FC932591

Overview
NameFC932591
Unique NameFC932591
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932591 vs. ExPASy Swiss-Prot
Match: Y1888_STAEQ (Putative 2-hydroxyacid dehydrogenase SERP1888 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1888 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 46/173 (26.59%), Postives = 77/173 (44.51%), Query Frame = 2
Query:  173 LKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCDILII 682
            LK   +  +A++S     V  + +     ++++    AG N++D+   R++ I V N  +  +   ADL +GL++ + R I   D      L      +G       G ++ GK +GI+GLG IG  VAKR  AF   + Y    +K          Y ++  L  N D + I
Sbjct:   38 LKKGVEHADALISLLSTSVDKDIIDSANNLKIIANYGAGFNNIDVEYARQQNIDVTNTPHASTNATADLTIGLILSVARRIVEGDH-----LSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGGAVAKRARAFDMDVLYTGPHRKEEKERDIGAKYVDLDTLLKNADFITI 205          
BLAST of FC932591 vs. ExPASy Swiss-Prot
Match: Y1879_STAES (Putative 2-hydroxyacid dehydrogenase SE_1879 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1879 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 46/173 (26.59%), Postives = 77/173 (44.51%), Query Frame = 2
Query:  173 LKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCDILII 682
            LK   +  +A++S     V  + +     ++++    AG N++D+   R++ I V N  +  +   ADL +GL++ + R I   D      L      +G       G ++ GK +GI+GLG IG  VAKR  AF   + Y    +K          Y ++  L  N D + I
Sbjct:   38 LKKGVEHADALVSLLSTSVDKDIIDSANNLKIIANYGAGFNNIDVEYARQQNIDVTNTPHASTNATADLTIGLILSVARRIVEGDH-----LSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGGAVAKRARAFDMDVLYTGPHRKEEKERDIGAKYVDLDTLLKNADFITI 205          
BLAST of FC932591 vs. ExPASy Swiss-Prot
Match: VANH_ENTFC (D-specific alpha-keto acid dehydrogenase OS=Enterococcus faecium GN=vanH PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 52/154 (33.77%), Postives = 75/154 (48.70%), Query Frame = 2
Query:  260 VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSED-VADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSY-PFYSNVCELAANCDILIICCGLTAEPHMI 715
            V+ + T S G NH+D    +R GITV N    +S D VAD  + L++  +RN+ +  R V++      +  G          L    VG+VG G IG  V +RL  FGC +   SR++   V+Y PF     EL  N DI+ +   L  + H I
Sbjct:   72 VKYISTRSIGCNHIDTTAAKRMGITVDNVA--YSPDSVADYTMMLILMAVRNVKSIVRSVEKHDFRLDSDRGKV--------LSDMTVGVVGTGQIGKAVIERLRGFGCKVLAYSRSRSIEVNYVPF----DELLQNSDIVTLHVPLNTDTHYI 211          
BLAST of FC932591 vs. ExPASy Swiss-Prot
Match: FDH_HORVU (Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 52/195 (26.67%), Postives = 94/195 (48.21%), Query Frame = 2
Query:  173 LKTHAQSVEAILSSGGAP--VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSK---LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK-----KPSVSYPFYSNVCELAANCDILIICCGLTAEPH-MINKQ 724
            L+ H + +  ++++   P  VTAE ++      L++T   G +H+D+      G+TVA      +  VA+  +  ++ LLRN      F+  +   +Q  +G+    GI  +   L GK VG VG G  G L+ +RL  F C++ Y+ R +     +  +   F  ++  +   CD+++I   LT +   M NK+
Sbjct:   82 LEKHIEDMHVLITTPFHPAYVTAEKIKKAKTPELLLTAGIGSDHIDLPAAAAAGLTVARVTGSNTVSVAEDELMRILILLRN------FLPGY---QQVVKGEWNVAGIAHRAYDLEGKTVGTVGAGRYGRLLLQRLKPFNCNLLYHDRLQINPELEKEIGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKE 267          
BLAST of FC932591 vs. ExPASy Swiss-Prot
Match: Y2178_STAAB (Putative 2-hydroxyacid dehydrogenase SAB2178 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB2178 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 47/177 (26.55%), Postives = 79/177 (44.63%), Query Frame = 2
Query:  188 QSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISY---NSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAEPH 709
            ++  A++S     V  + +     ++++    AG N++DI   R + I V N     +   ADL +GL++ + R I   D+     L      +G       G ++ GK +GI+GLG IGS VA+R  AF   + Y   N + +K       Y ++  L  N D + I      + H
Sbjct:   43 KNATALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAIARRIVEGDQ-----LSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMH 214          
BLAST of FC932591 vs. ExPASy Swiss-Prot
Match: Y2577_STAA8 (Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02577 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 47/177 (26.55%), Postives = 79/177 (44.63%), Query Frame = 2
Query:  188 QSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISY---NSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAEPH 709
            ++  A++S     V  + +     ++++    AG N++DI   R + I V N     +   ADL +GL++ + R I   D+     L      +G       G ++ GK +GI+GLG IGS VA+R  AF   + Y   N + +K       Y ++  L  N D + I      + H
Sbjct:   43 KNATALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQ-----LSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMH 214          
BLAST of FC932591 vs. ExPASy Swiss-Prot
Match: Y2305_STAAM (Putative 2-hydroxyacid dehydrogenase SAV2305 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2305 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 47/177 (26.55%), Postives = 79/177 (44.63%), Query Frame = 2
Query:  188 QSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISY---NSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAEPH 709
            ++  A++S     V  + +     ++++    AG N++DI   R + I V N     +   ADL +GL++ + R I   D+     L      +G       G ++ GK +GI+GLG IGS VA+R  AF   + Y   N + +K       Y ++  L  N D + I      + H
Sbjct:   43 KNATALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQ-----LSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMH 214          
BLAST of FC932591 vs. ExPASy Swiss-Prot
Match: Y2296_STAAC (Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=Staphylococcus aureus (strain COL) GN=SACOL2296 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 47/177 (26.55%), Postives = 79/177 (44.63%), Query Frame = 2
Query:  188 QSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISY---NSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAEPH 709
            ++  A++S     V  + +     ++++    AG N++DI   R + I V N     +   ADL +GL++ + R I   D+     L      +G       G ++ GK +GI+GLG IGS VA+R  AF   + Y   N + +K       Y ++  L  N D + I      + H
Sbjct:   43 KNATALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQ-----LSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMH 214          
BLAST of FC932591 vs. ExPASy Swiss-Prot
Match: Y2254_STAA3 (Putative 2-hydroxyacid dehydrogenase SAUSA300_2254 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_2254 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 47/177 (26.55%), Postives = 79/177 (44.63%), Query Frame = 2
Query:  188 QSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISY---NSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAEPH 709
            ++  A++S     V  + +     ++++    AG N++DI   R + I V N     +   ADL +GL++ + R I   D+     L      +G       G ++ GK +GI+GLG IGS VA+R  AF   + Y   N + +K       Y ++  L  N D + I      + H
Sbjct:   43 KNATALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQ-----LSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMH 214          
BLAST of FC932591 vs. ExPASy Swiss-Prot
Match: Y2224_STAAW (Putative 2-hydroxyacid dehydrogenase MW2224 OS=Staphylococcus aureus (strain MW2) GN=MW2224 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 47/177 (26.55%), Postives = 79/177 (44.63%), Query Frame = 2
Query:  188 QSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISY---NSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAEPH 709
            ++  A++S     V  + +     ++++    AG N++DI   R + I V N     +   ADL +GL++ + R I   D+     L      +G       G ++ GK +GI+GLG IGS VA+R  AF   + Y   N + +K       Y ++  L  N D + I      + H
Sbjct:   43 KNATALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQ-----LSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMH 214          
The following BLAST results are available for this feature:
BLAST of FC932591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
Y1888_STAEQ2.361e-1126.59Putative 2-hydroxyacid dehydrogenase SERP1888 OS=S... [more]
Y1879_STAES3.084e-1126.59Putative 2-hydroxyacid dehydrogenase SE_1879 OS=St... [more]
VANH_ENTFC3.084e-1133.77D-specific alpha-keto acid dehydrogenase OS=Entero... [more]
FDH_HORVU4.027e-1126.67Formate dehydrogenase, mitochondrial OS=Hordeum vu... [more]
Y2178_STAAB6.869e-1126.55Putative 2-hydroxyacid dehydrogenase SAB2178 OS=St... [more]
Y2577_STAA88.972e-1126.55Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577... [more]
Y2305_STAAM8.972e-1126.55Putative 2-hydroxyacid dehydrogenase SAV2305 OS=St... [more]
Y2296_STAAC8.972e-1126.55Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=... [more]
Y2254_STAA38.972e-1126.55Putative 2-hydroxyacid dehydrogenase SAUSA300_2254... [more]
Y2224_STAAW8.972e-1126.55Putative 2-hydroxyacid dehydrogenase MW2224 OS=Sta... [more]

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Properties
Property NameValue
Genbank descriptionC34210C07EF PostHarveN Citrus clementina cDNA clone C34210C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932591 ID=FC932591; Name=FC932591; organism=Citrus clementina; type=EST; length=728bp
GACGATGGAAGCATATCATGGGCATGGCAAAGAAAAAGAATCCCAAGACC
TCCCGAGAGTACTCCTGTTTAAGCCGCCACCGGACTTTCACCTCTTCGGA
GACGAATGCTTTTCCTCAAACAAGTTCAAGTTCTTGAAGGCGTGGGAATC
TCCTCTCCCACTTGACCAATTCTTGAAAACACATGCACAGTCAGTCGAAG
CCATTCTCTCATCGGGTGGCGCCCCGGTGACAGCCGAGACCTTGCGGCTG
ATGCCGGCCGTTCGATTGGTGATGACCACGAGCGCCGGACTCAACCACGT
CGACATCGCCGAGTGCCGACGCCGCGGCATCACTGTAGCTAATGCTGGAA
ACGTTTTCTCCGAAGATGTTGCTGATTTGGCCGTGGGGTTGCTTATTGAT
TTGTTAAGGAACATTTCTGCTTCTGATCGGTTTGTTAAACAATGGCTTCG
GCCTCGTCAAGCTGCTGAAGGGGACTGCTATTCTCTCGGCATCGGCAGTA
AGCTGGGAGGTAAGCGAGTTGGGATTGTTGGATTGGGAAGCATTGGCTCA
TTAGTTGCTAAAAGACTAGATGCCTTTGGATGCTCCATATCATACAACTC
AAGGACGAAGAAACCATCTGTCTCATACCCTTTCTATTCAAATGTCTGTG
AACTTGCAGCTAACTGCGATATCCTCATTATTTGCTGTGGATTAACTGCT
GAACCACACATGATCAATAAGCAGTCTT
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