FC932601

Overview
NameFC932601
Unique NameFC932601
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14295 contig Ccv1_Contig14295:129..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_THEEB (50S ribosomal protein L15 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplO PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.881e-25
Identity = 71/152 (46.71%), Postives = 89/152 (58.55%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAG 611
            R  +L PQ GS          IAAGQG S GFGMRGQKSRSG   R GFEGGQ PLYRR+PKL+      H  L K   Y  +N+  +          V++++L + G++  +    K PLK+LGDGEL+ KL   A AFS SA+ K+EAAG
Sbjct:    2 RFQDLHPQAGSRRRKRRIGRGIAAGQGASGGFGMRGQKSRSGRPTRPGFEGGQNPLYRRLPKLK------HFPLVKRKVYTTINVGRLNT--LPANSVVTVQSLLEAGILTTA----KYPLKVLGDGELNVKLEVHAAAFSGSARSKIEAAG 141          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_TRIEI (50S ribosomal protein L15 OS=Trichodesmium erythraeum (strain IMS101) GN=rplO PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.160e-24
Identity = 69/149 (46.31%), Postives = 86/149 (57.72%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAG 611
            RL +  P+ GS          I+AGQG SCG GMRGQKSRSG   R GFEGGQ PLYRR+PKL+G          KY  +N+  +  +      EV+L +L K G+I         PLKILGDG+L+  L   A AF+ SA+ K+EAAG
Sbjct:    2 RLKDAIPKKGSQQRGRRVGRGISAGQGASCGKGMRGQKSRSGGSTRPGFEGGQNPLYRRLPKLKGFP---MVNRKKYTIINVSKL--SSLPANTEVTLASLIKVGIITTDDG----PLKILGDGDLNIPLKVYAAAFTASARSKIEAAG 141          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_GLOVI (50S ribosomal protein L15 OS=Gloeobacter violaceus GN=rplO PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.978e-24
Identity = 69/154 (44.81%), Postives = 86/154 (55.84%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTV 626
            RL +  PQ GS           +AGQG + G GMRGQK RSG GVR GFEGGQ+PLY R+PKL+G           Y  VNLK +         EV++ETL   G++  +      PL++LGDGE    L   A  F+ SA+EK+EAAG T TV
Sbjct:    5 RLEDAVPQSGSRHRKLRVGRGHSAGQGKTSGRGMRGQKCRSGGGVRPGFEGGQIPLYMRLPKLKGFE---LVNPSSYTIVNLKQLR--DLPADSEVNIETLLDAGILTATSG----PLRVLGDGEAHVALQITAAYFTASAREKIEAAGGTCTV 149          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_ACAM1 (50S ribosomal protein L15 OS=Acaryochloris marina (strain MBIC 11017) GN=rplO PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.978e-24
Identity = 70/152 (46.05%), Postives = 90/152 (59.21%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVN---LKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAG 611
            RLN+  P+ GS          IAAGQG SCGFGMRGQKSRSG   R GFEGGQ PLYRR+PKL+           +Y  +N   L +++A       +V+LE+L  +G+I  +      PLK+LGDGEL+  LN +A A + SA  K+E AG
Sbjct:    2 RLNDPKPKTGSQHRRRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQNPLYRRVPKLKHFT---LINQKQYTTINVGKLNELKAK-----SDVTLESLMAEGIITSNDG----PLKVLGDGELTVALNVQAAAATQSAIAKVEGAG 141          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_SYNY3 (50S ribosomal protein L15 OS=Synechocystis sp. (strain PCC 6803) GN=rplO PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.819e-24
Identity = 67/151 (44.37%), Postives = 88/151 (58.28%), Query Frame = 3
Query:  168 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDI---EAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAG 611
            L+ L P+ G+          IAAGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRR+PKL+          P Y P +   +   + AG      V+LE+L + G++  +      PLK+LG+GEL+  L   A   S +A+ K+EAAG
Sbjct:    3 LSELSPKDGAKKRRRRVGRGIAAGQGASCGFGMRGQKSRSGTGTKAGFEGGQMPLYRRLPKLK--------HFPLYNPKHFTVVNVGKLAGLAPNTVVTLESLMEAGIVTSNDG----PLKVLGNGELAVALTVHAPC-SKAAQAKIEAAG 140          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_RUBXD (50S ribosomal protein L15 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplO PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.819e-24
Identity = 67/157 (42.68%), Postives = 91/157 (57.96%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHA-GLPK-YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTVL 629
            RLN L P PGS            +G G + G G +G K+RSG      +EGGQMPL RR+P+L+G A G H    PK Y PVN+ ++ A   +EGD + L+ L+  GLI    ++    +KILGDGE+   +  +A AFS +A+EK+EAAG    VL
Sbjct:    2 RLNELSPPPGSRRARKRVGRGEGSGYGKTSGRGQKGAKARSGTKAYTTYEGGQMPLQRRLPRLKGEARGRHTPAHPKVYDPVNVGELAA---VEGDTIGLDELRAAGLIR---KKADTLVKILGDGEIDRPVTVRAHAFSRAAREKIEAAGGRAEVL 152          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_ANOFW (50S ribosomal protein L15 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rplO PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.282e-23
Identity = 67/155 (43.23%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTVL 629
            +L+ L P PGS          I +G G + G G +GQ +RSG GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL+ +    F +G EV+ E L + G+++    + K  +K+LGDGEL+ KL  KA  FS SAKE +EAAG T  V+
Sbjct:    2 KLHELQPAPGSRKERNRVGRGIGSGNGKTSGKGHKGQNARSGGGVRIGFEGGQTPLFRRLPK----RGFTNIHRKEYAIVNLEALNR--FEDGTEVTPELLLETGVVS----KLKAGIKVLGDGELTKKLTVKAHKFSASAKEAIEAAGGTTEVI 146          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_BACSU (50S ribosomal protein L15 OS=Bacillus subtilis GN=rplO PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.857e-23
Identity = 67/155 (43.23%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTVL 629
            +L+ L P  GS          I +G G + G G +GQ +RSG GVR GFEGGQMPL++R+PK     G  +    +Y  VNL  +   GF EG EV+ E L + G+I+    +    +KILG+G+L  KL  KA  FS SAKE +EAAG T  V+
Sbjct:    2 KLHELKPSEGSRKTRNRVGRGIGSGNGKTAGKGHKGQNARSGGGVRPGFEGGQMPLFQRLPK----RGFTNINRKEYAVVNLDKLN--GFAEGTEVTPELLLETGVIS----KLNAGVKILGNGKLEKKLTVKANKFSASAKEAVEAAGGTAEVI 146          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_GEOTN (50S ribosomal protein L15 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplO PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.873e-23
Identity = 66/149 (44.30%), Postives = 87/149 (58.39%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAG 611
            +L+ L P PGS          I +G G + G G +GQK+RSG GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+ E L +KG+I+    + K  +KILG G++  KL  KA  FS SAKE +EAAG
Sbjct:    2 KLHELQPAPGSRKKAVRVGRGIGSGNGKTAGRGHKGQKARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINRKEYAVVNLDRLNI--FEDGTEVTPELLLEKGVIS----KLKSGVKILGKGQIEKKLTVKAHKFSASAKEAIEAAG 140          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_BACLD (50S ribosomal protein L15 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplO PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23
Identity = 66/155 (42.58%), Postives = 90/155 (58.06%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTVL 629
            +L+ L P  GS          I +G G + G G +GQ +RSG GVR GFEGGQMPL++R+PK     G  +    ++  VNL  + +  F EG EV+ E L + G+I+    + K  +KILGDG+L  KL  KA  FS SAK+ +EAAG T  V+
Sbjct:    2 KLHELKPAEGSRKTRNRVGRGIGSGNGKTAGKGHKGQNARSGGGVRPGFEGGQMPLFQRLPK----RGFTNINRKEFAVVNLDKLNS--FAEGTEVTPELLLETGVIS----KLKSGVKILGDGKLEKKLTVKANKFSASAKQAIEAAGGTAEVI 146          
The following BLAST results are available for this feature:
BLAST of FC932601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_THEEB8.881e-2546.7150S ribosomal protein L15 OS=Thermosynechococcus e... [more]
RL15_TRIEI1.160e-2446.3150S ribosomal protein L15 OS=Trichodesmium erythra... [more]
RL15_GLOVI1.978e-2444.8150S ribosomal protein L15 OS=Gloeobacter violaceus... [more]
RL15_ACAM11.978e-2446.0550S ribosomal protein L15 OS=Acaryochloris marina ... [more]
RL15_SYNY39.819e-2444.3750S ribosomal protein L15 OS=Synechocystis sp. (st... [more]
RL15_RUBXD9.819e-2442.6850S ribosomal protein L15 OS=Rubrobacter xylanophi... [more]
RL15_ANOFW1.282e-2343.2350S ribosomal protein L15 OS=Anoxybacillus flavith... [more]
RL15_BACSU2.857e-2343.2350S ribosomal protein L15 OS=Bacillus subtilis GN=... [more]
RL15_GEOTN4.873e-2344.3050S ribosomal protein L15 OS=Geobacillus thermoden... [more]
RL15_BACLD6.364e-2342.5850S ribosomal protein L15 OS=Bacillus licheniformi... [more]

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Properties
Property NameValue
Genbank descriptionC34210D05EF PostHarveN Citrus clementina cDNA clone C34210D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932601 ID=FC932601; Name=FC932601; organism=Citrus clementina; type=EST; length=754bp
AGGGCAATGTCAAAACCCTAATGCCAAAACCCCCATCAGGCCTTTGCGTC
CCTCTCAAAGTCCAACAAAGAAATAAACCACCCCAGCTCACTGTCTTAAA
CCAAGCTGCTTCGGCTTCTGCTTCAGCAACTGTTGGTTCGGGTCCCGTTA
CGAATGTACGGTTCCGGTTAAATAACCTGGGCCCACAACCGGGTTCGAGA
AAGAGAGGGAAGAGAAAGGGGAGAGGAATAGCAGCTGGGCAAGGTAACAG
CTGTGGGTTTGGAATGAGAGGTCAGAAATCGAGGTCTGGTCCTGGCGTTA
GAAAGGGTTTTGAAGGTGGTCAAATGCCTCTTTATCGTCGAATTCCTAAG
CTCCGTGGGATTGCCGGAGGTATGCATGCTGGGTTACCTAAGTATGTCCC
TGTTAACTTGAAAGACATAGAAGCAGCTGGTTTTCTAGAGGGGGATGAAG
TCTCACTAGAGACTTTGAAGAAGAAGGGCTTGATCAATCCCTCAGGAAGA
GAAAGGAAACTGCCTTTAAAGATTCTTGGTGATGGAGAATTAAGCACGAA
GCTGAACTTCAAGGCTCGTGCCTTCTCTACATCAGCAAAGGAGAAGCTTG
AAGCTGCAGGCTGTACCCTCACTGTCTTACCTGGCCGAAAGAGGTGGGTG
AAACCATCAGTAGCTAAGAACCTTGCACGAGCTGAAGAATACTTCGCCAA
GAAGAGAGCTGCTGCAGCTGCATCCGATTCACTTCAGCTTGAACACTTGG
NTTT
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