FC932554

Overview
NameFC932554
Unique NameFC932554
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932554_ssr599 microsatellite FC932554_ssr599:599..608. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9364 contig Ccv1_Contig9364:6..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932554 vs. ExPASy Swiss-Prot
Match: ATXB_LEIDO (Probable proton ATPase 1B OS=Leishmania donovani GN=H1B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 48/182 (26.37%), Postives = 90/182 (49.45%), Query Frame = 3
Query:   15 MVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRK---TDFFSDAFGVR-SLRTRPD-EMMAALYLQVSIISQALIFVTRSRS-WSFIERPGLLLATAFVIAQLVATFIAVYANWSFAR-----IEGCGWGWAGV-------IWLYSLVTYFPLDILK 506
            M ++I +LNDG +MTI  D V PS +P  W L  +F +  +L +     +++  W+  +   + ++ +++  R  L   P  +++  +YL++SI     +F +R+   + F   P  +L    +I+ LV+T  A +  W  +R      EG  WG           +W+Y +V +F  D++K
Sbjct:  705 MFMLITLLNDGCLMTIGYDHVIPSERPQKWNLPVVFVSASILAAVACGSSLMLLWIGLEGYSSQYYENSWFHRLGLAQLPQGKLVTMMYLKISISDFLTLFSSRTGGHFFFYVPPSPILFCGAIISLLVSTMAASF--WHKSRPDNVLTEGLAWGQTNAEKLLPLWVWIYCIVWWFVQDVVK 884          
BLAST of FC932554 vs. ExPASy Swiss-Prot
Match: ATXA_LEIDO (Probable proton ATPase 1A OS=Leishmania donovani GN=H1A PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 48/182 (26.37%), Postives = 90/182 (49.45%), Query Frame = 3
Query:   15 MVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRK---TDFFSDAFGVR-SLRTRPD-EMMAALYLQVSIISQALIFVTRSRS-WSFIERPGLLLATAFVIAQLVATFIAVYANWSFAR-----IEGCGWGWAGV-------IWLYSLVTYFPLDILK 506
            M ++I +LNDG +MTI  D V PS +P  W L  +F +  +L +     +++  W+  +   + ++ +++  R  L   P  +++  +YL++SI     +F +R+   + F   P  +L    +I+ LV+T  A +  W  +R      EG  WG           +W+Y +V +F  D++K
Sbjct:  705 MFMLITLLNDGCLMTIGYDHVIPSERPQKWNLPVVFVSASILAAVACGSSLMLLWIGLEGYSSQYYENSWFHRLGLAQLPQGKLVTMMYLKISISDFLTLFSSRTGGHFFFYMPPSPILFCGAIISLLVSTMAASF--WHKSRPDNVLTEGLAWGQTNAEKLLPLWVWIYCIVWWFVQDVVK 884          
The following BLAST results are available for this feature:
BLAST of FC932554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
ATXB_LEIDO1.574e-1126.37Probable proton ATPase 1B OS=Leishmania donovani G... [more]
ATXA_LEIDO1.574e-1126.37Probable proton ATPase 1A OS=Leishmania donovani G... [more]

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Properties
Property NameValue
Genbank descriptionC34209H02EF PostHarveN Citrus clementina cDNA clone C34209H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932554 ID=FC932554; Name=FC932554; organism=Citrus clementina; type=EST; length=675bp
ACTTTTCTCCATTCATGGTTCTGATTATTGCCATTTTAAATGACGGAACA
ATCATGACAATTTCAAAGGATCGTGTTAAGCCGTCCCCTCAACCAGACAG
CTGGAAACTAAAAGAGATTTTTGCCACTGGCGTTGTGCTTGGAAGTTACT
TGGCCATCATGACTGTTGTATTCTTCTGGTTAATGAGGAAGACTGACTTT
TTCTCGGACGCGTTTGGTGTAAGATCATTAAGAACTAGACCCGATGAGAT
GATGGCCGCTTTATACTTGCAAGTCAGTATTATTAGCCAGGCCCTTATTT
TTGTCACGAGGTCCCGCAGCTGGTCCTTTATTGAACGCCCTGGACTTCTC
TTAGCCACGGCATTTGTGATTGCTCAGCTTGTAGCAACTTTCATAGCGGT
CTATGCAAATTGGAGTTTTGCACGGATAGAGGGTTGTGGCTGGGGCTGGG
CCGGGGTAATCTGGCTTTACAGTCTGGTAACATATTTTCCTCTTGACATA
CTCAAGTTCGGAATCCGCTACATCCTCAGTGGAAAGGCTTGGGATACTCT
TCTGGAGAACAAGACTGCCTTCACTACCAAGAAAGACTACGGTAAAGAAG
AGAGAGAGGCACAATGGGCAGCCGCACAAAGGACCTTACACGGTCTTCAC
CACCCGAAACAACGGCATTTTCTCT
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