FC932542

Overview
NameFC932542
Unique NameFC932542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CATS_SAIBB (Cathepsin S OS=Saimiri boliviensis boliviensis GN=CTSS PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.404e-23
Identity = 71/198 (35.86%), Postives = 92/198 (46.46%), Query Frame = 2
Query:  113 QLISQVTDCGDEILSHHESTNNDLLGAEHHLSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATH----GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND---LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            QL+  +  C   +   H+    D     HH +L+KK + K Y  + E   R  I++ NL+             H    G+    D+T  E     + L   LR+P    +     +N    LP   DWREKG V  VK QGSCG+CW+FS  GALE    L TGKLVSLS Q LVDC  +         + GCNGG M
Sbjct:    3 QLVCVLFVCSSAVTQLHKDPTLD-----HHWNLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEV----MSLMSSLRVPNQWQRNITYKSNPNQMLPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSEKYG-------NKGCNGGFM 184          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CATL1_PIG (Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.218e-23
Identity = 66/163 (40.49%), Postives = 88/163 (53.99%), Query Frame = 2
Query:  212 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQ----FSDLTPAEFRRTYLGLR-RKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            +K    + Y   EE  RR  +++ N++      +      HG +     F D+T  EFR+   G + +K +  K   ++ +L   ++P   DWREKG V  VK+QG CGSCW+FS TGALEG  F  TGKLVSLSEQ LVDC            + GCNGGLM
Sbjct:   32 WKATHGRLYGMNEEGWRR-AVWEKNMKMIELHNQEYSQGKHGFSMAMNAFGDMTNEEFRQVMNGFQNQKHKKGKVFHESLVL---EVPKSVDWREKGYVTAVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRP-------QGNQGCNGGLM 183          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CATV_NPVHZ (Viral cathepsin OS=Heliothis zea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.204e-22
Identity = 64/180 (35.56%), Postives = 89/180 (49.44%), Query Frame = 2
Query:  191 AEHHLSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQK------------LDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPIL---PTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            +E +   F +++NK+Y   +E+  R+ +FK NL +   + +            L  SA  GV +FSD TP E   +  G    L       +  I+   P   LP  +DWR+   V P+KDQG CGSCW+F   G +E    +   KL+ LSEQQL+DCD           D GCNGGLM
Sbjct:   53 SEIYFKHFLQQYNKSYDDPKEYQYRYNVFKDNLNKINSQNRENLLNNKNNNDSLSTSAQFGVNKFSDKTPDEVLHSNTGFFLNLSQHYTLCENRIVKGAPDIRLPDYYDWRDTNKVTPIKDQGVCGSCWAFVAIGNIESQYAIRHNKLIDLSEQQLLDCD---------EVDLGCNGGLM 223          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CATS_CANFA (Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.204e-22
Identity = 68/171 (39.77%), Postives = 87/171 (50.88%), Query Frame = 2
Query:  194 EHHLSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATH----GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND---LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            +HH +L+KK ++K Y  + E   R  I++ NL+             H    G+    D+T  E     + L   LR+P    +     +N    LP   DWREKG V  VK QGSCG+CW+FS  GALE    L TGKLVSLS Q LVD    C  E+ G  + GCNGG M
Sbjct:   25 DHHWNLWKKTYSKQYKEENEEVARRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTGEEV----ISLMGSLRVPSQWQRNVTYRSNSNQKLPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----CSTEKYG--NKGCNGGFM 185          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.204e-22
Identity = 66/165 (40.00%), Postives = 89/165 (53.94%), Query Frame = 2
Query:  200 HLSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAP---ILPTNDLPADFDWREKGA-VGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGL 682
            H   +  +  K Y S EE+  R  +F +N R+       + +   G+ QFSD++  E R  YL        P++        +  T   P   DWR+KG  V PVK+QGSCGSCW+FSTTGALE A  +ATGK++SL+EQQLVDC    +       + GC GGL
Sbjct:   34 HFKSWMVQHQKKY-SLEEYHHRLQVFVSNWRKINAHNAGNHTFKLGLNQFSDMSFDEIRHKYLWSE-----PQNCSATKGNYLRGTGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFN-------NHGCQGGL 185          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CATS_BOVIN (Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.572e-22
Identity = 65/168 (38.69%), Postives = 80/168 (47.62%), Query Frame = 2
Query:  194 EHHLSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATH----GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            +HH  L+KK + K Y  + E   R  I++ NL+             H    G+    D+T  E       LR   + P++       P   LP   DWREKG V  VK QG+CGSCW+FS  GALE    L TGKLVSLS Q LVDC            + GCNGG M
Sbjct:   25 DHHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVTLHNLEHSMGMHSYELGMNHLGDMTSEEVISLMSSLRVPSQWPRNVTYKSD-PNQKLPDSMDWREKGCVTEVKYQGACGSCWAFSAVGALEAQVKLKTGKLVSLSAQNLVDC------STAKYGNKGCNGGFM 185          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 72/198 (36.36%), Postives = 93/198 (46.97%), Query Frame = 2
Query:  113 QLISQVTDCGDEILSHHESTNNDLLGAEHHLSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATH----GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND---LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            +L+  +  C   +   H+    D     HH  L+KK + K Y  + E   R  I++ NL+             H    G+    D+T  E     + L   LR+P    +     +N    LP   DWREKG V  VK QGSCG+CW+FS  GALE    L TGKLVSLS Q LVD    C  E+ G  + GCNGG M
Sbjct:    3 RLVCVLLVCSSAVAQLHKDPTLD-----HHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEV----MSLMSSLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----CSTEKYG--NKGCNGGFM 185          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 67/165 (40.61%), Postives = 88/165 (53.33%), Query Frame = 2
Query:  200 HLSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAP---ILPTNDLPADFDWREKGA-VGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGL 682
            H   +  +  K Y+S EE+  R   F +NLR        + +   G+ QFSD++  E +R YL        P++        +  T   P   DWR+KG  V PVK+QGSCGSCW+FSTTGALE A  +ATGKL  L+EQQLVDC    +       + GC GGL
Sbjct:   34 HFQSWMVQHQKKYSS-EEYYHRLQAFASNLREINAHNARNHTFKMGLNQFSDMSFDELKRKYLWSE-----PQNCSATKSNYLRGTGPYPPSMDWRKKGNFVTPVKNQGSCGSCWTFSTTGALESAVAIATGKLPFLAEQQLVDCAQNFN-------NHGCQGGL 185          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CPR4_ARATH (Probable cysteine proteinase At4g11320 OS=Arabidopsis thaliana GN=At4g11320 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22
Identity = 65/157 (41.40%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  221 KFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLR-RKLRLPKDADQAPILPTND---LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGG 679
            K  K Y S  E +RR TIF+ NLR    R   + S   G+ +F+DL+  E+     G   R  R       +    T+D   LP   DWR +GAV  VKDQG C SCW+FST GA+EG N + TG+LV+LSEQ L++C+ E         ++GC GG
Sbjct:   62 KHGKVYDSVAEKERRLTIFEDNLRFITNRNAENLSYRLGLNRFADLSLHEYGEICHGADPRPPRNHVFMTSSNRYKTSDGDVLPKSVDWRNEGAVTEVKDQGLCRSCWAFSTVGAVEGLNKIVTGELVTLSEQDLINCNKE---------NNGCGGG 209          
BLAST of FC932542 vs. ExPASy Swiss-Prot
Match: CATL2_HUMAN (Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22
Identity = 68/163 (41.72%), Postives = 84/163 (51.53%), Query Frame = 2
Query:  212 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQ----FSDLTPAEFRRTYLGLR-RKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 685
            +K    + Y + EE  RR  +++ N++             HG T     F D+T  EFR+     R +K R  K   +   L   DLP   DWR+KG V PVK+Q  CGSCW+FS TGALEG  F  TGKLVSLSEQ LVDC            + GCNGG M
Sbjct:   32 WKATHRRLYGANEEGWRR-AVWEKNMKMIELHNGEYSQGKHGFTMAMNAFGDMTNEEFRQMMGCFRNQKFRKGKVFREPLFL---DLPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRP-------QGNQGCNGGFM 183          
The following BLAST results are available for this feature:
BLAST of FC932542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
CATS_SAIBB5.404e-2335.86Cathepsin S OS=Saimiri boliviensis boliviensis GN=... [more]
CATL1_PIG9.218e-2340.49Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1[more]
CATV_NPVHZ1.204e-2235.56Viral cathepsin OS=Heliothis zea nuclear polyhedro... [more]
CATS_CANFA1.204e-2239.77Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1[more]
CATH_PIG1.204e-2240.00Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
CATS_BOVIN1.572e-2238.69Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2[more]
CATS_HUMAN2.054e-2236.36Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
CATH_BOVIN2.054e-2240.61Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]
CPR4_ARATH3.503e-2241.40Probable cysteine proteinase At4g11320 OS=Arabidop... [more]
CATL2_HUMAN3.503e-2241.72Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC34209G01EF PostHarveN Citrus clementina cDNA clone C34209G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932542 ID=FC932542; Name=FC932542; organism=Citrus clementina; type=EST; length=685bp
GATTGATATCAGCATTGTCTAAAACATGGGATCTAAAACAGTAGTTTTCT
TTCTGGTCTCTCTCGTCGTCGTCTCCGCCGTTTCATCAGGGACGTTGATC
GACGATGTTGATCAGCTGATCAGTCAAGTAACGGACTGCGGTGACGAGAT
CCTAAGCCACCACGAGAGCACCAACAACGACCTCTTGGGCGCAGAGCACC
ACCTCTCCCTATTCAAGAAGAAGTTCAATAAAGCGTACGCTTCGCAGGAG
GAGCACGACCGTAGGTTCACTATTTTCAAGGCCAACTTGCGACGCGCCGC
GCGTCGCCAGAAGCTCGACCCGAGCGCCACCCACGGCGTCACTCAGTTCT
CCGACTTGACTCCGGCCGAGTTCCGCCGGACGTACCTTGGCCTCAGGAGG
AAGCTGAGGCTGCCTAAGGATGCGGATCAGGCGCCGATCTTGCCTACGAA
TGATTTGCCGGCGGATTTTGATTGGAGAGAGAAGGGCGCTGTAGGCCCTG
TTAAAGATCAGGGTTCATGCGGATCATGCTGGAGTTTCAGTACAACAGGG
GCCTTGGAAGGTGCTAACTTCCTGGCAACTGGAAAGCTTGTGAGCCTCAG
TGAGCAACAGCTTGTGGATTGCGATCATGAGTGTGATCCTGAGGAACCAG
GTTCTTGTGATTCTGGATGCAATGGTGGGCTTATG
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