FC932557

Overview
NameFC932557
Unique NameFC932557
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HFB2A_ORYSJ (Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.439e-36
Identity = 69/92 (75.00%), Postives = 78/92 (84.78%), Query Frame = 1
Query:  247 PFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 522
            PFLTKTY +V+D + D+ ISWN  GT FVVW P  FARDLLP++FKH+NFSSFVRQLNTYGFKKVV DRWEF+NDCFRRGE+ LL  IQRRK
Sbjct:   10 PFLTKTYAMVEDPSTDETISWNDSGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADRWEFANDCFRRGEKHLLGGIQRRK 101          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HFB4A_ORYSJ (Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica GN=HSFB4A PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.631e-35
Identity = 69/100 (69.00%), Postives = 81/100 (81.00%), Query Frame = 1
Query:  238 MPTPFLTKTYQLVDDQAIDDVISWNKD-----GTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 522
            +P PFLTKTYQLVDD A D V+SW  D      ++FVVW P  FARD+LP YFKH+NFSSFVRQLNTYGF+KVVP+RWEF+N+ FR+GE+QLL EI RRK
Sbjct:   22 VPAPFLTKTYQLVDDPATDHVVSWEDDDGGESASSFVVWRPPEFARDILPNYFKHSNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLCEIHRRK 121          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HSFB1_ORYSJ (Heat stress transcription factor B-1 OS=Oryza sativa subsp. japonica GN=HSFB1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.760e-34
Identity = 68/94 (72.34%), Postives = 78/94 (82.98%), Query Frame = 1
Query:  241 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 522
            P PFLTKT Q+V++ A D+VISW K+G +FVVW P  FARDLLP +FKH NFSSFVRQLNTYGF+KVVPDRWEF+N  FRRGEQ LL  I+RRK
Sbjct:   28 PAPFLTKTNQMVEESATDEVISWGKEGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDRWEFANGNFRRGEQGLLSGIRRRK 121          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HFA1A_ARATH (Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.490e-33
Identity = 61/96 (63.54%), Postives = 80/96 (83.33%), Query Frame = 1
Query:  235 SMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 522
            S+P PFL+KTY +V+D A D ++SW+    +F+VW+P  F+RDLLP+YFKHNNFSSFVRQLNTYGF+KV PDRWEF+N+ F RG++ LL++I RRK
Sbjct:   48 SLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRK 143          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HSFA1_ORYSJ (Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.945e-33
Identity = 69/123 (56.10%), Postives = 83/123 (67.48%), Query Frame = 1
Query:  154 MTPPPTAMEQNGXXXXXXXXXXXXXQRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 522
            + PPP A   NG               + P PFL KTY++VDD A D V+SW     +FVVWN   FARDLLP+YFKH+NFSSFVRQLNTYGF+KV PDRWEF+N+ F RG++ LL+ I RRK
Sbjct:   19 VAPPPGAAVSNGVA-------------TAPPPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRK 128          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HFA2C_ORYSJ (Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica GN=HSFA2C PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.334e-33
Identity = 64/94 (68.09%), Postives = 78/94 (82.98%), Query Frame = 1
Query:  241 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 522
            P PFLTKTY LV+D A D V+SW++ G +FVVW+P +FA  LLPR FKHNNFSSFVRQLNTYGF+KV PDRWEF+N+ F RG++ LL+ I+RRK
Sbjct:   40 PPPFLTKTYDLVEDPATDGVVSWSRAGNSFVVWDPHVFADLLLPRLFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKTIKRRK 133          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HSF8_SOLPE (Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.660e-33
Identity = 61/94 (64.89%), Postives = 76/94 (80.85%), Query Frame = 1
Query:  241 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 522
            P PFL KTY +VDD + D ++SW+    +FVVW+P  FA+DLLP+YFKHNNFSSFVRQLNTYGF+KV PDRWEF+N+ F RG++ LL+ I RRK
Sbjct:   39 PPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRK 132          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HSF8_SOLLC (Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.660e-33
Identity = 61/94 (64.89%), Postives = 76/94 (80.85%), Query Frame = 1
Query:  241 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 522
            P PFL KTY +VDD + D ++SW+    +FVVW+P  FA+DLLP+YFKHNNFSSFVRQLNTYGF+KV PDRWEF+N+ F RG++ LL+ I RRK
Sbjct:   37 PPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRK 130          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HFA4D_ORYSJ (Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.151e-32
Identity = 60/94 (63.83%), Postives = 75/94 (79.79%), Query Frame = 1
Query:  241 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 522
            P PFL KTY++V+D A + V+SW   G +FVVWNP  F+RDLLP+YFKHNNFSSF+RQLNTYGF+K+ P+RWEF+N+ F RG   LL+ I RRK
Sbjct:   18 PPPFLIKTYEMVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPERWEFANEDFIRGHTHLLKNIHRRK 111          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HFA4A_ARATH (Heat stress transcription factor A-4a OS=Arabidopsis thaliana GN=HSFA4A PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.809e-32
Identity = 59/96 (61.46%), Postives = 79/96 (82.29%), Query Frame = 1
Query:  235 SMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 522
            S+P PFLTKTY++VDD + D ++SW++   +F+VWNP  F+RDLLPR+FKHNNFSSF+RQLNTYGF+K  P++WEF+ND F RG+  L++ I RRK
Sbjct:   12 SLP-PFLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQWEFANDDFVRGQPHLMKNIHRRK 106          
The following BLAST results are available for this feature:
BLAST of FC932557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
HFB2A_ORYSJ1.439e-3675.00Heat stress transcription factor B-2a OS=Oryza sat... [more]
HFB4A_ORYSJ4.631e-3569.00Putative heat stress transcription factor B-4a OS=... [more]
HSFB1_ORYSJ1.760e-3472.34Heat stress transcription factor B-1 OS=Oryza sati... [more]
HFA1A_ARATH1.490e-3363.54Heat stress transcription factor A-1a OS=Arabidops... [more]
HSFA1_ORYSJ1.945e-3356.10Heat stress transcription factor A-1 OS=Oryza sati... [more]
HFA2C_ORYSJ4.334e-3368.09Heat stress transcription factor A-2c OS=Oryza sat... [more]
HSF8_SOLPE5.660e-3364.89Heat shock factor protein HSF8 OS=Solanum peruvian... [more]
HSF8_SOLLC5.660e-3364.89Heat shock factor protein HSF8 OS=Solanum lycopers... [more]
HFA4D_ORYSJ2.151e-3263.83Heat stress transcription factor A-4d OS=Oryza sat... [more]
HFA4A_ARATH2.809e-3261.46Heat stress transcription factor A-4a OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC34209H07EF PostHarveN Citrus clementina cDNA clone C34209H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932557 ID=FC932557; Name=FC932557; organism=Citrus clementina; type=EST; length=678bp
GGTTCCCTCTCCCTCTTTAACTCCTCATTCCGAAATGACGAACCTTCTAG
AATCACCATAACCAACTTCTCACCTTCACCCTCCCCACAAAGAAAAATTA
AAGAATAAAAAAAATCTCCCCTTTCAACCTGATTTCAATTACACTTTATC
CATATGACTCCGCCTCCGACGGCAATGGAGCAGAACGGAGACTCTACACC
GTCGCCGACGACTACGGCCAGCGACTCTCAACGTTCTATGCCGACGCCGT
TTTTGACGAAAACTTATCAGTTAGTTGACGATCAGGCGATTGACGACGTT
ATTTCGTGGAACAAAGACGGAACTACGTTCGTCGTCTGGAATCCTACCAT
TTTCGCTAGAGATTTGCTTCCTAGATACTTCAAACACAACAATTTTTCTA
GCTTCGTTCGTCAACTCAACACTTATGGGTTTAAAAAAGTAGTGCCCGAT
CGGTGGGAGTTTTCTAACGACTGCTTCCGCCGTGGCGAGCAACAGCTTCT
GCGTGAAATTCAGCGACGGAAGATTCAATCAGCGGCGACGGCGCAGCCTG
TCACCGTTGCGGTGCCGGCCGTGGTTCCGGTGGCGAAACCGATTGTGTCG
CCGTCGAATTCGGGGGAAGAGCAGGTGATTTCGTCGAACTCATCACCGGC
AGCGGGAGCGGCCGGGTGTACCGCTCAC
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