FC932545

Overview
NameFC932545
Unique NameFC932545
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14166 contig Ccv1_Contig14166:32..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932545 vs. ExPASy Swiss-Prot
Match: EFTU_LACGA (Elongation factor Tu OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=tuf PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.226e-21
Identity = 68/200 (34.00%), Postives = 97/200 (48.50%), Query Frame = 1
Query:   64 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFV---PISGFEGD 654
            + K H+NI  IGHVD GK+T T  +   L        E + +               +D    E+ERGITI+ A  ++ET   +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GVK ++   NK+D           D +  EV   L +  Y  D +P +    +   +GD
Sbjct:    9 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAEDGLAQAEDYSQ---------------IDAAPEEKERGITINTAHVEYETKNRHYAHMDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVKYIVVFLNKVDLVD---DPELIDLVEMEVRDLLTEYDYPGDDVPVIRGSALKALQGD 183          
BLAST of FC932545 vs. ExPASy Swiss-Prot
Match: EFTU_GUITH (Elongation factor Tu, chloroplastic OS=Guillardia theta GN=tufA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.226e-21
Identity = 66/189 (34.92%), Postives = 95/189 (50.26%), Query Frame = 1
Query:   64 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFV 630
            + K H+NI  IGHVD GK+T T  +   L               ++   +S K+  + D    ER RGITI+ A  ++ET K+Y   +D PGH D++KNMITG +Q D A+L+  +  G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L+K  +   +IPFV
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAISATL---------------SQYTGKSKKFDEI-DSAPEERARGITINTAHVEYETDKWYYAHVDCPGHADYVKNMITGAAQMDGAILVCSAANGPMP-------QTREHILLAKQVGVPYIVVFLNKADMVD---DEELLELVQLEVQELLEKYDFPGSEIPFV 170          
BLAST of FC932545 vs. ExPASy Swiss-Prot
Match: EFTU_EXISA (Elongation factor Tu OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.226e-21
Identity = 64/196 (32.65%), Postives = 97/196 (49.49%), Query Frame = 1
Query:   58 MGKEKV-----HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFV 630
            MGKEK      H+N+  IGHVD GK+T T  +   L     +   +F++               +D    ERERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GV  ++   NK+D       +   + +  E+   L +  +  D +P +
Sbjct:    1 MGKEKFDRSKPHVNVGTIGHVDHGKTTLTAAISAVLSKAQGKAATKFDQ---------------IDGAPEERERGITIATAHIEYETDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMP-------QTREHILLSRQVGVPYIVVFMNKVDMVD---DEELLELVEMEIRELLSEYDFPGDDLPVI 171          
BLAST of FC932545 vs. ExPASy Swiss-Prot
Match: EFTU_CHICK (Elongation factor Tu, mitochondrial (Fragment) OS=Gallus gallus GN=TUFM PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.226e-21
Identity = 64/190 (33.68%), Postives = 98/190 (51.58%), Query Frame = 1
Query:   64 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPDKIPFV 630
            +++ H+N+  IGHVD GK+T T  +   L        +R+E                +DK   ER RGITI+ A  ++ T + +    D PGH D++KNMITGT+  D  +L++ +T G          QTREH LLA  +GV+ ++   NK DA     S A    +V+ E+   L ++GY+ ++ P V
Sbjct:   43 RDRPHVNVGTIGHVDHGKTTLTAAITKVLSESGGARFQRYED---------------IDKAPEERARGITINAAHVEYSTARRHYAHTDCPGHADYVKNMITGTAPLDGCILVVAATDGQMP-------QTREHLLLARQVGVRHVVVYVNKADAV----SDAELLPLVELELRELLAEMGYDAERTPVV 206          
BLAST of FC932545 vs. ExPASy Swiss-Prot
Match: EFTU_BORBZ (Elongation factor Tu OS=Borrelia burgdorferi (strain ZS7) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.226e-21
Identity = 63/197 (31.98%), Postives = 103/197 (52.28%), Query Frame = 1
Query:   55 IMGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGF 645
            +  + K H+N+  IGHVD GK+T T  +      ++K             + ++ KY  + D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+      + +  EV   ++K G++ D  P +  S F
Sbjct:    5 VFQRTKPHMNVGTIGHVDHGKTTLTAAISIYCSKLNK-------------DAKALKYEDI-DNAPEEKARGITINARHIEYETANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPEL----VELVEVEVLELVEKYGFSAD-TPIIKGSAF 175          
BLAST of FC932545 vs. ExPASy Swiss-Prot
Match: EFTU_BORBU (Elongation factor Tu OS=Borrelia burgdorferi GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.226e-21
Identity = 63/197 (31.98%), Postives = 103/197 (52.28%), Query Frame = 1
Query:   55 IMGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGF 645
            +  + K H+N+  IGHVD GK+T T  +      ++K             + ++ KY  + D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+      + +  EV   ++K G++ D  P +  S F
Sbjct:    5 VFQRTKPHMNVGTIGHVDHGKTTLTAAISIYCSKLNK-------------DAKALKYEDI-DNAPEEKARGITINARHIEYETANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPEL----VELVEVEVLELVEKYGFSAD-TPIIKGSAF 175          
BLAST of FC932545 vs. ExPASy Swiss-Prot
Match: EFTU_BDEBA (Elongation factor Tu OS=Bdellovibrio bacteriovorus GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.226e-21
Identity = 67/200 (33.50%), Postives = 94/200 (47.00%), Query Frame = 1
Query:   64 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFV---PISGFEGD 654
            + K H+NI  IGHVD GK+T T  +   L    K     +++               +DK   E+ RGITI     ++ET   +   +D PGH D++KNMITG +Q D A+L++ S  G          QTREH LLA  +GV  ++   NK+D       K   + +  EV   L K  +  D IP V    +   EGD
Sbjct:    8 RNKPHVNIGTIGHVDHGKTTLTAAITTTLAASGKAQAMAYDQ---------------IDKSPEEKARGITISTTHVEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSSADGPMP-------QTREHILLARQVGVPALVVFMNKVDMVD---DKELLELVELEVRELLSKYEFPGDDIPVVKGSALKALEGD 182          
BLAST of FC932545 vs. ExPASy Swiss-Prot
Match: EFTU2_SHESM (Elongation factor Tu 2 OS=Shewanella sp. (strain MR-4) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.226e-21
Identity = 73/228 (32.02%), Postives = 113/228 (49.56%), Query Frame = 1
Query:   64 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPDKIPFV---PISGFEGD-----NMIERSTNLDWYRAHPS*ALDR 720
            + K H+N+  IGHVD GK+T T  + + L        + +  EA + ++        +D    ERERGITI+ +  +++T   +   +D PGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GV  +I   NK D        A   E+V+ EV   L +  +  D +P +    +   EG+      +IE +  LD Y   P   +D+
Sbjct:    8 RNKPHVNVGTIGHVDHGKTTLTAAISHVLA-------KTYGGEAKDFSQ--------IDNAPEERERGITINTSHIEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVPFIIVFMNKCDMV----DDAELLELVEMEVRELLSEYDFPGDDLPVIQGSALKALEGEPEWEAKIIELAAALDSYIPEPERDIDK 209          
BLAST of FC932545 vs. ExPASy Swiss-Prot
Match: EFTU_SYNS3 (Elongation factor Tu OS=Synechococcus sp. (strain CC9311) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.519e-21
Identity = 70/199 (35.18%), Postives = 99/199 (49.75%), Query Frame = 1
Query:   64 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK----EVSSYLKKVGYNPDKIPFVPISGFE 648
            + K H+NI  IGHVD GK+T T  +   L           +K  AE+      YA + D    ERERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L+  +T G          QT+EH LLA  +GV  ++   NK D           +EI++    E+   L    +  D IP V +SG +
Sbjct:    8 RNKPHVNIGTIGHVDHGKTTLTAAITNVLA----------KKGQAEVQN----YADI-DGAPEERERGITINTAHVEYETDSRHYAHVDCPGHADYVKNMITGAAQMDGAILVCAATDGPM-------AQTKEHILLAKQVGVPALVVALNKCDMVDD-------EEIIELVELEIRELLSSYDFPGDDIPVVQVSGLK 177          
BLAST of FC932545 vs. ExPASy Swiss-Prot
Match: EFTU_SULNB (Elongation factor Tu OS=Sulfurovum sp. (strain NBC37-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.519e-21
Identity = 66/208 (31.73%), Postives = 97/208 (46.63%), Query Frame = 1
Query:   64 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDW 687
            + K HINI  IGHVD GK+T T  +   L       +  ++                +D    ERERGITI  +  ++ET   +   +D PGH D++KNMITG +Q D A+L+I +T G          QTREH LL+  +GV  ++   NK D    +  +   + +  EV   L +  +  D  P V  S F+     +  T  +W
Sbjct:    8 RTKPHINIGTIGHVDHGKTTLTAAITAVLAVAGDTELMDYD---------------AIDNAPEERERGITIATSHVEYETATRHYAHVDCPGHADYVKNMITGAAQMDGAILVIAATDGPM-------AQTREHILLSKQVGVPYIVVFLNKEDQLDDEDKEEMLELVEMEVRELLSEYDFPGDDTPIVAGSAFQALEEAKTGTLGEW 193          
The following BLAST results are available for this feature:
BLAST of FC932545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_LACGA4.226e-2134.00Elongation factor Tu OS=Lactobacillus gasseri (str... [more]
EFTU_GUITH4.226e-2134.92Elongation factor Tu, chloroplastic OS=Guillardia ... [more]
EFTU_EXISA4.226e-2132.65Elongation factor Tu OS=Exiguobacterium sp. (strai... [more]
EFTU_CHICK4.226e-2133.68Elongation factor Tu, mitochondrial (Fragment) OS=... [more]
EFTU_BORBZ4.226e-2131.98Elongation factor Tu OS=Borrelia burgdorferi (stra... [more]
EFTU_BORBU4.226e-2131.98Elongation factor Tu OS=Borrelia burgdorferi GN=tu... [more]
EFTU_BDEBA4.226e-2133.50Elongation factor Tu OS=Bdellovibrio bacteriovorus... [more]
EFTU2_SHESM4.226e-2132.02Elongation factor Tu 2 OS=Shewanella sp. (strain M... [more]
EFTU_SYNS35.519e-2135.18Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_SULNB5.519e-2131.73Elongation factor Tu OS=Sulfurovum sp. (strain NBC... [more]

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Properties
Property NameValue
Genbank descriptionC34209G05EF PostHarveN Citrus clementina cDNA clone C34209G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932545 ID=FC932545; Name=FC932545; organism=Citrus clementina; type=EST; length=722bp
ATCGCTTGCGGCTAGGGTTTTAGCAGAGCTCTTTCAATTTTAAGCAAATA
CTTTATCATGGGCAAGGAGAAGGTTCATATCAATATTGTGGTTATTGGCC
ATGTCGACTCTGGGAAGTCAACCACCACCGGTCACTTGATCTACAAGCTT
GGAGGTATTGACAAGCGTGTGATTGAGCGGTTCGAGAAGGAAGCTGCTGA
GATGAACAAGAGATCATTCAAGTACGCATGGGTGCTTGACAAGCTCAAGG
CTGAGCGTGAGCGTGGTATCACCATTGATATTGCTTTGTGGAAGTTCGAG
ACCACGAAGTACTACTGCACTGTCATTGATGCCCCTGGACATCGTGACTT
TATTAAGAACATGATTACTGGTACTTCTCAGGCTGATTGTGCTGTCCTTA
TCATCGACTCCACCACTGGTGGTTTTGAAGCTGGTATCTCTAAGGATGGG
CAGACCAGAGAGCACGCTCTACTTGCTTTCACCCTTGGTGTGAAGCAAAT
GATTTGTTGCTGTAACAAGATGGATGCCACCACTCCCAAGTATTCAAAGG
CAAGATATGATGAAATTGTTAAGGAAGTCTCTTCCTACTTGAAGAAGGTT
GGCTACAACCCAGATAAGATTCCATTTGTCCCAATCTCTGGATTTGAGGG
TGATAACATGATTGAGAGGTCCACAAACCTTGACTGGTACAGGGCCCACC
CTTCTTGAGCTCTTGACAGATC
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