FC932542

Overview
NameFC932542
Unique NameFC932542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.743e-24
Identity = 69/157 (43.95%), Postives = 84/157 (53.50%), Query Frame = 2
Query:  212 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGL 682
            F  +  K Y S EE  +RF IF  NL+      +   S   G+ +F+DLT  EFR+  LG  +        +    L    LP   DWR+ G V PVK QG CGSCW+FSTTGALE A   A GK +SLSEQQLVDC    +       + GCNGGL
Sbjct:   60 FAIRHRKRYDSVEEIKQRFEIFLDNLKMIRSHNRKGLSYKLGINEFTDLTWDEFRKHKLGASQNCSATTKGNLK--LTNVVLPETKDWRKDGIVSPVKAQGKCGSCWTFSTTGALEAAYAQAFGKGISLSEQQLVDCAGAFN-------NFGCNGGL 207          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CATV_NPVAH (Viral cathepsin OS=Adoxophyes honmai nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 64/179 (35.75%), Postives = 91/179 (50.84%), Query Frame = 2
Query:  179 DLLGAEHHLSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKL--RLPKDADQ--------APILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            D+  A+H+   F   +NK Y   +  + RF IFK NL     + KL+ SA + + +FSDL+  E    Y GL  K    + +            AP    ++LP +FDWR    +  VKDQG+CGSCW+ +  G LE    +    L++LSEQQL+DCD         S +  C+GGLM
Sbjct:   24 DIHDAQHYFETFIINYNKQYPDTKTKNYRFKIFKQNLEDINEKNKLNDSAIYNINKFSDLSKNELLTKYTGLTSKKPSNMVRSTSNFCNVIHLDAPPDVHDELPQNFDWRVNNKMTSVKDQGACGSCWAHAAVGTLETLYAIKHNYLINLSEQQLIDCD---------SANMACDGGLM 193          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CATL1_HUMAN (Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 66/162 (40.74%), Postives = 86/162 (53.09%), Query Frame = 2
Query:  212 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQ----FSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            +K   N+ Y   EE  RR  +++ N++      +      H  T     F D+T  EFR+   G + +        Q P+    + P   DWREKG V PVK+QG CGSCW+FS TGALEG  F  TG+L+SLSEQ LVDC     P+     + GCNGGLM
Sbjct:   32 WKAMHNRLYGMNEEGWRR-AVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLF--YEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---GPQG----NEGCNGGLM 183          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CATV_NPVRO (Viral cathepsin OS=Rachiplusia ou multiple nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.384e-24
Identity = 64/170 (37.65%), Postives = 92/170 (54.12%), Query Frame = 2
Query:  179 DLLGAEHHLSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPI-LPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            DLL A ++   F  +FNK Y S+ E  RRF IF+ NL     + + D SA + + +FSDL+  E    Y GL   ++         +  P    P +FDWR    V  VK+QG CG+CW+F+T  +LE    +   +L++LSEQQ++DCD           D+GCNGGL+
Sbjct:   20 DLLKAPNYFEEFVHRFNKDYGSEVEKLRRFKIFQHNLNEIIIKNQND-SAKYEINKFSDLSKDETIAKYTGLSLPIQTQNFCKVIVLDQPPGKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLASLESQFAIKHNQLINLSEQQMIDCDF---------VDAGCNGGLL 179          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CATV_NPVBM (Viral cathepsin OS=Bombyx mori nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.384e-24
Identity = 65/175 (37.14%), Postives = 94/175 (53.71%), Query Frame = 2
Query:  164 ESTNNDLLGAEHHLSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPI-LPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            +S   D L A ++   F  +FNK Y+S+ E  RRF IF+ NL     + + D SA + + +FSDL+  E    Y GL    +         +  P    P +FDWR    V  VK+QG CG+CW+F+T G+LE    +   +L++LSEQQ++DCD           D+GCNGGL+
Sbjct:   15 KSAAYDPLKAPNYFEEFVHRFNKNYSSEVEKLRRFKIFQHNLNEIINKNQND-SAKYEINKFSDLSKDETIAKYTGLSLPTQTQNFCKVILLDQPPGKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHNELINLSEQQMIDCDF---------VDAGCNGGLL 179          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CATS_RAT (Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.384e-24
Identity = 71/171 (41.52%), Postives = 90/171 (52.63%), Query Frame = 2
Query:  194 EHHLSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATH----GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND---LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            +HH  L+KK   +    Q E D R  I++ NL+             H    G+    D+TP E     +G    LR+P+  +++  L ++    LP   DWREKG V  VK QGSCGSCW+FS  GALEG   L TGKLVSLS Q LVDC  E   E+ G  + GC GG M
Sbjct:   23 DHHWDLWKKTRMRRNTDQNEEDVRRLIWEKNLKFIMLHNLEHSMGMHSYSVGMNHMGDMTPEEV----IGYMGSLRIPRPWNRSGTLKSSSNQTLPDSVDWREKGCVTNVKYQGSCGSCWAFSAEGALEGQLKLKTGKLVSLSAQNLVDCSTE---EKYG--NKGCGGGFM 184          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CATV_NPVLD (Viral cathepsin OS=Lymantria dispar multicapsid nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24
Identity = 64/178 (35.96%), Postives = 96/178 (53.93%), Query Frame = 2
Query:  164 ESTNNDLLGAEHHLSLFKKKFNKAYASQEEHDRRFTIFKANLRR--AARRQKLD-PSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPI-LPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            E    +L  A  +   F + +NK Y S  E ++R++IFK NL    A      D P+AT+ + +FSDL+ +E    + GL    R+        +  P +  P  FDWRE+  V  +K+QG+CG+CW+F+T  ++E    +   +L+ LSEQQL+DCD         S D GCNGGL+
Sbjct:   43 EGAAYNLQRAPDYFESFVENYNKNYTSDWEKNKRYSIFKDNLHEINAKNGNATDGPTATYKINKFSDLSKSELIAKFTGLSIPERVSNFCKTIILNQPPDKGPLHFDWREQNKVTSIKNQGACGACWAFATLASVESQFAMRHNRLIDLSEQQLIDCD---------SVDMGCNGGLL 211          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24
Identity = 63/165 (38.18%), Postives = 94/165 (56.97%), Query Frame = 2
Query:  200 HLSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAP---ILPTNDLPADFDWREKG-AVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGL 682
            H + + K+  K Y+S+E +  R  +F  N R+     + + +   G+ QFSD++ AE +  YL        P++        +  T   P+  DWR+KG  V PVK+QG+CGSCW+FSTTGALE A  +A+GK+++L+EQQLVDC    +       + GC GGL
Sbjct:   32 HFTSWMKQHQKTYSSRE-YSHRLQVFANNWRKIQAHNQRNHTFKMGLNQFSDMSFAEIKHKYLWSE-----PQNCSATKSNYLRGTGPYPSSMDWRKKGNVVSPVKNQGACGSCWTFSTTGALESAVAIASGKMMTLAEQQLVDCAQNFN-------NHGCQGGL 183          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CPR3_ARATH (Probable cysteine proteinase At4g11310 OS=Arabidopsis thaliana GN=At4g11310 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.089e-23
Identity = 64/157 (40.76%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  221 KFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLR----RKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGG 679
            K  K Y S  E +RR TIF+ NLR    R   + S   G+T F+DL+  E++    G      R       +D+      + LP   DWR +GAV  VKDQG C SCW+FST GA+EG N + TG+LV+LSEQ L++C+ E         ++GC GG
Sbjct:   55 KHGKVYGSVAEKERRLTIFEDNLRFINNRNAENLSYRLGLTGFADLSLHEYKEVCHGADPRPPRNHVFMTSSDRYKTSADDVLPKSVDWRNEGAVTEVKDQGHCRSCWAFSTVGAVEGLNKIVTGELVTLSEQDLINCNKE---------NNGCGGG 202          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CATV_NPVEP (Viral cathepsin OS=Epiphyas postvittana nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.857e-23
Identity = 61/170 (35.88%), Postives = 93/170 (54.71%), Query Frame = 2
Query:  179 DLLGAEHHLSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPI-LPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            D+L A ++   F +++NK Y S+ E  RR+ IF+ NL     + + D +A + + +FSDL+  E    Y GL   L      +   +  P    P +FDWR    +  VK+QG CG+CW+F+T  +LE    +A  +L++LSEQQ++DCD         S D GC GGL+
Sbjct:   20 DILKAPNYFEEFVRQYNKQYDSEYEKLRRYKIFQHNLNDIITKNRND-TAVYKINKFSDLSKDETIAKYTGLSLPLHTQNFCEVVVLDRPPGKGPLEFDWRRFNKITSVKNQGMCGACWAFATLASLESQFAIAHDRLINLSEQQMIDCD---------SVDVGCEGGLL 179          
The following BLAST results are available for this feature:
BLAST of FC932542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
CYSP3_SOLLC3.743e-2443.95Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
CATV_NPVAH4.888e-2435.75Viral cathepsin OS=Adoxophyes honmai nucleopolyhed... [more]
CATL1_HUMAN4.888e-2440.74Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2[more]
CATV_NPVRO6.384e-2437.65Viral cathepsin OS=Rachiplusia ou multiple nucleop... [more]
CATV_NPVBM6.384e-2437.14Viral cathepsin OS=Bombyx mori nuclear polyhedrosi... [more]
CATS_RAT6.384e-2441.52Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1[more]
CATV_NPVLD8.338e-2435.96Viral cathepsin OS=Lymantria dispar multicapsid nu... [more]
CATH_RAT8.338e-2438.18Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
CPR3_ARATH1.089e-2340.76Probable cysteine proteinase At4g11310 OS=Arabidop... [more]
CATV_NPVEP1.857e-2335.88Viral cathepsin OS=Epiphyas postvittana nucleopoly... [more]

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Properties
Property NameValue
Genbank descriptionC34209G01EF PostHarveN Citrus clementina cDNA clone C34209G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932542 ID=FC932542; Name=FC932542; organism=Citrus clementina; type=EST; length=685bp
GATTGATATCAGCATTGTCTAAAACATGGGATCTAAAACAGTAGTTTTCT
TTCTGGTCTCTCTCGTCGTCGTCTCCGCCGTTTCATCAGGGACGTTGATC
GACGATGTTGATCAGCTGATCAGTCAAGTAACGGACTGCGGTGACGAGAT
CCTAAGCCACCACGAGAGCACCAACAACGACCTCTTGGGCGCAGAGCACC
ACCTCTCCCTATTCAAGAAGAAGTTCAATAAAGCGTACGCTTCGCAGGAG
GAGCACGACCGTAGGTTCACTATTTTCAAGGCCAACTTGCGACGCGCCGC
GCGTCGCCAGAAGCTCGACCCGAGCGCCACCCACGGCGTCACTCAGTTCT
CCGACTTGACTCCGGCCGAGTTCCGCCGGACGTACCTTGGCCTCAGGAGG
AAGCTGAGGCTGCCTAAGGATGCGGATCAGGCGCCGATCTTGCCTACGAA
TGATTTGCCGGCGGATTTTGATTGGAGAGAGAAGGGCGCTGTAGGCCCTG
TTAAAGATCAGGGTTCATGCGGATCATGCTGGAGTTTCAGTACAACAGGG
GCCTTGGAAGGTGCTAACTTCCTGGCAACTGGAAAGCTTGTGAGCCTCAG
TGAGCAACAGCTTGTGGATTGCGATCATGAGTGTGATCCTGAGGAACCAG
GTTCTTGTGATTCTGGATGCAATGGTGGGCTTATG
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