FC932542

Overview
NameFC932542
Unique NameFC932542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11876 contig Ccv1_Contig11876:74..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CYSP_TRYBB (Cysteine proteinase OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.201e-30
Identity = 77/165 (46.67%), Postives = 92/165 (55.76%), Query Frame = 2
Query:  194 EHHLSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYL-GLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            E   + FKKK+ K Y   +E   RF  F+ N+ +A  +   +P AT GVT FSD+T  EFR  Y  G        K   +   + T   PA  DWREKGAV PVK QG CGSCW+FST G +EG   +A   LVSLSEQ LV CD         + DSGCNGGLM
Sbjct:   38 EMRFAAFKKKYGKVYKDAKEEAFRFRAFEENMEQAKIQAAANPYATFGVTPFSDMTREEFRARYRNGASYFAAAQKRLRKTVNVTTGRAPAAVDWREKGAVTPVKVQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCD---------TIDSGCNGGLM 193          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.961e-30
Identity = 71/146 (48.63%), Postives = 89/146 (60.96%), Query Frame = 2
Query:  251 EHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND-LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            E DRRF IFK NLR      + + S   G+T+F+DLT  E+R  YLG + + +  +           D LP   DWR+KGAV  VKDQG CGSCW+FST GA+EG N + TG L++LSEQ+LVDCD         S + GCNGGLM
Sbjct:   68 EKDRRFEIFKDNLRFVDEHNEKNLSYRLGLTRFADLTNDEYRSKYLGAKMEKKGERRTSLRYEARVGDELPESIDWRKKGAVAEVKDQGGCGSCWAFSTIGAVEGINQIVTGDLITLSEQELVDCD--------TSYNEGCNGGLM 205          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: XCP2_ARATH (Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.328e-29
Identity = 73/175 (41.71%), Postives = 101/175 (57.71%), Query Frame = 2
Query:  179 DLLGAEHHLSLFKK---KFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKL-RLPKDADQAPIL--PTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            DL   +  + LF+     F KAY + EE   RF +FK NL+      K   S   G+ +F+DL+  EF++ YLGL+  + R  ++   A         +P   DWR+KGAV  VK+QGSCGSCW+FST  A+EG N + TG L +LSEQ+L+DCD         + ++GCNGGLM
Sbjct:   40 DLESHDKLIELFENWISNFEKAYETVEEKFLRFEVFKDNLKHIDETNKKGKSYWLGLNEFADLSHEEFKKMYLGLKTDIVRRDEERSYAEFAYRDVEAVPKSVDWRKKGAVAEVKNQGSCGSCWAFSTVAAVEGINKIVTGNLTTLSEQELIDCD--------TTYNNGCNGGLM 206          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.959e-29
Identity = 70/153 (45.75%), Postives = 97/153 (63.40%), Query Frame = 2
Query:  251 EHDRRFTIFKANLRRAARRQKLDPSATH--GVTQFSDLTPAEFRRTYLGLR----RKLRLPKDADQ--APILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            + D RF IFK NLR      + + +AT+  G+T F++LT  E+R  YLG R    R++   K+ +   +  +  +++P   DWR+KGAV  +KDQG+CGSCW+FST  A+EG N + TG+LVSLSEQ+LVDCD         S + GCNGGLM
Sbjct:   24 QQDERFNIFKDNLRFIDLHNENNKNATYKLGLTIFANLTNDEYRSLYLGARTEPVRRITKAKNVNMKYSAAVNVDEVPVTVDWRQKGAVNAIKDQGTCGSCWAFSTAAAVEGINKIVTGELVSLSEQELVDCDK--------SYNQGCNGGLM 168          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CRUST_PANBO (Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.959e-29
Identity = 76/164 (46.34%), Postives = 89/164 (54.27%), Query Frame = 2
Query:  212 FKKKFNKAYASQEEHDRRFTIFKANLR----RAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLR----LPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGG 679
            FK KF K YA+ EE   R ++F   L+       R  K + +    +  FSDLT  E   T  G+ R+      LPK A      PT  + AD DWR KGAV PVKDQG CGSCW+FS   ALEGA+FL TG LVSLSEQ LVDC            + GCNGG
Sbjct:   23 FKTKFGKKYANSEEESHRMSVFMDKLKFIQEHNERYDKGEVTYWLKINNFSDLTHEEVLATKTGMTRRRHPLSVLPKSA------PTTPMAADVDWRNKGAVTPVKDQGQCGSCWAFSAVAALEGAHFLKTGDLVSLSEQNLVDCSSSYG-------NQGCNGG 173          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.047e-29
Identity = 73/159 (45.91%), Postives = 94/159 (59.12%), Query Frame = 2
Query:  212 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDP-SATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDL-PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGL 682
            F   +N+ Y S+EE   R T+F  N+ RA + Q LD  +A +G+T+FSDLT  EF   YL     L+       +P    NDL P ++DWR+KGAV  VK+QG CGSCW+FS TG +EG  FL  G L+SLSEQ+L+DCD           D  C GGL
Sbjct:  168 FMTTYNRTYESREEAQWRLTVFARNMIRAQKIQALDRGTAQYGITKFSDLTEEEFHTIYLN--PLLQKESGRKMSPAKSINDLAPPEWDWRKKGAVTEVKNQGMCGSCWAFSVTGNVEGQWFLNRGTLLSLSEQELLDCD---------KVDKACLGGL 315          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 8.608e-29
Identity = 78/176 (44.32%), Postives = 95/176 (53.98%), Query Frame = 2
Query:  164 ESTNNDLLGAEHHLSLFKK---KFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGL 682
            E + + +LG   H+  F +   ++ K Y + EE   RF+IFK NL       K   S   GV QF+DLT  EF+RT LG  +             +    LP   DWRE G V PVKDQG CGSCW+FSTTGALE A   A GK +SLSEQQLVDC    +       + GCNGGL
Sbjct:   43 EESVSQILGQSRHVLSFARFTHRYGKKYQNVEEMKLRFSIFKENLDLIRSTNKKGLSYKLGVNQFADLTWQEFQRTKLGAAQNCSATLKGSHK--VTEAALPETKDWREDGIVSPVKDQGGCGSCWTFSTTGALEAAYHQAFGKGISLSEQQLVDCAGAFN-------NYGCNGGL 209          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CPR1_ARATH (Probable cysteine proteinase At3g19400 OS=Arabidopsis thaliana GN=At3g19400 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.918e-28
Identity = 72/156 (46.15%), Postives = 96/156 (61.54%), Query Frame = 2
Query:  230 KAYASQEEHDRRFTIFKANLRRAARRQKL-DPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAP--ILPTND-LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            K Y    E +RRF IFK NL+       + D +   G+T+F+DLT  EFR  YL  R+K+   KD+ +    +    D LP + DWR  GAV  VKDQG+CGSCW+FS  GA+EG N + TG+L+SLSEQ+LVDCD        G  ++GC+GG+M
Sbjct:   53 KNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRFADLTNEEFRAIYL--RKKMERTKDSVKTERYLYKEGDVLPDEVDWRANGAVVSVKDQGNCGSCWAFSAVGAVEGINQITTGELISLSEQELVDCDR-------GFVNAGCDGGIM 199          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.272e-28
Identity = 76/164 (46.34%), Postives = 96/164 (58.54%), Query Frame = 2
Query:  206 SLFKK---KFNKAYASQEEHDRRFTIFKANLRRAARRQKLDP-SATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDL-PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGL 682
            S+FK     +N+ Y S+EE   R ++F  N+ RA + Q LD  +A +GVT+FSDLT  EFR  YL    +        QA  +   DL P ++DWR KGAV  VKDQG CGSCW+FS TG +EG  FL  G L+SLSEQ+L+DCD           D  C GGL
Sbjct:  185 SIFKNFVITYNRTYESKEEARWRLSVFVNNMVRAQKIQALDRGTAQYGVTKFSDLTEEEFRTIYLNTLLRKEPGNKMKQAKSV--GDLAPPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD---------KMDKACMGGL 337          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.517e-28
Identity = 71/154 (46.10%), Postives = 95/154 (61.69%), Query Frame = 2
Query:  230 KAYASQEEHDRRFTIFKANLRRAARRQKLDPSATH--GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND-LPADFDWREKGAVGP-VKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGG 679
            K Y    E +RRF IFK NL+R       DP+ ++  G+ +FSDLT  EF+ +YLG + + +   D  +       D LP + DWRE+GAV P VK QG CGSCW+F+ TGA+EG N + TG+LVSLSEQ+L+DCD        G+ + GC GG
Sbjct:   50 KNYNGLGEKERRFKIFKDNLKRIEEHNS-DPNRSYERGLNKFSDLTADEFQASYLGGKMEKKSLSDVAERYQYKEGDVLPDEVDWRERGAVVPRVKRQGECGSCWAFAATGAVEGINQITTGELVSLSEQELIDCDR-------GNDNFGCAGG 195          
The following BLAST results are available for this feature:
BLAST of FC932542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
CYSP_TRYBB1.201e-3046.67Cysteine proteinase OS=Trypanosoma brucei brucei P... [more]
RD21A_ARATH5.961e-3048.63Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
XCP2_ARATH1.328e-2941.71Xylem cysteine proteinase 2 OS=Arabidopsis thalian... [more]
CYSP4_BRANA2.959e-2945.75Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
CRUST_PANBO2.959e-2946.34Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1[more]
CATF_MOUSE5.047e-2945.91Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]
ALEU_ARATH8.608e-2944.32Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
CPR1_ARATH1.918e-2846.15Probable cysteine proteinase At3g19400 OS=Arabidop... [more]
CATF_HUMAN4.272e-2846.34Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
CPR2_ARATH9.517e-2846.10Probable cysteine proteinase At3g43960 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC34209G01EF PostHarveN Citrus clementina cDNA clone C34209G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932542 ID=FC932542; Name=FC932542; organism=Citrus clementina; type=EST; length=685bp
GATTGATATCAGCATTGTCTAAAACATGGGATCTAAAACAGTAGTTTTCT
TTCTGGTCTCTCTCGTCGTCGTCTCCGCCGTTTCATCAGGGACGTTGATC
GACGATGTTGATCAGCTGATCAGTCAAGTAACGGACTGCGGTGACGAGAT
CCTAAGCCACCACGAGAGCACCAACAACGACCTCTTGGGCGCAGAGCACC
ACCTCTCCCTATTCAAGAAGAAGTTCAATAAAGCGTACGCTTCGCAGGAG
GAGCACGACCGTAGGTTCACTATTTTCAAGGCCAACTTGCGACGCGCCGC
GCGTCGCCAGAAGCTCGACCCGAGCGCCACCCACGGCGTCACTCAGTTCT
CCGACTTGACTCCGGCCGAGTTCCGCCGGACGTACCTTGGCCTCAGGAGG
AAGCTGAGGCTGCCTAAGGATGCGGATCAGGCGCCGATCTTGCCTACGAA
TGATTTGCCGGCGGATTTTGATTGGAGAGAGAAGGGCGCTGTAGGCCCTG
TTAAAGATCAGGGTTCATGCGGATCATGCTGGAGTTTCAGTACAACAGGG
GCCTTGGAAGGTGCTAACTTCCTGGCAACTGGAAAGCTTGTGAGCCTCAG
TGAGCAACAGCTTGTGGATTGCGATCATGAGTGTGATCCTGAGGAACCAG
GTTCTTGTGATTCTGGATGCAATGGTGGGCTTATG
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