FC932580

Overview
NameFC932580
Unique NameFC932580
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig895 contig Ccv1_Contig895:225..974. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932580 vs. ExPASy Swiss-Prot
Match: BURP5_ORYSJ (BURP domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=BURP5 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.411e-14
Identity = 49/167 (29.34%), Postives = 77/167 (46.11%), Query Frame = 2
Query:  257 GKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGN-----SVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYEADLL 742
            G FF E+ L++   + +    + M    FLPR      PFSS ++  +   F     S   S++K+ L ECE P +KGE K C  S E M+DF  S LG      + T    ++     Q   +   + +   +  Q ++CH   +PY ++ CH     R Y+A L+
Sbjct:  107 GLFFLETNLQSSKSIKL-HFANMMAGTKFLPRGEADAVPFSSKDLQEILARFGVRPGSVDASVVKNTLLECELPANKGEKKACATSLESMVDFVASSLGTRDIKAASTFLVGKDGDTPAQEYTVTGARRM--AETGQLIACHPESYPYAVFMCHLTEATRAYKASLV 270          
BLAST of FC932580 vs. ExPASy Swiss-Prot
Match: RAF1A_WHEAT (Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.741e-13
Identity = 45/162 (27.78%), Postives = 72/162 (44.44%), Query Frame = 2
Query:  263 FFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGN---SVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYEADL 739
            FF E  ++ G  +P            FLPR +    PF+++ +  +   F  + +S+  + ++  L  CE P   GE+K C  S E +++ A  VLG         T        Q   + SV+ + GG V   V+CH   +PY +Y CH+    R Y  D+
Sbjct:  169 FFHEEAVRVGKRLPFRFPPATPAALGFLPRQVADSVPFTTAALPGVLATFGVASDSATVASMEATLRACESPTIAGESKFCATSLEALVERAMEVLGTRDIRPVTSTLPRAGAPLQTYTVRSVRPVEGGPV--FVACHDEAYPYTVYRCHTTGPSRAYMVDM 328          
BLAST of FC932580 vs. ExPASy Swiss-Prot
Match: RAF1B_WHEAT (Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.842e-12
Identity = 44/162 (27.16%), Postives = 71/162 (43.83%), Query Frame = 2
Query:  263 FFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGN---SVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYEADL 739
            FF E  ++ G  +P            FLPR +    PF+++ +  +   F  + +S+    ++  L  CE P   GE+K C  S E +++ A  VLG         T        Q   + +V+ + GG V   V+CH   +PY +Y CH+    R Y  D+
Sbjct:  142 FFHEEAVRVGRRLPFHFPPATPAALGFLPRQVADSVPFTTAALPGILATFGIASDSTTVPSMEATLRACESPTIAGESKFCATSLEALVERAMGVLGTRDIRPVTSTLPRAGAPLQTYTVVAVQPVEGGPV--FVACHDEAYPYTVYRCHTTGPSRAYTVDM 301          
BLAST of FC932580 vs. ExPASy Swiss-Prot
Match: RD22_ARATH (Dehydration-responsive protein RD22 OS=Arabidopsis thaliana GN=RD22 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.118e-11
Identity = 43/139 (30.94%), Postives = 59/139 (42.45%), Query Frame = 2
Query:  338 SFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGN-----SVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYEADL 739
            +FLPR      PF S   +   + F     S    ++K  + ECE     GE K C  S E M+DF+ S LG        T    +N    K  I    VK ++  K   SV CH+  +P+ ++YCH      VY   L
Sbjct:  203 AFLPRGEAETVPFGSEKFSETLKRFSVEAGSEEAEMMKKTIEECEARKVSGEEKYCATSLESMVDFSVSKLGKYHVRAVSTEVAKKNAPMQKYKIAAAGVKKLSDDK---SVVCHKQKYPFAVFYCHKAMMTTVYAVPL 338          
BLAST of FC932580 vs. ExPASy Swiss-Prot
Match: BURPH_ORYSJ (BURP domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=BURP17 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.460e-11
Identity = 42/142 (29.58%), Postives = 65/142 (45.77%), Query Frame = 2
Query:  341 FLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLG-------NSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCH-SVPKVRVYEADLL 742
            FLPR      PFSS  +  + + F     S   + +   L +CE P +KGE K C  S E ++DF TS  G       ++V L          Q+  +  V+ + G    Q ++CH   +PY ++ CH +    R Y+A L+
Sbjct:  392 FLPRGKADSIPFSSKELPEILDRFGVRPGSDDAAEMSATLQDCELPANKGEKKACATSLESIVDFVTSSFGASDVDAASTVVLSKAVESSSLAQDYTVSGVRRMAG--TGQLIACHPESYPYAVFMCHLTEATTRAYKASLV 531          
BLAST of FC932580 vs. ExPASy Swiss-Prot
Match: BURPD_ORYSJ (BURP domain-containing protein 13 OS=Oryza sativa subsp. japonica GN=BURP13 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.247e-11
Identity = 36/159 (22.64%), Postives = 71/159 (44.65%), Query Frame = 2
Query:  263 FFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYEADL 739
            FF E  ++ G  +P            FLPR +    PF+++ +  +  +F  + +++  + +++ L  CE P   GE+K C  S E +++ A + LG          +      +   +V+ +   +    V+CH   +PY +Y CH+    R Y  ++
Sbjct:  190 FFHEEAVRVGERLPFYFPAATTSALGFLPRRVADSIPFTAAALPAVLALFGVAPDTAEAAGMRETLRTCEWPTLAGESKFCATSLEALVEGAMAALGTRDIAALASTLPRGGAPLQAYAVRAVLPVEGAGFVACHDQAYPYTVYRCHTTGPARAYMVEM 348          
BLAST of FC932580 vs. ExPASy Swiss-Prot
Match: BURPA_ORYSJ (BURP domain-containing protein 10 OS=Oryza sativa subsp. japonica GN=BURP10 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.247e-11
Identity = 51/162 (31.48%), Postives = 78/162 (48.15%), Query Frame = 2
Query:  266 FRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERP-PSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQ------GSKQNIM-IGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVY 727
            F E  LK G+++  P I     +  FL R I    P S+ N   +  +F +  +  M   I+ AL  CE   P KGE + C  S E +++FA SVLG       + +V       G+   ++ + +V G+ G  VT    CH   FP+ ++YCH++   RVY
Sbjct:  113 FLEDALKPGSIIT-PYITGIATRAPFLRRDIADSIPVSTKNFADILAMF-SPISLVMADGIQSALDTCEHHRPIKGEERACATSIESVVEFAMSVLGTRDLRAFSPDVPPEGIMPGNMYKVVAVRTVAGLRGDTVT----CHTMRFPFAVFYCHAINPTRVY 268          
The following BLAST results are available for this feature:
BLAST of FC932580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
BURP5_ORYSJ1.411e-1429.34BURP domain-containing protein 5 OS=Oryza sativa s... [more]
RAF1A_WHEAT7.741e-1327.78Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A... [more]
RAF1B_WHEAT3.842e-1227.16Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B... [more]
RD22_ARATH1.118e-1130.94Dehydration-responsive protein RD22 OS=Arabidopsis... [more]
BURPH_ORYSJ1.460e-1129.58BURP domain-containing protein 17 OS=Oryza sativa ... [more]
BURPD_ORYSJ4.247e-1122.64BURP domain-containing protein 13 OS=Oryza sativa ... [more]
BURPA_ORYSJ4.247e-1131.48BURP domain-containing protein 10 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionC34210B08EF PostHarveN Citrus clementina cDNA clone C34210B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932580 ID=FC932580; Name=FC932580; organism=Citrus clementina; type=EST; length=750bp
CATACGCCAAGAGTTCAACACTGAGAAAGTCAATTTCGCCAATTACCAGG
AGGATTTCAACAGTGTCTCGCATAAATTCTCTGGATACGGGGAGAATGCG
GACGGACAAAAGATCGGGTTCAAAGTTTATGGACCAGATCGCAGTTTTAA
AGACTATGCCAAAACCGGTGTAACTTTTGCCAGCTACAGTAAAAGCGGCT
CTGGCTCAGCCAATGGCAGTTCGGTGAATAAAAATAATAATAAATGGGTG
GAGCCGGGCAAGTTCTTCCGCGAGTCTATGCTGAAGACGGGAACTGTGAT
GCCAATGCCTGACATTCGAGATAAAATGCCTCAAAGGTCGTTTCTGCCCC
GGGCCATCGTTTCCAAGTTCCCATTTTCGAGTTCCAATGTAAACGTACTC
AAGGAAATATTCCATGCAAGTGAAAATTCTAGCATGGAGAGTATAATCAA
GGATGCGTTGAGCGAGTGTGAGCGGCCACCAAGCAAGGGCGAGACCAAAC
GGTGCATTGGCTCAGCCGAGGATATGATTGACTTCGCCACCTCAGTACTG
GGAAACAGCGTGACTCTTCGTACAACTCAGAACGTGCAAGGGTCAAAACA
GAACATTATGATTGGTTCAGTGAAGGGAATCAACGGTGGCAAAGTCACCC
AATCTGTCTCTTGTCACCAAAGCTTGTTTCCATATTTGCTATACTACTGC
CACTCGGTTCCAAAAGTGAGGGTGTATGAAGCTGATTTATTGGATCCCAA
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