FC932591

Overview
NameFC932591
Unique NameFC932591
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC932591 vs. ExPASy Swiss-Prot
Match: Y2196_STAAS (Putative 2-hydroxyacid dehydrogenase SAS2196 OS=Staphylococcus aureus (strain MSSA476) GN=SAS2196 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 47/177 (26.55%), Postives = 79/177 (44.63%), Query Frame = 2 
Query:  188 QSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISY---NSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAEPH 709
            ++  A++S     V  + +     ++++    AG N++DI   R + I V N     +   ADL +GL++ + R I   D+     L      +G       G ++ GK +GI+GLG IGS VA+R  AF   + Y   N + +K       Y ++  L  N D + I      + H
Sbjct:   43 KNATALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQ-----LSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMH 214
[Close]
BLAST of FC932591 vs. ExPASy Swiss-Prot
Match: Y2098_STAAN (Putative 2-hydroxyacid dehydrogenase SA2098 OS=Staphylococcus aureus (strain N315) GN=SA2098 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 47/177 (26.55%), Postives = 79/177 (44.63%), Query Frame = 2 
Query:  188 QSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISY---NSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAEPH 709
            ++  A++S     V  + +     ++++    AG N++DI   R + I V N     +   ADL +GL++ + R I   D+     L      +G       G ++ GK +GI+GLG IGS VA+R  AF   + Y   N + +K       Y ++  L  N D + I      + H
Sbjct:   43 KNATALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQ-----LSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMH 214
The following BLAST results are available for this feature:
BLAST of FC932591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
Y2196_STAAS8.972e-1126.55Putative 2-hydroxyacid dehydrogenase SAS2196 OS=St... [more]
Y2098_STAAN8.972e-1126.55Putative 2-hydroxyacid dehydrogenase SA2098 OS=Sta... [more]

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Properties
Property NameValue
Genbank descriptionC34210C07EF PostHarveN Citrus clementina cDNA clone C34210C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932591 ID=FC932591; Name=FC932591; organism=Citrus clementina; type=EST; length=728bp
GACGATGGAAGCATATCATGGGCATGGCAAAGAAAAAGAATCCCAAGACC
TCCCGAGAGTACTCCTGTTTAAGCCGCCACCGGACTTTCACCTCTTCGGA
GACGAATGCTTTTCCTCAAACAAGTTCAAGTTCTTGAAGGCGTGGGAATC
TCCTCTCCCACTTGACCAATTCTTGAAAACACATGCACAGTCAGTCGAAG
CCATTCTCTCATCGGGTGGCGCCCCGGTGACAGCCGAGACCTTGCGGCTG
ATGCCGGCCGTTCGATTGGTGATGACCACGAGCGCCGGACTCAACCACGT
CGACATCGCCGAGTGCCGACGCCGCGGCATCACTGTAGCTAATGCTGGAA
ACGTTTTCTCCGAAGATGTTGCTGATTTGGCCGTGGGGTTGCTTATTGAT
TTGTTAAGGAACATTTCTGCTTCTGATCGGTTTGTTAAACAATGGCTTCG
GCCTCGTCAAGCTGCTGAAGGGGACTGCTATTCTCTCGGCATCGGCAGTA
AGCTGGGAGGTAAGCGAGTTGGGATTGTTGGATTGGGAAGCATTGGCTCA
TTAGTTGCTAAAAGACTAGATGCCTTTGGATGCTCCATATCATACAACTC
AAGGACGAAGAAACCATCTGTCTCATACCCTTTCTATTCAAATGTCTGTG
AACTTGCAGCTAACTGCGATATCCTCATTATTTGCTGTGGATTAACTGCT
GAACCACACATGATCAATAAGCAGTCTT
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