FC932591

Overview
NameFC932591
Unique NameFC932591
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932591 vs. ExPASy Swiss-Prot
Match: GHRB_ERWT9 (Glyoxylate/hydroxypyruvate reductase B OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.132e-13
Identity = 69/226 (30.53%), Postives = 99/226 (43.81%), Query Frame = 2
Query:   53 PRVLLFKP-PPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLD-AFGCSISYNSRTKKPSVSYPFYSNVCE---LAANCDILIICCGLTAEPH 709
            P V+L+K  P D     DE     +   L A       D F     +  E IL SGG  V AE LR  P +R+  + S G ++ D+A    RG+ + +   V +E VAD  + L++   R +      VK  +W        G   S   G  +  K++GI+G+G IG  +A+R    FG  I YN+R         F +  C+   L A  D L I   LT + H
Sbjct:    3 PSVVLYKSLPEDLRARLDEHCHVTEINGLTAENIAKHEDVF-----RQAEGILGSGGK-VDAEFLRQAPKLRVASSISVGYDNFDVAALNDRGVLLMHTPTVLTETVADTMMALVLSSARRVVEMAERVKSGEW-------RGSISSDWFGIDVHHKKLGILGMGRIGLALAQRAHLGFGMPILYNARKHHDEAEQRFDAEYCDLDTLLAESDFLCISLPLTEQTH 215          
BLAST of FC932591 vs. ExPASy Swiss-Prot
Match: GHRB_KLEP3 (Glyoxylate/hydroxypyruvate reductase B OS=Klebsiella pneumoniae (strain 342) GN=ghrB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.295e-13
Identity = 69/235 (29.36%), Postives = 107/235 (45.53%), Query Frame = 2
Query:   53 PRVLLFKPPPDFHLFG-DECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLG---IGSKLGGKRVGIVGLGSIGSLVAKRLD-AFGCSISYNSRTKKPSVSYPFYSNVCE---LAANCDILIICCGLTAEPHMINKQS 727
            P V+L+K  PD  L   +E FS  + K L+    P  + Q  +  AQ+ E +L S    V A  L  MP +R   T S G ++ D+     R + + +   V +E VAD  + L++   R +      VK  +W +          S+G    GS +  K +GIVG+G IG  +A+R    FG  I YN+R + P     F +  C+   L    D + +   L+ E H +  Q+
Sbjct:    3 PSVILYKTLPDDLLQRLEEHFSVTQVKNLR----PETVSQHAEAFAQA-EGLLGSS-EKVDAALLEKMPKLRATSTVSVGYDNFDVEALNARRVLLMHTPTVLTETVADTVMALVLSTARRVVEVAERVKAGEWTK----------SIGPDWFGSDVHHKTLGIVGMGRIGMALAQRAHFGFGMPILYNARRQHPQAEERFNARYCDLDTLLQEADFVCLILPLSEETHHLFGQA 221          
BLAST of FC932591 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 46/133 (34.59%), Postives = 71/133 (53.38%), Query Frame = 2
Query:  197 EAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSI 589
            +AI+      VT E +   P ++++     G+++VD+     RGI V NA    S  VA+ ++GL++ L R I+ +DR VK+  W + R           +G +L GK +GI+G+G IGS V  R  AFG  I
Sbjct:   45 DAIVVRSRTKVTREVIEAAPRLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIADRSVKEGKWEKNR----------FMGIELNGKTLGIIGMGRIGSQVVVRTKAFGMDI 167          
BLAST of FC932591 vs. ExPASy Swiss-Prot
Match: GHRB_YERPY (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=ghrB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 66/232 (28.45%), Postives = 104/232 (44.83%), Query Frame = 2
Query:   53 PRVLLFKP-PPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLD-AFGCSISYNSRTKKPSVSYPFYSNVCE---LAANCDILIICCGLTAEP-HMINKQ 724
            P ++L+K  P D H    + F+ N F  L     P      L    Q  E ++ SGG  +  + L+L P +R   T S G ++ D+    +RGI + +   V +E VAD  + L++   R +      VK  +W    Q + GD +    G  +  K +GI+G+G IG  +A+R    F   + Y SR    +    F +  C    L A  D L I   +T +  HMI ++
Sbjct:    3 PSIVLYKSIPTDLHQRLAQHFTVNSFDGLTPDNQPE-----LLAALQQAEGLIGSGGK-IDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEW----QESIGDDW---FGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGRE 221          
BLAST of FC932591 vs. ExPASy Swiss-Prot
Match: GHRB_YERPS (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis GN=ghrB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 66/232 (28.45%), Postives = 104/232 (44.83%), Query Frame = 2
Query:   53 PRVLLFKP-PPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLD-AFGCSISYNSRTKKPSVSYPFYSNVCE---LAANCDILIICCGLTAEP-HMINKQ 724
            P ++L+K  P D H    + F+ N F  L     P      L    Q  E ++ SGG  +  + L+L P +R   T S G ++ D+    +RGI + +   V +E VAD  + L++   R +      VK  +W    Q + GD +    G  +  K +GI+G+G IG  +A+R    F   + Y SR    +    F +  C    L A  D L I   +T +  HMI ++
Sbjct:    3 PSIVLYKSIPTDLHQRLAQHFTVNSFDGLTPDNQPE-----LLAALQQAEGLIGSGGK-IDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEW----QESIGDDW---FGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGRE 221          
BLAST of FC932591 vs. ExPASy Swiss-Prot
Match: GHRB_YERPP (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis (strain Pestoides F) GN=ghrB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 66/232 (28.45%), Postives = 104/232 (44.83%), Query Frame = 2
Query:   53 PRVLLFKP-PPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLD-AFGCSISYNSRTKKPSVSYPFYSNVCE---LAANCDILIICCGLTAEP-HMINKQ 724
            P ++L+K  P D H    + F+ N F  L     P      L    Q  E ++ SGG  +  + L+L P +R   T S G ++ D+    +RGI + +   V +E VAD  + L++   R +      VK  +W    Q + GD +    G  +  K +GI+G+G IG  +A+R    F   + Y SR    +    F +  C    L A  D L I   +T +  HMI ++
Sbjct:    3 PSIVLYKSIPTDLHQRLAQHFTVNSFDGLTPDNQPE-----LLAALQQAEGLIGSGGK-IDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEW----QESIGDDW---FGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGRE 221          
BLAST of FC932591 vs. ExPASy Swiss-Prot
Match: GHRB_YERPN (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=ghrB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 66/232 (28.45%), Postives = 104/232 (44.83%), Query Frame = 2
Query:   53 PRVLLFKP-PPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLD-AFGCSISYNSRTKKPSVSYPFYSNVCE---LAANCDILIICCGLTAEP-HMINKQ 724
            P ++L+K  P D H    + F+ N F  L     P      L    Q  E ++ SGG  +  + L+L P +R   T S G ++ D+    +RGI + +   V +E VAD  + L++   R +      VK  +W    Q + GD +    G  +  K +GI+G+G IG  +A+R    F   + Y SR    +    F +  C    L A  D L I   +T +  HMI ++
Sbjct:    3 PSIVLYKSIPTDLHQRLAQHFTVNSFDGLTPDNQPE-----LLAALQQAEGLIGSGGK-IDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEW----QESIGDDW---FGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGRE 221          
BLAST of FC932591 vs. ExPASy Swiss-Prot
Match: GHRB_YERPG (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Angola) GN=ghrB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 66/232 (28.45%), Postives = 104/232 (44.83%), Query Frame = 2
Query:   53 PRVLLFKP-PPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLD-AFGCSISYNSRTKKPSVSYPFYSNVCE---LAANCDILIICCGLTAEP-HMINKQ 724
            P ++L+K  P D H    + F+ N F  L     P      L    Q  E ++ SGG  +  + L+L P +R   T S G ++ D+    +RGI + +   V +E VAD  + L++   R +      VK  +W    Q + GD +    G  +  K +GI+G+G IG  +A+R    F   + Y SR    +    F +  C    L A  D L I   +T +  HMI ++
Sbjct:    3 PSIVLYKSIPTDLHQRLAQHFTVNSFDGLTPDNQPE-----LLAALQQAEGLIGSGGK-IDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEW----QESIGDDW---FGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGRE 221          
BLAST of FC932591 vs. ExPASy Swiss-Prot
Match: GHRB_YERPE (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis GN=ghrB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 66/232 (28.45%), Postives = 104/232 (44.83%), Query Frame = 2
Query:   53 PRVLLFKP-PPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLD-AFGCSISYNSRTKKPSVSYPFYSNVCE---LAANCDILIICCGLTAEP-HMINKQ 724
            P ++L+K  P D H    + F+ N F  L     P      L    Q  E ++ SGG  +  + L+L P +R   T S G ++ D+    +RGI + +   V +E VAD  + L++   R +      VK  +W    Q + GD +    G  +  K +GI+G+G IG  +A+R    F   + Y SR    +    F +  C    L A  D L I   +T +  HMI ++
Sbjct:    3 PSIVLYKSIPTDLHQRLAQHFTVNSFDGLTPDNQPE-----LLAALQQAEGLIGSGGK-IDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEW----QESIGDDW---FGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGRE 221          
BLAST of FC932591 vs. ExPASy Swiss-Prot
Match: GHRB_YERPB (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=ghrB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 66/232 (28.45%), Postives = 104/232 (44.83%), Query Frame = 2
Query:   53 PRVLLFKP-PPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLD-AFGCSISYNSRTKKPSVSYPFYSNVCE---LAANCDILIICCGLTAEP-HMINKQ 724
            P ++L+K  P D H    + F+ N F  L     P      L    Q  E ++ SGG  +  + L+L P +R   T S G ++ D+    +RGI + +   V +E VAD  + L++   R +      VK  +W    Q + GD +    G  +  K +GI+G+G IG  +A+R    F   + Y SR    +    F +  C    L A  D L I   +T +  HMI ++
Sbjct:    3 PSIVLYKSIPTDLHQRLAQHFTVNSFDGLTPDNQPE-----LLAALQQAEGLIGSGGK-IDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEW----QESIGDDW---FGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGRE 221          
The following BLAST results are available for this feature:
BLAST of FC932591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
GHRB_ERWT91.132e-1330.53Glyoxylate/hydroxypyruvate reductase B OS=Erwinia ... [more]
GHRB_KLEP33.295e-1329.36Glyoxylate/hydroxypyruvate reductase B OS=Klebsiel... [more]
SERA_METTH4.303e-1334.59D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
GHRB_YERPY5.620e-1328.45Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPS5.620e-1328.45Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPP5.620e-1328.45Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPN5.620e-1328.45Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPG5.620e-1328.45Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPE5.620e-1328.45Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPB5.620e-1328.45Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]

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Properties
Property NameValue
Genbank descriptionC34210C07EF PostHarveN Citrus clementina cDNA clone C34210C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932591 ID=FC932591; Name=FC932591; organism=Citrus clementina; type=EST; length=728bp
GACGATGGAAGCATATCATGGGCATGGCAAAGAAAAAGAATCCCAAGACC
TCCCGAGAGTACTCCTGTTTAAGCCGCCACCGGACTTTCACCTCTTCGGA
GACGAATGCTTTTCCTCAAACAAGTTCAAGTTCTTGAAGGCGTGGGAATC
TCCTCTCCCACTTGACCAATTCTTGAAAACACATGCACAGTCAGTCGAAG
CCATTCTCTCATCGGGTGGCGCCCCGGTGACAGCCGAGACCTTGCGGCTG
ATGCCGGCCGTTCGATTGGTGATGACCACGAGCGCCGGACTCAACCACGT
CGACATCGCCGAGTGCCGACGCCGCGGCATCACTGTAGCTAATGCTGGAA
ACGTTTTCTCCGAAGATGTTGCTGATTTGGCCGTGGGGTTGCTTATTGAT
TTGTTAAGGAACATTTCTGCTTCTGATCGGTTTGTTAAACAATGGCTTCG
GCCTCGTCAAGCTGCTGAAGGGGACTGCTATTCTCTCGGCATCGGCAGTA
AGCTGGGAGGTAAGCGAGTTGGGATTGTTGGATTGGGAAGCATTGGCTCA
TTAGTTGCTAAAAGACTAGATGCCTTTGGATGCTCCATATCATACAACTC
AAGGACGAAGAAACCATCTGTCTCATACCCTTTCTATTCAAATGTCTGTG
AACTTGCAGCTAACTGCGATATCCTCATTATTTGCTGTGGATTAACTGCT
GAACCACACATGATCAATAAGCAGTCTT
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