FC932600

Overview
NameFC932600
Unique NameFC932600
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932600_ssr134 microsatellite FC932600_ssr134:134..145. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC932600 vs. ExPASy Swiss-Prot
Match: FL3H_MALDO (Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-13
Identity = 38/107 (35.51%), Postives = 63/107 (58.88%), Query Frame = 3
Query:  234 RETLETYSEEMRKVATSLVRSMAMALELEAQEISDAYQEGLYEVRTTLYPPCPEPERVIGITQHADYSGITLLLECGNIPGLQVLKDG--QWVTVIPVDGAIVANIG 548
            RE  + YS+E+  +A  L+  ++ A+ L+ + ++ A  +   +V    YP CP+P+  +G+ +H D   ITLLL+   + GLQ  +D    W+TV PV+GA V N+G
Sbjct:  155 REVTKKYSDELMGLACKLLGVLSEAMGLDTEALTKACVDMDQKVVVNFYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATRDDGKTWITVQPVEGAFVVNLG 260          

HSP 2 Score: 23.483 bits (49), Expect = 2.152e-13
Identity = 8/29 (27.59%), Postives = 14/29 (48.28%), Query Frame = 1
Query:   34 DWNDMIFLRTLPHEIRKLDLWPEHPPKFR 120
            DW +++   + P   R    WP+ P  +R
Sbjct:  127 DWREIVTYFSYPIRHRDYSRWPDKPEAWR 155          
BLAST of FC932600 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 43/126 (34.13%), Postives = 71/126 (56.35%), Query Frame = 3
Query:  240 TLETYSEEMRKVATSLVRSMAMALELEAQEISDAY---QEGL--YEVRTTLYPPCPEPERVIGITQHADYSGITLLLECGNIPGLQVLKDGQWVTVIPVDGAIVANIGHIMEVC*STKKRQ*MNRV 602
            T++ ++  + K+A  L+  +   L LE   +   +    +GL  +  + + YPPCP+PE + G+  H D  GI LL +   + GLQ+LKD +W+ V P+  +IV NIG  +EV  + K +  M+RV
Sbjct:  109 TMKEFALGLEKLAERLLDLLCENLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDTVSGLQLLKDEEWIDVPPMRHSIVVNIGDQLEVITNGKYKSVMHRV 234          
BLAST of FC932600 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 41/126 (32.54%), Postives = 69/126 (54.76%), Query Frame = 3
Query:  234 RETLETYSEEMRKVATSLVRSMAMALELEAQEISDAY---QEGLYEVRTTLYPPCPEPERVIGITQHADYSGITLLLECGNIPGLQVLKDGQWVTVIPVDGAIVANIGHIMEVC*STKKRQ*MNRV 602
            R  ++ ++ ++ K++  L+  +   L LE   +   +   +   +  + + YPPCP P+ V G+  H D  GI LL +   + GLQ+LKDG+WV V PV  +IV N+G  +EV  + K +   +RV
Sbjct:  111 RTLMKDFAGKIEKLSEELLDLLCENLGLEKGYLKKVFYGSKRPTFGTKVSNYPPCPNPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVDVPPVKHSIVVNLGDQLEVITNGKYKSVEHRV 236          
BLAST of FC932600 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13
Identity = 42/143 (29.37%), Postives = 76/143 (53.15%), Query Frame = 3
Query:  252 YSEEMRKVATSLVRSMAMALELEAQEISD---AYQEGLYEVRTTLYPPCPEPERVIGITQHADYSGITLLLECGNIPGLQVLKDGQWVTVIPVDGAIVANIGHIMEVC*STKKRQ*MNR---VKFTTKFSWLIGFRPINMQIM 662
            YS ++R +AT ++  +++ L LE   +       +E L + +   YP CP+PE  +G+  H D S +T +L    +PGLQ+  +G+WVT   V  +I+ +IG  +E+  + K +  ++R    K   + SW +   P   +I+
Sbjct:  178 YSVKLRSLATKILSVLSLGLGLEEGRLEKEVGGMEELLLQKKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPNSIIMHIGDTIEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKEKII 319          
BLAST of FC932600 vs. ExPASy Swiss-Prot
Match: FL3H_PETHY (Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Petunia hybrida GN=AN3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 39/103 (37.86%), Postives = 62/103 (60.19%), Query Frame = 3
Query:  246 ETYSEEMRKVATSLVRSMAMALELEAQEISDAYQEGLYEVRTTLYPPCPEPERVIGITQHADYSGITLLLECGNIPGLQVLKDG--QWVTVIPVDGAIVANIG 548
            + YSE++ ++A  L+  ++ A+ LE + ++ A  +   +V    YP CPEP+  +G+ +H D   ITLLL+   + GLQ  KD    W+TV PV+GA V N+G
Sbjct:  161 QKYSEKLMELACKLLDVLSEAMGLEKEALTKACVDMDQKVVVNFYPKCPEPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATKDNGKTWITVQPVEGAFVVNLG 262          
BLAST of FC932600 vs. ExPASy Swiss-Prot
Match: ACCO_DIOKA (1-aminocyclopropane-1-carboxylate oxidase OS=Diospyros kaki GN=DK-ACO1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 40/126 (31.75%), Postives = 69/126 (54.76%), Query Frame = 3
Query:  234 RETLETYSEEMRKVATSLVRSMAMALELEAQEISDAY---QEGLYEVRTTLYPPCPEPERVIGITQHADYSGITLLLECGNIPGLQVLKDGQWVTVIPVDGAIVANIGHIMEVC*STKKRQ*MNRV 602
            R  ++ ++E + K+A  L+  +   L LE   +  A+   +   +  +   YPPCP+ + + G+  H D  GI LL +   + GLQ+LKD QW+ V P+  +IV N+G  +EV  + K +  ++RV
Sbjct:  111 RRVMKDFAERLEKLAEYLLDLLCENLGLEKGYLKKAFYGTKGPNFGTKVANYPPCPKADLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMKHSIVINLGDQLEVITNGKYKSVLHRV 236          
BLAST of FC932600 vs. ExPASy Swiss-Prot
Match: FL3H_ARATH (Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabidopsis thaliana GN=F3H PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 37/103 (35.92%), Postives = 61/103 (59.22%), Query Frame = 3
Query:  246 ETYSEEMRKVATSLVRSMAMALELEAQEISDAYQEGLYEVRTTLYPPCPEPERVIGITQHADYSGITLLLECGNIPGLQVLKDG--QWVTVIPVDGAIVANIG 548
            E YSE +  +A  L+  ++ A+ LE + +++A  +   ++    YP CP+P+  +G+ +H D   ITLLL+   + GLQ  +D    W+TV PV+GA V N+G
Sbjct:  158 EEYSERLMSLACKLLEVLSEAMGLEKESLTNACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATRDNGKTWITVQPVEGAFVVNLG 259          
BLAST of FC932600 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 38/126 (30.16%), Postives = 68/126 (53.97%), Query Frame = 3
Query:  234 RETLETYSEEMRKVATSLVRSMAMALELEAQEISDAY---QEGLYEVRTTLYPPCPEPERVIGITQHADYSGITLLLECGNIPGLQVLKDGQWVTVIPVDGAIVANIGHIMEVC*STKKRQ*MNRV 602
            R  ++ + + +  +A  L+  +   L LE   +   +   +   +  + + YP CP+PE + G+  H D  GI LL +   + GLQ+LKDG W+ V P++ +IV N+G  +EV  + + +  M+RV
Sbjct:  114 RTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPACPKPEMIKGLRAHTDAGGIILLFQDDKVTGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGRYKSMMHRV 239          
BLAST of FC932600 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 38/110 (34.55%), Postives = 64/110 (58.18%), Query Frame = 3
Query:  234 RETLETYSEEMRKVATSLVRSMAMALELEAQEISDAYQEGLYEVRTTLYPPCPEPERVIGITQHADYSGITLLLECGNIPGLQVLKDGQWVTVIPVDGAIVANIGHIMEV 563
            R+ +  YS+++  +   L   ++ AL LE   ++D        + +  YPPCPEP+  +G +QH+D S +T+LL    I GLQV ++G W  V  V GA++ NIG ++++
Sbjct:  178 RDIMMEYSKQVMNLGKFLFELLSEALGLEPNHLNDMDCSKGLLMLSHYYPPCPEPDLTLGTSQHSDNSFLTVLLP-DQIEGLQVRREGHWFDVPHVSGALIINIGDLLQL 286          
BLAST of FC932600 vs. ExPASy Swiss-Prot
Match: FL3H_MATIN (Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Matthiola incana GN=FHT PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 37/103 (35.92%), Postives = 62/103 (60.19%), Query Frame = 3
Query:  246 ETYSEEMRKVATSLVRSMAMALELEAQEISDAYQEGLYEVRTTLYPPCPEPERVIGITQHADYSGITLLLECGNIPGLQVLKD--GQWVTVIPVDGAIVANIG 548
            E YSE++  +A  L+  ++ A+ LE + +++A  +   ++    YP CP+P+  +G+ +H D   ITLLL+   + GLQ  +D    W+TV PV+GA V N+G
Sbjct:  157 EEYSEKLMGLACKLLEVLSEAMGLEKESLTNACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATRDDGNTWITVQPVEGAFVVNLG 258          
The following BLAST results are available for this feature:
BLAST of FC932600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
FL3H_MALDO2.152e-1335.51Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus d... [more]
ACCO_DENCR2.972e-1334.131-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
ACCO1_ARATH2.972e-1332.541-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]
LDOX_VITVI5.070e-1329.37Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
FL3H_PETHY8.648e-1337.86Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)... [more]
ACCO_DIOKA8.648e-1331.751-aminocyclopropane-1-carboxylate oxidase OS=Diosp... [more]
FL3H_ARATH1.475e-1235.92Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabido... [more]
ACCO1_BRAJU1.475e-1230.161-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
ACCH3_ARATH1.475e-1234.551-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
FL3H_MATIN1.927e-1235.92Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)... [more]

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Properties
Property NameValue
Genbank descriptionC34210D04EF PostHarveN Citrus clementina cDNA clone C34210D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932600 ID=FC932600; Name=FC932600; organism=Citrus clementina; type=EST; length=687bp
GAAAGCATTTGTCATCTCAGTCGACAAAAACTTGATTGGAATGACATGAT
CTTCCTCAGAACTCTGCCCCATGAAATCAGGAAGTTAGATTTATGGCCTG
AACACCCCCCAAAATTCAGGTTGATAATAATTTATAATAATAATAATCTT
CAGAATTAACTCATACTGAAGTCAAGACTTTTCTAGAGTGATGTCTTCTA
ATATGCTTATTGACAAAAGACATTCTGTGTATTAGAGAGACTTTGGAGAC
TTATTCTGAAGAGATGAGGAAAGTTGCCACTTCTTTAGTGAGGTCCATGG
CTATGGCACTTGAGCTTGAGGCTCAAGAAATCTCTGATGCTTACCAAGAA
GGACTGTATGAAGTGAGGACGACTTTGTATCCTCCTTGTCCTGAACCTGA
GCGGGTCATTGGGATTACACAACATGCTGATTACTCTGGGATTACTCTCT
TGCTCGAGTGTGGCAACATACCAGGGTTACAAGTCCTAAAGGATGGACAA
TGGGTCACCGTTATACCTGTAGATGGTGCAATTGTGGCAAACATCGGCCA
CATCATGGAGGTATGTTAAAGCACAAAAAAGAGGCAGTAAATGAATCGTG
TTAAGTTTACTACCAAGTTCTCTTGGTTAATAGGTTTTAGACCAATTAAT
ATGCAGATAATGAGCAATGGGATTTACAAGCACCAGA
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