FC932601

Overview
NameFC932601
Unique NameFC932601
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14295 contig Ccv1_Contig14295:129..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_ANAVT (50S ribosomal protein L15 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplO PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.582e-28
Identity = 73/155 (47.10%), Postives = 93/155 (60.00%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTVL 629
            RLN++ PQ GS          I+AGQG S G GMRGQKSRSG G R GFEGGQ PLYRRIPKL+G           Y  +N++ +  A      EV+LE+L+  G++       K PLK+LG+G+L   LN KA AF+  A+ K+EAAG +  VL
Sbjct:    2 RLNDVKPQKGSKKRRRRVGRGISAGQGASAGLGMRGQKSRSGSGTRPGFEGGQQPLYRRIPKLKGFP---VVNRKIYTTINVEKL--ADLPANTEVTLESLRASGILTAV----KGPLKVLGNGDLGVALNVKAAAFTGQARSKIEAAGGSCEVL 147          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_SYNPW (50S ribosomal protein L15 OS=Synechococcus sp. (strain WH7803) GN=rplO PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.121e-27
Identity = 75/152 (49.34%), Postives = 92/152 (60.53%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLE-GDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCT 617
            RL +L    G+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L       + ++ A   L+ G  VSL++L K G++       K PLKILG+GEL TKL  +A AF+ SA+ K+EAAG T
Sbjct:    4 RLESLKSNKGARRRKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLVNPKQFTVVNVSALNDLKAGSTVSLDSLVKDGIVT----SPKHPLKILGNGELKTKLTVQAAAFTASARTKIEAAGGT 145          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_PROM2 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplO PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.464e-27
Identity = 72/148 (48.65%), Postives = 92/148 (62.16%), Query Frame = 3
Query:  168 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAG 611
            LN L    GS          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            +  +NL+ +    F + D V++++L KKGLI     + K PLKILG+G+++ KL  +A AF+  AK+K+EAAG
Sbjct:    5 LNTLKSNSGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNFSIINLEKLN--DFKDNDTVNIDSLVKKGLI----FKPKFPLKILGNGKINVKLKVQAHAFTKVAKQKIEAAG 143          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_CYAP8 (50S ribosomal protein L15 OS=Cyanothece sp. (strain PCC 8801) GN=rplO PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.912e-27
Identity = 76/158 (48.10%), Postives = 98/158 (62.03%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGL--PK-YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTVL 629
            R++ + P+ GS          I+AGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRRIPKL+      H  L  PK Y  +N+  +E+       EV+LE+L ++G+I  +      PLK+LGDG L+  L  KA AFS SA+EK+ A G +  VL
Sbjct:    2 RIHEVTPKEGSTKRRRRVGRGISAGQGASCGFGMRGQKSRSGTGTKAGFEGGQMPLYRRIPKLK------HFPLVNPKHYTIINVGKLES--LEPNTEVTLESLMEQGIITTNDG----PLKVLGDGTLTKALTVKAAAFSKSAQEKIAATGGSWEVL 147          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_PROMM (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplO PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.497e-27
Identity = 73/161 (45.34%), Postives = 94/161 (58.39%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKD---IEAAGFLE---GDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTVL 629
            RL++L    G+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            +  VN K+   +  A   E   G  ++L+TL K G++       K PLK+LG+GEL  KL  +A AF+ +A+ K+EAAG T  +L
Sbjct:    5 RLDSLKANVGARRRKMRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK-----------HFTTVNSKEFTVVNVAALNELKAGSTINLDTLVKNGVVT----SPKYPLKVLGNGELKVKLTIQAAAFTATARSKIEAAGGTCEIL 150          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_PROM0 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplO PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.497e-27
Identity = 73/148 (49.32%), Postives = 91/148 (61.49%), Query Frame = 3
Query:  168 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAG 611
            LN L    GS          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            +  +NL+ +    F + D V+L++L KKGLI     + K PLKILG+G+L+ KL  +A AF+  AK+K+E AG
Sbjct:    5 LNTLKSNSGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNFSIINLEKLN--DFKDNDTVNLDSLVKKGLI----FKPKFPLKILGNGKLNVKLKVQAHAFTKVAKQKIEDAG 143          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_NOSP7 (50S ribosomal protein L15 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplO PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.259e-27
Identity = 73/155 (47.10%), Postives = 94/155 (60.65%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTVL 629
            RL+++ PQ GS          I+AGQG S G GMRGQKSRSG G R GFEGGQ PLYRR+PKL+G           Y  +N++ +  A      EV+L +LK  G++       K PLKILG+GELST L  +A AF+ +A+ K+EAAG +  VL
Sbjct:    2 RLHDVKPQKGSKKRKKRVARGISAGQGASAGLGMRGQKSRSGSGTRPGFEGGQQPLYRRLPKLKGFP---IVNQKIYTTINVEKL--ASLPANTEVTLASLKAAGILTAV----KGPLKILGNGELSTPLKVQAAAFTGTARSKIEAAGGSCEVL 147          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_SYNJB (50S ribosomal protein L15 OS=Synechococcus sp. GN=rplO PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.563e-27
Identity = 71/155 (45.81%), Postives = 94/155 (60.65%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTVL 629
            RL ++ PQ GS          ++AGQG SCG GMRGQK+R G   R GFEGGQ PLYRR+PKL+      +    +Y  VNL+ +  A    G EVSLE+L ++G++  +      PLKILGDGE+S  L  +A A + SAK K+EAAG  + +L
Sbjct:    2 RLEDIRPQAGSTRRRRRLGRGVSAGQGASCGKGMRGQKARKGGSTRPGFEGGQTPLYRRLPKLKHFP--RYRRRLEYTLVNLRAL--ADLPAGSEVSLESLMERGIVTTNDG----PLKILGDGEVSVPLTIRAAAITASAKVKVEAAGGRVEIL 148          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_PROMP (50S ribosomal protein L15 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplO PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.563e-27
Identity = 75/155 (48.39%), Postives = 93/155 (60.00%), Query Frame = 3
Query:  168 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETL-KKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTVL 629
            LN L    GS          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            +  VNL  +  + F E + V++++L KKK L  P     K PLKILG+GE+  KL  +A AF+  AKEK+EAAG +  ++
Sbjct:    5 LNTLKSNTGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNFSIVNLSKL--SEFKESEVVNIDSLVKKKLLFKP-----KFPLKILGNGEVKVKLKVQAHAFTKVAKEKIEAAGGSCEII 149          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_PROM9 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplO1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.265e-27
Identity = 73/154 (47.40%), Postives = 94/154 (61.04%), Query Frame = 3
Query:  168 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTVL 629
            LN L    GS          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            +  +NL  ++   F + D V+L++L KKGLI     + K PLKILG+G+++ KL  +A AF+  AK+K+E AG +  +L
Sbjct:    5 LNTLKSNSGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNFSIINLDKLK--DFNDNDTVNLDSLVKKGLI----FKPKFPLKILGNGKVNVKLTVQAHAFTKVAKQKIEDAGGSCELL 149          
The following BLAST results are available for this feature:
BLAST of FC932601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_ANAVT8.582e-2847.1050S ribosomal protein L15 OS=Anabaena variabilis (... [more]
RL15_SYNPW1.121e-2749.3450S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_PROM21.464e-2748.6550S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_CYAP81.912e-2748.1050S ribosomal protein L15 OS=Cyanothece sp. (strai... [more]
RL15_PROMM2.497e-2745.3450S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_PROM02.497e-2749.3250S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_NOSP74.259e-2747.1050S ribosomal protein L15 OS=Nostoc punctiforme (s... [more]
RL15_SYNJB5.563e-2745.8150S ribosomal protein L15 OS=Synechococcus sp. GN=... [more]
RL15_PROMP5.563e-2748.3950S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_PROM97.265e-2747.4050S ribosomal protein L15 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionC34210D05EF PostHarveN Citrus clementina cDNA clone C34210D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932601 ID=FC932601; Name=FC932601; organism=Citrus clementina; type=EST; length=754bp
AGGGCAATGTCAAAACCCTAATGCCAAAACCCCCATCAGGCCTTTGCGTC
CCTCTCAAAGTCCAACAAAGAAATAAACCACCCCAGCTCACTGTCTTAAA
CCAAGCTGCTTCGGCTTCTGCTTCAGCAACTGTTGGTTCGGGTCCCGTTA
CGAATGTACGGTTCCGGTTAAATAACCTGGGCCCACAACCGGGTTCGAGA
AAGAGAGGGAAGAGAAAGGGGAGAGGAATAGCAGCTGGGCAAGGTAACAG
CTGTGGGTTTGGAATGAGAGGTCAGAAATCGAGGTCTGGTCCTGGCGTTA
GAAAGGGTTTTGAAGGTGGTCAAATGCCTCTTTATCGTCGAATTCCTAAG
CTCCGTGGGATTGCCGGAGGTATGCATGCTGGGTTACCTAAGTATGTCCC
TGTTAACTTGAAAGACATAGAAGCAGCTGGTTTTCTAGAGGGGGATGAAG
TCTCACTAGAGACTTTGAAGAAGAAGGGCTTGATCAATCCCTCAGGAAGA
GAAAGGAAACTGCCTTTAAAGATTCTTGGTGATGGAGAATTAAGCACGAA
GCTGAACTTCAAGGCTCGTGCCTTCTCTACATCAGCAAAGGAGAAGCTTG
AAGCTGCAGGCTGTACCCTCACTGTCTTACCTGGCCGAAAGAGGTGGGTG
AAACCATCAGTAGCTAAGAACCTTGCACGAGCTGAAGAATACTTCGCCAA
GAAGAGAGCTGCTGCAGCTGCATCCGATTCACTTCAGCTTGAACACTTGG
NTTT
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