FC932557

Overview
NameFC932557
Unique NameFC932557
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HSF_KLULA (Heat shock factor protein OS=Kluyveromyces lactis GN=HSF PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 1
Query:  250 FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVV-----------PDRWEFSNDCFRRGEQQLLREIQRRK 522
            F+ K + +V+D++ +  I W+  G + VV N   F +++LP+YFKH+NF+SFVRQLN YG+ KV              RWEF N+ F+RG++ LL  I R+K
Sbjct:  197 FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENENFKRGKEYLLENIVRQK 298          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HSF_DROME (Heat shock factor protein OS=Drosophila melanogaster GN=Hsf PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.655e-16
Identity = 44/100 (44.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:  250 FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVP----------DRWEFSNDCFRRGEQQLLREIQRR 519
            FL K ++LVDD   + +I W KDG +FV+ N   FA++LLP  +KHNN +SF+RQLN YGF K+            D  EFS+  F+R    LL +I+R+
Sbjct:   49 FLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 148          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HSF2_MOUSE (Heat shock factor protein 2 OS=Mus musculus GN=Hsf2 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 43/108 (39.81%), Postives = 68/108 (62.96%), Query Frame = 1
Query:  229 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVV-----------PDRWEFSNDCFRRGEQQLLREIQRR 519
            Q S    FL+K + LV++   ++ I+W+++G +F+V +   FA+++LP+YFKHNN +SFVRQLN YGF+KVV               EF +  F++G+  LL  I+R+
Sbjct:    3 QSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIESGIIKQERDGPVEFQHPYFKQGQDDLLENIKRK 110          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HSF2_HUMAN (Heat shock factor protein 2 OS=Homo sapiens GN=HSF2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 43/108 (39.81%), Postives = 68/108 (62.96%), Query Frame = 1
Query:  229 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVV-----------PDRWEFSNDCFRRGEQQLLREIQRR 519
            Q S    FL+K + LV++   ++ I+W+++G +F+V +   FA+++LP+YFKHNN +SFVRQLN YGF+KVV               EF +  F++G+  LL  I+R+
Sbjct:    3 QSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIDSGIVKQERDGPVEFQHPYFKQGQDDLLENIKRK 110          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HSF_SCHPO (Heat shock factor protein OS=Schizosaccharomyces pombe GN=hsf1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 1
Query:  244 TPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKV------------VPDRWEFSNDCFRRGEQQLLREIQRRKIQS 531
            T F  K Y +V+D + D +I W+  G +F+V     FA+ +LPRYFKHNNFSSFVRQLN YGF KV              +  EF+N  F+R + +LL  + R+K  S
Sbjct:   51 TQFSNKLYNMVNDSSTDSLIRWSDRGDSFLVIGHEDFAKLVLPRYFKHNNFSSFVRQLNMYGFHKVPHIQQGVLQSDSPNELLEFANPNFQRDQPELLCLVTRKKAGS 158          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HSF2_CHICK (Heat shock factor protein 2 OS=Gallus gallus GN=HSF2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 41/101 (40.59%), Postives = 65/101 (64.36%), Query Frame = 1
Query:  250 FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVV-----------PDRWEFSNDCFRRGEQQLLREIQRR 519
            FL+K + LV +   + +I+W+++G +F+V +   FA+++LP+YFKHNN +SFVRQLN YGF+KVV               EF +  F++G + LL  I+R+
Sbjct:   24 FLSKLWALVGEAPSNQLITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHVDSGIVKLERDGLVEFQHPYFKQGREDLLEHIKRK 124          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: PRR1_SCHPO (Transcription factor prr1 OS=Schizosaccharomyces pombe GN=prr1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12
Identity = 35/100 (35.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:  250 FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDR----------WEFSNDCFRRGEQQLLREIQRR 519
            F+ K + ++++     ++ W+  G +F+V +   F + +LPR+FKH+NF+SFVRQLN Y F KV  +           WEF +D F+   + LL  I+R+
Sbjct:   10 FVRKLFNMLEEPEYRHILRWSDSGDSFIVLDTNEFTKTILPRHFKHSNFASFVRQLNKYDFHKVRHEEGAPSIYGEGAWEFRHDDFQLHHKDLLDNIKRK 109          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HMS2_YEAST (Probable transcription factor HMS2 OS=Saccharomyces cerevisiae GN=HMS2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 1
Query:  241 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKV-VPDRWEFSNDCFRR 483
            P  F++K Y L+   A  ++I W+ DG+  V+WNP  F + +L R+F  + F++FV+QL+ Y F+K   PD  EFSN  F++
Sbjct:   10 PDVFVSKLYHLLQGNAYSNIIQWSTDGSKLVIWNPDQFTKVILERFFGIHTFAAFVKQLSKYNFQKAGRPDCVEFSNIHFQK 91          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: SKN7_YEAST (Transcription factor SKN7 OS=Saccharomyces cerevisiae GN=SKN7 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 35/102 (34.31%), Postives = 57/102 (55.88%), Query Frame = 1
Query:  250 FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVV------------PDRWEFSNDCFRRGEQQLLREIQRR 519
            F+ K ++++++    D+++W ++G +FVV +   F   +LP +FKH+NF+SFVRQLN Y F KV                WEF +  FR    + L  I+R+
Sbjct:   87 FVRKLFRILENNEYPDIVTWTENGKSFVVLDTGKFTTHILPNHFKHSNFASFVRQLNKYDFHKVKRSPEERQRCKYGEQSWEFQHPEFRVHYGKGLDNIKRK 188          
The following BLAST results are available for this feature:
BLAST of FC932557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
HSF_KLULA5.687e-1742.16Heat shock factor protein OS=Kluyveromyces lactis ... [more]
HSF_DROME1.655e-1644.00Heat shock factor protein OS=Drosophila melanogast... [more]
HSF2_MOUSE2.822e-1639.81Heat shock factor protein 2 OS=Mus musculus GN=Hsf... [more]
HSF2_HUMAN2.822e-1639.81Heat shock factor protein 2 OS=Homo sapiens GN=HSF... [more]
HSF_SCHPO4.814e-1643.52Heat shock factor protein OS=Schizosaccharomyces p... [more]
HSF2_CHICK1.072e-1540.59Heat shock factor protein 2 OS=Gallus gallus GN=HS... [more]
PRR1_SCHPO1.110e-1235.00Transcription factor prr1 OS=Schizosaccharomyces p... [more]
HMS2_YEAST7.194e-1240.24Probable transcription factor HMS2 OS=Saccharomyce... [more]
SKN7_YEAST4.663e-1134.31Transcription factor SKN7 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC34209H07EF PostHarveN Citrus clementina cDNA clone C34209H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932557 ID=FC932557; Name=FC932557; organism=Citrus clementina; type=EST; length=678bp
GGTTCCCTCTCCCTCTTTAACTCCTCATTCCGAAATGACGAACCTTCTAG
AATCACCATAACCAACTTCTCACCTTCACCCTCCCCACAAAGAAAAATTA
AAGAATAAAAAAAATCTCCCCTTTCAACCTGATTTCAATTACACTTTATC
CATATGACTCCGCCTCCGACGGCAATGGAGCAGAACGGAGACTCTACACC
GTCGCCGACGACTACGGCCAGCGACTCTCAACGTTCTATGCCGACGCCGT
TTTTGACGAAAACTTATCAGTTAGTTGACGATCAGGCGATTGACGACGTT
ATTTCGTGGAACAAAGACGGAACTACGTTCGTCGTCTGGAATCCTACCAT
TTTCGCTAGAGATTTGCTTCCTAGATACTTCAAACACAACAATTTTTCTA
GCTTCGTTCGTCAACTCAACACTTATGGGTTTAAAAAAGTAGTGCCCGAT
CGGTGGGAGTTTTCTAACGACTGCTTCCGCCGTGGCGAGCAACAGCTTCT
GCGTGAAATTCAGCGACGGAAGATTCAATCAGCGGCGACGGCGCAGCCTG
TCACCGTTGCGGTGCCGGCCGTGGTTCCGGTGGCGAAACCGATTGTGTCG
CCGTCGAATTCGGGGGAAGAGCAGGTGATTTCGTCGAACTCATCACCGGC
AGCGGGAGCGGCCGGGTGTACCGCTCAC
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