FC932563

Overview
NameFC932563
Unique NameFC932563
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932563 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGS 684
            HYRGVRRRPWGK+AAEIRDP + G RVWLGT++T            +++RGS
Sbjct:  104 HYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGS 155          
BLAST of FC932563 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRG 681
            HYRGVRRRPWGK+AAEIRDP ++G R+WLGTF++            F+LRG
Sbjct:  106 HYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRG 156          
BLAST of FC932563 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRG 681
            HYRGVRRRPWGK+AAEIRDP ++G R+WLGTF++            F+LRG
Sbjct:  109 HYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRG 159          
BLAST of FC932563 vs. ExPASy Swiss-Prot
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 1
Query:  532 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGS 684
            YRGVRRRPWGK+AAEIRD TR G+RVWLGTF++            F +RGS
Sbjct:   82 YRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGS 132          
BLAST of FC932563 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGS 684
            HYRGVR+RPWGK+AAEIRDP + G RVWLGT++T            +++RGS
Sbjct:   98 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGS 149          
BLAST of FC932563 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGS 684
            HYRGVR+RPWGK+AAEIRDP + G RVWLGT++T            +++RGS
Sbjct:  102 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGS 153          
BLAST of FC932563 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11
Identity = 31/51 (60.78%), Postives = 35/51 (68.63%), Query Frame = 1
Query:  532 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGS 684
            YRGVRRRPWGKYAAEIRD  R G RVWLGTF+T            F++RG+
Sbjct:   59 YRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGA 109          
BLAST of FC932563 vs. ExPASy Swiss-Prot
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:  532 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRG 681
            +RGVRRRPWGK+AAEIRDP+R G R+WLGTF+T            F LRG
Sbjct:   20 FRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRG 69          
BLAST of FC932563 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGS 684
            HYRGVR+RPWGK+AAEIRDP + G RVWLGT+++            F++RG+
Sbjct:  106 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGT 157          
The following BLAST results are available for this feature:
BLAST of FC932563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
ERF1_TOBAC4.292e-1257.69Ethylene-responsive transcription factor 1 OS=Nico... [more]
EF107_ARATH5.606e-1258.82Ethylene-responsive transcription factor ERF107 OS... [more]
EF106_ARATH5.606e-1258.82Ethylene-responsive transcription factor ERF106 OS... [more]
ERF92_ARATH1.249e-1160.78Ethylene-responsive transcription factor 1B OS=Ara... [more]
ERF2_TOBAC1.249e-1155.77Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_NICSY1.249e-1155.77Ethylene-responsive transcription factor 2 OS=Nico... [more]
PTI5_SOLLC2.130e-1160.78Pathogenesis-related genes transcriptional activat... [more]
ERF98_ARATH3.633e-1160.00Ethylene-responsive transcription factor ERF098 OS... [more]
ERF1_SOLLC3.633e-1153.85Ethylene-responsive transcription factor 1 OS=Sola... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34210A02EF PostHarveN Citrus clementina cDNA clone C34210A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932563 ID=FC932563; Name=FC932563; organism=Citrus clementina; type=EST; length=686bp
GATACTCAAAACTCTTCAATATTTTTAAGATTCAAAAACTCTATAAGGGA
CACAGCTTGCTTAGTTGCCATGGCTACACCAATTGAAAAATCAGCGCTCG
AGTTTATCGAGCAACATTTGTTCGGCGAAAATTCTCCTATTGCGGGATTT
AGTTCGAGTTTGTCGAGCGACACTTGCTCGCAATCGCAAACGTCCAGCTC
TGCATCTTCAGATCGTAGTTTCTTCAACGATGCCGTTTTCTTCGACTATG
AATCCAAACCTCAAATCATTGATCTTGTTACACCGCAACCCACTAATACT
TGCTCTGAATTGACTAACGATTTCTTTGAATTTGACATTAGACCTCAAAT
CCAATCGCAACCGAGCAATTGTAGCTCGGAATTCGAACCCAAGCCTAAAA
TATCTCCAAATTCATCCTCTCAATCGTCTCGCAAACCGTCGCTGAAAATC
TCAGTGCCTAAGAAAGCCGAAGGTCATCATTTCACCAACCGGAAAAGCAA
GGCCAAACCTGAGAGTTCGGAAGAAAAGCATTACAGAGGAGTTCGACGGA
GGCCGTGGGGAAAGTACGCGGCCGAGATCCGAGATCCTACCCGGAGAGGC
GTACGTGTCTGGCTGGGGACATTTGACACGGCCATTGAAGCAGCTAGGGC
GTACGACCGTGCCGCTTTCCAGCTGCGCGGCTCGAA
back to top