FC932601

Overview
NameFC932601
Unique NameFC932601
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14295 contig Ccv1_Contig14295:129..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_RICB8 (50S ribosomal protein L15 OS=Rickettsia bellii (strain OSU 85-389) GN=rplO PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.135e-14
Identity = 56/153 (36.60%), Postives = 83/153 (54.25%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLE----GDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAG 611
            +LN L    G+          I +G+G + G G++GQKSR+G  + KGFEGGQ P+ +R+PK     G       KY  +N+ +IEAA   E     D ++ E L + GLIN S ++    L I  D + +  L+FK  ++S+ AKE +E AG
Sbjct:    2 KLNELYNNIGAKKNKKRVARGIGSGKGKTAGRGVKGQKSRAGVAI-KGFEGGQTPMIKRLPK----RGFNCISSKKYNVINIYNIEAAIAEERLNANDVITKEKLIEIGLINKSNKKLVKLLSICSD-DFNYPLSFKLDSYSSKAKEIVEKAG 148          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_LEGPL (50S ribosomal protein L15 OS=Legionella pneumophila (strain Lens) GN=rplO PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.135e-14
Identity = 50/149 (33.56%), Postives = 79/149 (53.02%), Query Frame = 3
Query:  168 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYV-PVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAG 611
            LN L P PGS          I +G G +CG G +GQKSR+G   +  FEGGQMP+ RR+PK+     G  + + + +  V+L ++     L  + + L  L+K GLIN S ++    +K++  GEL+  +  K    +  A+  +E+ G
Sbjct:    3 LNTLSPDPGSRPSRRRVGRGIGSGLGKTCGKGHKGQKSRAGGYHKINFEGGQMPIQRRLPKM-----GFKSRVGRTIDEVSLGELAK---LNDEVIDLVALRKAGLINNSIKD----VKVILSGELTAAIKLKGLRVTKGARSAIESLG 139          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_LEGPH (50S ribosomal protein L15 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=rplO PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.135e-14
Identity = 50/149 (33.56%), Postives = 79/149 (53.02%), Query Frame = 3
Query:  168 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYV-PVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAG 611
            LN L P PGS          I +G G +CG G +GQKSR+G   +  FEGGQMP+ RR+PK+     G  + + + +  V+L ++     L  + + L  L+K GLIN S ++    +K++  GEL+  +  K    +  A+  +E+ G
Sbjct:    3 LNTLSPDPGSRPSRRRVGRGIGSGLGKTCGKGHKGQKSRAGGYHKINFEGGQMPIQRRLPKM-----GFKSRVGRTIDEVSLGELAK---LNDEVIDLVALRKAGLINNSIKD----VKVILSGELTAAIKLKGLRVTKGARSAIESLG 139          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_LEGPA (50S ribosomal protein L15 OS=Legionella pneumophila (strain Paris) GN=rplO PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.135e-14
Identity = 50/149 (33.56%), Postives = 79/149 (53.02%), Query Frame = 3
Query:  168 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYV-PVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAG 611
            LN L P PGS          I +G G +CG G +GQKSR+G   +  FEGGQMP+ RR+PK+     G  + + + +  V+L ++     L  + + L  L+K GLIN S ++    +K++  GEL+  +  K    +  A+  +E+ G
Sbjct:    3 LNTLSPDPGSRPSRRRVGRGIGSGLGKTCGKGHKGQKSRAGGYHKINFEGGQMPIQRRLPKM-----GFKSRVGRTIDEVSLGELAK---LNDEVIDLVALRKAGLINNSIKD----VKVILSGELTAAIKLKGLRVTKGARSAIESLG 139          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_BACFR (50S ribosomal protein L15 OS=Bacteroides fragilis GN=rplO PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.135e-14
Identity = 55/149 (36.91%), Postives = 79/149 (53.02%), Query Frame = 3
Query:  168 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIE-AAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAG 611
            L+NL P  GS            +G G +   G +G KSRSG   + GFEGGQMPL RR+PK     G  +    +Y  +NL+ I+  A   + ++V +    + G I+ S       +K+LG+G L+ KL+ +A AFS SA   +EAAG
Sbjct:    3 LSNLKPAEGSTKTRKRIGRGPGSGLGGTSTRGHKGAKSRSGYSKKIGFEGGQMPLQRRVPKF----GFKNINRIEYKAINLETIQKLAEAKKLEKVGVNDFIEAGFISSSQL-----VKVLGNGTLTAKLSVEAHAFSKSAVAAIEAAG 142          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_BACFN (50S ribosomal protein L15 OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=rplO PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.135e-14
Identity = 55/149 (36.91%), Postives = 79/149 (53.02%), Query Frame = 3
Query:  168 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIE-AAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAG 611
            L+NL P  GS            +G G +   G +G KSRSG   + GFEGGQMPL RR+PK     G  +    +Y  +NL+ I+  A   + ++V +    + G I+ S       +K+LG+G L+ KL+ +A AFS SA   +EAAG
Sbjct:    3 LSNLKPAEGSTKTRKRIGRGPGSGLGGTSTRGHKGAKSRSGYSKKIGFEGGQMPLQRRVPKF----GFKNINRIEYKAINLETIQKLAEAKKLEKVGVNDFIEAGFISSSQL-----VKVLGNGTLTAKLSVEAHAFSKSAVAAIEAAG 142          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_XANP2 (50S ribosomal protein L15 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplO PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.400e-14
Identity = 58/158 (36.71%), Postives = 86/158 (54.43%), Query Frame = 3
Query:  168 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEA---AGFLE-GDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTVL 629
            L ++   PG+          I +G+G + G G++GQK+R+G  + KGFEGGQMPL+RR+PK RG           Y  V+L  I+A   AG L+ G  V+   L   G++    R  K  +++LG GELS K+  +    + SA   +E AG ++TVL
Sbjct:    3 LEDIRDNPGARKKRMRVGRGIGSGKGKTAGRGVKGQKARTGVAI-KGFEGGQMPLHRRLPK-RGFHNIFRL---DYNEVSLGKIQAAVEAGKLDAGQPVTEAALVAAGVL----RRAKDGVRVLGTGELSAKVTLEVAYATKSAVAAVEKAGGSVTVL 151          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_SOLUE (50S ribosomal protein L15 OS=Solibacter usitatus (strain Ellin6076) GN=rplO PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.400e-14
Identity = 51/154 (33.12%), Postives = 83/154 (53.90%), Query Frame = 3
Query:  168 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTVL 629
            L+ + P  G           + +G G +   G +GQ + +G   ++GFEGGQMPL+RR+PK     G  +    ++  VNL  +E    LEG+  +++T+ + GLIN    +    +K+LG G L+ K+  +A  FS SA EK++ AG T  ++
Sbjct:    3 LSGIKPPKGQVKTKKRIGRGMGSGHGKTATRGSKGQHAGTGFSQKRGFEGGQMPLHRRLPK----RGFKNIFKKQFAIVNLGRLEK---LEGNSFTIDTMLQLGLIN----KVYDGVKVLGTGVLTRKITVEAHHFSKSALEKIQQAGGTAQMI 145          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_SACEN (50S ribosomal protein L15 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=rplO PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.400e-14
Identity = 57/156 (36.54%), Postives = 82/156 (52.56%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGEL-STKLNFKARAFSTSAKEKLEAAGCTLTVL 629
            ++++L P PGS              +G + G G +G K+R     R  FEGGQMP++ R+PKLRG          ++  VN+  + AA F +G  V ++ L   GL N         +KILGDG+L   KL   A AF+ SA+EK+ AAG ++T L
Sbjct:    4 KIHDLRPAPGSKRDKIRVGRG-EGSKGKTAGRGTKGTKARKNVSPR--FEGGQMPIHMRLPKLRGFKNRFRT---EFHGVNVGKL-AAAFPQGGTVGIDELISAGLANKGEL-----VKILGDGDLEGVKLEVTAHAFTGSAQEKITAAGGSVTKL 147          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_PSEE4 (50S ribosomal protein L15 OS=Pseudomonas entomophila (strain L48) GN=rplO PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.400e-14
Identity = 50/149 (33.56%), Postives = 77/149 (51.68%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAG 611
            +LN+L P PGS          I +G G + G G +GQ SRSG  +  GFEGGQ PL+RR+PK     G +         V L ++     +EGD +++++LK   +I     +    +KI+  GE++  +  K  A +  A+  +EAAG
Sbjct:    2 KLNDLSPAPGSRREKHRPGRGIGSGLGKTGGRGHKGQTSRSGGSIAPGFEGGQQPLHRRLPKF----GFVSLKAMDRAEVRLSELAK---VEGDLITVQSLKDANVIG----QHVQRVKIMLSGEVTRAVTLKGIAVTKGARAAIEAAG 139          
The following BLAST results are available for this feature:
BLAST of FC932601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_RICB84.135e-1436.6050S ribosomal protein L15 OS=Rickettsia bellii (st... [more]
RL15_LEGPL4.135e-1433.5650S ribosomal protein L15 OS=Legionella pneumophil... [more]
RL15_LEGPH4.135e-1433.5650S ribosomal protein L15 OS=Legionella pneumophil... [more]
RL15_LEGPA4.135e-1433.5650S ribosomal protein L15 OS=Legionella pneumophil... [more]
RL15_BACFR4.135e-1436.9150S ribosomal protein L15 OS=Bacteroides fragilis ... [more]
RL15_BACFN4.135e-1436.9150S ribosomal protein L15 OS=Bacteroides fragilis ... [more]
RL15_XANP25.400e-1436.7150S ribosomal protein L15 OS=Xanthobacter autotrop... [more]
RL15_SOLUE5.400e-1433.1250S ribosomal protein L15 OS=Solibacter usitatus (... [more]
RL15_SACEN5.400e-1436.5450S ribosomal protein L15 OS=Saccharopolyspora ery... [more]
RL15_PSEE45.400e-1433.5650S ribosomal protein L15 OS=Pseudomonas entomophi... [more]

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Properties
Property NameValue
Genbank descriptionC34210D05EF PostHarveN Citrus clementina cDNA clone C34210D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932601 ID=FC932601; Name=FC932601; organism=Citrus clementina; type=EST; length=754bp
AGGGCAATGTCAAAACCCTAATGCCAAAACCCCCATCAGGCCTTTGCGTC
CCTCTCAAAGTCCAACAAAGAAATAAACCACCCCAGCTCACTGTCTTAAA
CCAAGCTGCTTCGGCTTCTGCTTCAGCAACTGTTGGTTCGGGTCCCGTTA
CGAATGTACGGTTCCGGTTAAATAACCTGGGCCCACAACCGGGTTCGAGA
AAGAGAGGGAAGAGAAAGGGGAGAGGAATAGCAGCTGGGCAAGGTAACAG
CTGTGGGTTTGGAATGAGAGGTCAGAAATCGAGGTCTGGTCCTGGCGTTA
GAAAGGGTTTTGAAGGTGGTCAAATGCCTCTTTATCGTCGAATTCCTAAG
CTCCGTGGGATTGCCGGAGGTATGCATGCTGGGTTACCTAAGTATGTCCC
TGTTAACTTGAAAGACATAGAAGCAGCTGGTTTTCTAGAGGGGGATGAAG
TCTCACTAGAGACTTTGAAGAAGAAGGGCTTGATCAATCCCTCAGGAAGA
GAAAGGAAACTGCCTTTAAAGATTCTTGGTGATGGAGAATTAAGCACGAA
GCTGAACTTCAAGGCTCGTGCCTTCTCTACATCAGCAAAGGAGAAGCTTG
AAGCTGCAGGCTGTACCCTCACTGTCTTACCTGGCCGAAAGAGGTGGGTG
AAACCATCAGTAGCTAAGAACCTTGCACGAGCTGAAGAATACTTCGCCAA
GAAGAGAGCTGCTGCAGCTGCATCCGATTCACTTCAGCTTGAACACTTGG
NTTT
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