FC932542

Overview
NameFC932542
Unique NameFC932542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.163e-25
Identity = 73/181 (40.33%), Postives = 96/181 (53.04%), Query Frame = 2
Query:  170 TNNDLLGAEHHLSLFKK--KFNKAYASQEEHDRRFTIFKANLRRAAR-RQKLDPSATHGVTQFSDLTPAEFRRTYLGL-----RRKLRLPKDADQAPILPTNDLPA-DFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            T  DL   +   +L++K    +      +E +RRF +FK N++      QK D      + +F D+T  EFR  Y G      R +  + K+           LPA   DWR KGAV  VKDQG CGSCW+FST  ++EG N + TG+LVSLSEQ+LVDCD         S + GCNGGLM
Sbjct:   26 TEKDLASEDSLWNLYEKWRTHHTVARDLDEKNRRFNVFKENVKFIHEFNQKKDAPYKLALNKFGDMTNQEFRSKYAGSKIQHHRSQRGIQKNTGSFMYENVGSLPAASIDWRAKGAVTGVKDQGQCGSCWAFSTIASVEGINQIKTGELVSLSEQELVDCD--------TSYNEGCNGGLM 198          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CYSP7_DICDI (Cysteine proteinase 7 OS=Dictyostelium discoideum GN=cprG PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.163e-25
Identity = 67/158 (42.41%), Postives = 88/158 (55.70%), Query Frame = 2
Query:  227 NKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTN---DLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGK--LVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            ++ + S EE + R+ IFKAN+               G+  F+D++  E+R TYLG       P DA    +  ++   D  A  DWR +GAV P+K+QG CG CWSFSTTGA EGA +LA GK  LVSLSEQ L+DC            ++GC GGLM
Sbjct:   37 HQRHYSSEEFNGRYNIFKANMDYVNEWNTKGSETVLGLNVFADISNEEYRATYLGT------PFDASSLEMTESDKIFDASAQVDWRTQGAVTPIKNQGQCGGCWSFSTTGATEGAQYLANGKKNLVSLSEQNLIDCSGSYG-------NNGCEGGLM 181          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: LMCPA_LEIME (Cysteine proteinase A OS=Leishmania mexicana GN=LMCPA PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.519e-25
Identity = 70/170 (41.18%), Postives = 89/170 (52.35%), Query Frame = 2
Query:  191 AEHHLSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVT-QFSDLTPAEFRRTYLG----LRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            A  H   FKK+  KA+    E   RF  FK N++ A      +P A + V+ +F+DLTP EF + YL      R      +D       P+  +  D  WR+KGAV PVK+QG CGSCW+FS  G +EG    +   LVSLSEQ LV CD         + D GCNGGLM
Sbjct:   38 ASAHYGSFKKRHGKAFGGDAEEGHRFNAFKQNMQTAYFLNTQNPHAHYDVSGKFADLTPQEFAKLYLNPDYYARHLKNHKEDVHVDDSAPSGVMSVD--WRDKGAVTPVKNQGLCGSCWAFSAIGNIEGQWAASGHSLVSLSEQMLVSCD---------NIDEGCNGGLM 196          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CYSP1_HOMAM (Digestive cysteine proteinase 1 OS=Homarus americanus GN=LCP1 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.519e-25
Identity = 72/163 (44.17%), Postives = 90/163 (55.21%), Query Frame = 2
Query:  212 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKL----DPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLP--ADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGS-CDSGCNGG 679
            FK KF + Y   EE   R  +F  NL+      K     + +    + QFSD+T  +F     G ++    P+ A  A    T+  P   + DWR KGAV PVKDQG CGSCW+FSTTG +EG +FL TG+LVSLSEQQLVDC         GS  + GCNGG
Sbjct:   23 FKGKFGRKYVDLEEERYRLNVFLDNLQYIEEFNKKYERGEVTYNLAINQFSDMTNEKFNAVMKGYKKG---PRPA--AVFTSTDAAPESTEVDWRTKGAVTPVKDQGQCGSCWAFSTTGGIEGQHFLKTGRLVSLSEQQLVDC-------AGGSYYNQGCNGG 173          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CYSP2_HOMAM (Digestive cysteine proteinase 2 OS=Homarus americanus GN=LCP2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.592e-25
Identity = 67/162 (41.36%), Postives = 84/162 (51.85%), Query Frame = 2
Query:  212 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKL----DPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            FK K+ + Y   EE   R  IF+ N +      K     + +    + +F D+T  EF     G   +   P      P   T     + DWR KGAV PVKDQG CGSCW+FSTTG+LEG +FL TG L+SL+EQQLVDC     P+       GCNGG M
Sbjct:   23 FKGKYGRQYVDAEEDSYRRVIFEQNQKYIEEFNKKYENGEVTFNLAMNKFGDMTLEEFNAVMKGNIPRRSAPVSVFY-PKKETGPQATEVDWRTKGAVTPVKDQGQCGSCWAFSTTGSLEGQHFLKTGSLISLAEQQLVDCSRPYGPQ-------GCNGGWM 176          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CATL1_CANFA (Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.592e-25
Identity = 67/162 (41.36%), Postives = 85/162 (52.47%), Query Frame = 2
Query:  212 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQ----FSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            +K    + Y   EE  RR  +++ N++      +      HG T     F D+T  EFR+   G + +        Q P+    ++P   DWREKG V PVK+QG CGSCW+FS TGALEG  F  TGKLVSLSEQ LVDC            + GCNGGLM
Sbjct:   32 WKATHRRLYGMNEEGWRR-AVWEKNMKMIELHNREYSQGKHGFTMAMNAFGDMTNEEFRQVMNGFQNQKHKKGKMFQEPLFA--EIPKSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSR-------AQGNEGCNGGLM 183          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 74/183 (40.44%), Postives = 92/183 (50.27%), Query Frame = 2
Query:  143 DEILSHHESTNNDLLGAEHHLSLFKK---KFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGL 682
            D   S  ES     LG   H   F +   ++ K+Y S  E  RRF IF  +L       +       G+ +FSD++  EF+ T LG  +        +   +     LP   DWRE G V PVK+Q  CGSCW+FSTTGALE A   ATGK +SLSEQQLVDC         G  + GCNGGL
Sbjct:   38 DRAASTLESAVLGALGRTRHALRFARFAVRYGKSYESAAEVRRRFRIFSESLEEVRSTNRKGLPYRLGINRFSDMSWEEFQATRLGAAQTCSATLAGNHL-MRDAAALPETKDWREDGIVSPVKNQAHCGSCWTFSTTGALEAAYTQATGKNISLSEQQLVDC-------AGGFNNFGCNGGL 212          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CATV_NPVCD (Viral cathepsin OS=Choristoneura fumiferana defective polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.421e-25
Identity = 65/170 (38.24%), Postives = 92/170 (54.12%), Query Frame = 2
Query:  179 DLLGAEHHLSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPI-LPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            DLL A  +   F   FNK Y+S+ E   RF IF+ NL     +   D SA + + +FSDL+  E    Y GL   L+     +   +  P +  P +FDWR    V  VK+QG+CG+CW+F+T G+LE    +   +L++LSEQQL+DCD           D GC+GGL+
Sbjct:   20 DLLKAPSYFEDFLHNFNKNYSSKSEKLHRFKIFQHNLEEIINKNLNDTSAQYEINKFSDLSKDETISKYTGLSLPLQNQNFCEVVVLNRPPDKGPLEFDWRRLNKVTSVKNQGTCGACWAFATLGSLESQFAIKHDQLINLSEQQLIDCDF---------VDMGCDGGLL 180          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.774e-25
Identity = 67/149 (44.97%), Postives = 86/149 (57.72%), Query Frame = 2
Query:  251 EHDRRFTIFKANLRRA-ARRQKLDPSATH--GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAV-GPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            EH+RRF +F  NL+   A   + D       G+ +F+DLT  EFR TYLG     R  +  +         LP   DWR+KGAV  PVK+QG CGSCW+FS   A+EG N + TG+LVSLSEQ+LV+C            +SGCNGG+M
Sbjct:   84 EHERRFRVFWDNLKFVDAHNARADERGGFRLGMNRFADLTNGEFRATYLGTTPAGRGRRVGEAYRHDGVEALPDSVDWRDKGAVVAPVKNQGQCGSCWAFSAVAAVEGINKIVTGELVSLSEQELVECAR-------NGQNSGCNGGIM 225          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CYSP3_DICDI (Cysteine proteinase 3 OS=Dictyostelium discoideum GN=cprC PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.541e-25
Identity = 67/157 (42.68%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  227 NKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRL----PKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            NKAY + +E   R+  FK N+               G+ Q +DL+  E+R  YLG R  ++L     ++       P    P + DWREK AV PVKDQG CGSC+SFSTTG++EG   + TGKLVSLSEQ ++DC      E       GCNGGLM
Sbjct:   42 NKAY-THKEFMPRYEEFKKNMDYVHNWNSKGSKTVLGLNQHADLSNEEYRLNYLGTRAHIKLNGYHKRNLGLRLNRPQFKQPLNVDWREKDAVTPVKDQGQCGSCYSFSTTGSVEGVTAIKTGKLVSLSEQNILDCSSSFGNE-------GCNGGLM 190          
The following BLAST results are available for this feature:
BLAST of FC932542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
CYSP_HEMSP1.163e-2540.33Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]
CYSP7_DICDI1.163e-2542.41Cysteine proteinase 7 OS=Dictyostelium discoideum ... [more]
LMCPA_LEIME1.519e-2541.18Cysteine proteinase A OS=Leishmania mexicana GN=LM... [more]
CYSP1_HOMAM1.519e-2544.17Digestive cysteine proteinase 1 OS=Homarus america... [more]
CYSP2_HOMAM2.592e-2541.36Digestive cysteine proteinase 2 OS=Homarus america... [more]
CATL1_CANFA2.592e-2541.36Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=... [more]
ALEU_HORVU3.385e-2540.44Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
CATV_NPVCD4.421e-2538.24Viral cathepsin OS=Choristoneura fumiferana defect... [more]
CYSP1_ORYSJ5.774e-2544.97Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
CYSP3_DICDI7.541e-2542.68Cysteine proteinase 3 OS=Dictyostelium discoideum ... [more]

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Properties
Property NameValue
Genbank descriptionC34209G01EF PostHarveN Citrus clementina cDNA clone C34209G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932542 ID=FC932542; Name=FC932542; organism=Citrus clementina; type=EST; length=685bp
GATTGATATCAGCATTGTCTAAAACATGGGATCTAAAACAGTAGTTTTCT
TTCTGGTCTCTCTCGTCGTCGTCTCCGCCGTTTCATCAGGGACGTTGATC
GACGATGTTGATCAGCTGATCAGTCAAGTAACGGACTGCGGTGACGAGAT
CCTAAGCCACCACGAGAGCACCAACAACGACCTCTTGGGCGCAGAGCACC
ACCTCTCCCTATTCAAGAAGAAGTTCAATAAAGCGTACGCTTCGCAGGAG
GAGCACGACCGTAGGTTCACTATTTTCAAGGCCAACTTGCGACGCGCCGC
GCGTCGCCAGAAGCTCGACCCGAGCGCCACCCACGGCGTCACTCAGTTCT
CCGACTTGACTCCGGCCGAGTTCCGCCGGACGTACCTTGGCCTCAGGAGG
AAGCTGAGGCTGCCTAAGGATGCGGATCAGGCGCCGATCTTGCCTACGAA
TGATTTGCCGGCGGATTTTGATTGGAGAGAGAAGGGCGCTGTAGGCCCTG
TTAAAGATCAGGGTTCATGCGGATCATGCTGGAGTTTCAGTACAACAGGG
GCCTTGGAAGGTGCTAACTTCCTGGCAACTGGAAAGCTTGTGAGCCTCAG
TGAGCAACAGCTTGTGGATTGCGATCATGAGTGTGATCCTGAGGAACCAG
GTTCTTGTGATTCTGGATGCAATGGTGGGCTTATG
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