e-16
Identity = 52/146 (35.62%), Postives = 77/146 (52.74%), Query Frame = 3
Query:  234 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVG*TLAVLG 671
            P VLIA+KL Q+ +  L +   V         +L   +   DAL+VRS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G L                        R +A+ADAS++A  W+R+ + G  + G T+ V+G
Sbjct:    4 PVVLIADKLAQSTVAALGDQVEVRWVDGPDRTKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIAEADASLRAHIWKRSSFSGTEIFGKTVGVVG 148          
BLAST of FC932540 vs. ExPASy Swiss-Prot
Match: SERA_BACSU (D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis GN=serA PE=3 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 51/145 (35.17%), Postives = 76/145 (52.41%), Query Frame = 3
Query:  240 VLIAEKLGQAGLDLLNEFANVDCAY-NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVG*TLAVLG 671
            VL+++K+   GL  L E   ++    N++  E   ++   DAL+VRS TKV  D+F      LK+VGRAGVG+DN+D+  AT+ G +                        R++ QA+ SVK+ +W R  YVG  L G TL ++G
Sbjct:    4 VLVSDKMSNDGLQPLIESDFIEIVQKNVADAE--DELHTFDALLVRSATKVTEDLFNKMTS-LKIVGRAGVGVDNIDIDEATKHGVIVINAPNGNTISTAEHTFAMISSLMRHIPQANISVKSREWNRTAYVGSELYGKTLGIVG 145          
BLAST of FC932540 vs. ExPASy Swiss-Prot
Match: SERA_MYCTU (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium tuberculosis GN=serA PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14
Identity = 49/146 (33.56%), Postives = 74/146 (50.68%), Query Frame = 3
Query:  234 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVG*TLAVLG 671
            P VLIA+KL  + +  L +   V        ++L   +   DAL+VRS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G L                        R +  ADAS++   W+R+ + G  + G T+ V+G
Sbjct:    4 PVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVG 148          
BLAST of FC932540 vs. ExPASy Swiss-Prot
Match: SERA_MYCBO (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium bovis GN=serA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14
Identity = 49/146 (33.56%), Postives = 74/146 (50.68%), Query Frame = 3
Query:  234 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVG*TLAVLG 671
            P VLIA+KL  + +  L +   V        ++L   +   DAL+VRS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G L                        R +  ADAS++   W+R+ + G  + G T+ V+G
Sbjct:    4 PVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVG 148          
The following BLAST results are available for this feature:
BLAST of FC932540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SERA_PIG1.318e-1840.69D-3-phosphoglycerate dehydrogenase OS=Sus scrofa G... [more]
SERA_BOVIN3.834e-1843.70D-3-phosphoglycerate dehydrogenase OS=Bos taurus G... [more]
SERA_SYNY36.539e-1832.64D-3-phosphoglycerate dehydrogenase OS=Synechocysti... [more]
SERA_MYCLE7.994e-1635.62D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_BACSU3.038e-1535.17D-3-phosphoglycerate dehydrogenase OS=Bacillus sub... [more]
SERA_MYCTU3.358e-1433.56D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_MYCBO3.358e-1433.56D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]

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Properties
Property NameValue
Genbank descriptionC34209F11EF PostHarveN Citrus clementina cDNA clone C34209F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932540 ID=FC932540; Name=FC932540; organism=Citrus clementina; type=EST; length=673bp
GGCTCTCGCTCCACTGCACTCCCTCTCCCCATACGACGCCGCTTTAACCA
CCCCGAAAAATGGCCACGTCAGCAGCCTCCTGCGCTGCCTCCCTCCGTCA
GCCTTCCCTCAAGCTATCACTGTCTTCCAAACACTCTCTTTCCCCTCTAT
TCTCCGTCTCCTTCAACCACAAGCGGGCCCCGCCGCGGCTCGTAATAATC
GCATCCGCCGCCGCCGACGGCATCTCCTCAAAACCGACCGTTTTGATCGC
CGAGAAGCTCGGACAGGCCGGCTTGGATCTTCTCAACGAGTTCGCCAACG
TGGACTGCGCATACAACTTGTCGCCAGAGGAGCTCTGCACGAAGATCTCG
CTCTGCGACGCGCTGATCGTGCGCAGCGGCACAAAGGTCAATCGCGACGT
GTTCGAGTCGTCAGCTGGAAGGTTGAAGGTCGTTGGGAGAGCCGGTGTTG
GTATTGATAATGTGGATCTGGCTGCGGCTACTGAGTTTGGTTGCTTGGTT
GTGAACGCGCCGACGGCGAATACCGTTGCGGCTGCTGAGCATGGGATCGC
GCTTTTGGCTGCCATGGCTAGAAATGTCGCCCAGGCTGATGCCTCTGTTA
AGGCTGGAAAGTGGCAAAGGAACAAATATGTGGGTGTCTCCCTTGTGGGN
TAAACACTTGCTGTATTGGGATT
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