FC932601

Overview
NameFC932601
Unique NameFC932601
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_LACDB (50S ribosomal protein L15 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20
Identity = 61/155 (39.35%), Postives = 85/155 (54.84%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTVL 629
            +LN L P  GS           ++G G + G G +GQ +RSG   R GFEGGQMPL+R +PK     G  +    +Y  VNL D+    F EG  V  E LK KGL+    +++   +K+LG+G+L+ KL  K    S +AK  +EAAG T+ V+
Sbjct:    2 KLNELHPSEGSRHARKRVGRGTSSGFGKTSGRGQKGQHARSGGNTRLGFEGGQMPLFRTMPK----RGFKNINRKEYAIVNLADLNK--FEEGSVVDFEALKAKGLV----KKQLSGVKVLGNGDLNVKLTVKVNKVSEAAKSAIEAAGGTVEVI 146          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_LACDA (50S ribosomal protein L15 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20
Identity = 61/155 (39.35%), Postives = 85/155 (54.84%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTVL 629
            +LN L P  GS           ++G G + G G +GQ +RSG   R GFEGGQMPL+R +PK     G  +    +Y  VNL D+    F EG  V  E LK KGL+    +++   +K+LG+G+L+ KL  K    S +AK  +EAAG T+ V+
Sbjct:    2 KLNELHPSEGSRHARKRVGRGTSSGFGKTSGRGQKGQHARSGGNTRLGFEGGQMPLFRTMPK----RGFKNINRKEYAIVNLADLNK--FEEGSVVDFEALKAKGLV----KKQLSGVKVLGNGDLNVKLTVKVNKVSEAAKSAIEAAGGTVEVI 146          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_BACHD (50S ribosomal protein L15 OS=Bacillus halodurans GN=rplO PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20
Identity = 63/149 (42.28%), Postives = 84/149 (56.38%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAG 611
            +L+ L P  GS          I +G G + G G +GQ +RSG GVR GFEGGQ PLYRR+PK     G  +    ++  VNL+ +    F +G EVS E L + G+++      K  +KILG+G+L  KL  KA  FS SA E +EAAG
Sbjct:    2 KLHELKPAEGSRKVRNRVGRGIGSGNGKTAGKGHKGQNARSGGGVRPGFEGGQNPLYRRLPK----RGFTNPTRKEFAVVNLEKLNR--FEDGTEVSPELLLETGVVS----NAKDGIKILGNGKLEKKLTVKANKFSASAVEAIEAAG 140          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_ROSS1 (50S ribosomal protein L15 OS=Roseiflexus sp. (strain RS-1) GN=rplO PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20
Identity = 58/149 (38.93%), Postives = 85/149 (57.05%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAG 611
            +L++L P PG+          I +G+G + G GM GQK+RSGP     FEGGQM + R++PKLRG          +Y  +N+  +      +G E+++E +  +G I+P+      P+KILGDGEL  KL   A  FS SA+ ++EAAG
Sbjct:    2 KLHDLKPAPGAHRERKRIGRGIGSGKGKTGGKGMMGQKARSGPKPSPSFEGGQMRITRKMPKLRGFKNRWRV---EYQVINIGQLNDVP--DGTELTIEEMVAQGWIHPA-----KPVKILGDGELERKLTIHAHKFSASARARIEAAG 140          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_LISMO (50S ribosomal protein L15 OS=Listeria monocytogenes GN=rplO PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20
Identity = 62/149 (41.61%), Postives = 83/149 (55.70%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAG 611
            +L+ L P  GS            +G G + G G +GQK+RSG GVR GFEGGQ+PL+RRIPK     G  +    ++  VNL  +    F +G EV+ E L + G+I    R  K  +KIL +G +  KL  KA  FS +AKE +EAAG
Sbjct:    2 KLHELKPSEGSRKERNRVGRGTGSGNGKTSGRGHKGQKARSGGGVRLGFEGGQLPLFRRIPK----RGFTNINRKEFAIVNLDVLNR--FEDGTEVTPELLVETGII----RNEKSGIKILSNGNIEKKLTVKANKFSAAAKEAIEAAG 140          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_LISMH (50S ribosomal protein L15 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rplO PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20
Identity = 62/149 (41.61%), Postives = 83/149 (55.70%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAG 611
            +L+ L P  GS            +G G + G G +GQK+RSG GVR GFEGGQ+PL+RRIPK     G  +    ++  VNL  +    F +G EV+ E L + G+I    R  K  +KIL +G +  KL  KA  FS +AKE +EAAG
Sbjct:    2 KLHELKPSEGSRKERNRVGRGTGSGNGKTSGRGHKGQKARSGGGVRLGFEGGQLPLFRRIPK----RGFTNINRKEFAIVNLDVLNR--FEDGTEVTPELLVETGII----RNEKSGIKILSNGNIEKKLTVKANKFSAAAKEAIEAAG 140          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_LISMF (50S ribosomal protein L15 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rplO PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20
Identity = 62/149 (41.61%), Postives = 83/149 (55.70%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAG 611
            +L+ L P  GS            +G G + G G +GQK+RSG GVR GFEGGQ+PL+RRIPK     G  +    ++  VNL  +    F +G EV+ E L + G+I    R  K  +KIL +G +  KL  KA  FS +AKE +EAAG
Sbjct:    2 KLHELKPSEGSRKERNRVGRGTGSGNGKTSGRGHKGQKARSGGGVRLGFEGGQLPLFRRIPK----RGFTNINRKEFAIVNLDVLNR--FEDGTEVTPELLVETGII----RNEKSGIKILSNGNIEKKLTVKANKFSAAAKEAIEAAG 140          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_LISMC (50S ribosomal protein L15 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplO PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20
Identity = 62/149 (41.61%), Postives = 83/149 (55.70%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAG 611
            +L+ L P  GS            +G G + G G +GQK+RSG GVR GFEGGQ+PL+RRIPK     G  +    ++  VNL  +    F +G EV+ E L + G+I    R  K  +KIL +G +  KL  KA  FS +AKE +EAAG
Sbjct:    2 KLHELKPSEGSRKERNRVGRGTGSGNGKTSGRGHKGQKARSGGGVRLGFEGGQLPLFRRIPK----RGFTNINRKEFAIVNLDVLNR--FEDGTEVTPELLVETGII----RNEKSGIKILSNGNIEKKLTVKANKFSAAAKEAIEAAG 140          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_CLOK5 (50S ribosomal protein L15 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rplO PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20
Identity = 63/155 (40.65%), Postives = 90/155 (58.06%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTVL 629
            +L+ L P  GS            +G G + G G +GQK+R+G GVR GFEGGQMPLYRR+PK     G  +    +Y  +N++ +    F +G E++ E L +K +I    R+ K  LKILG+GEL  KL  KA  F+ +A +K+EAAG  + V+
Sbjct:    2 KLHELKPAEGSRKSRKRIGRGTGSGLGRNAGKGEKGQKARAGGGVRIGFEGGQMPLYRRVPK----RGFTNIFAKQYSELNVERLNI--FEDGTEITPELLIEKRMI----RKSKDGLKILGNGELQKKLTVKAVKFTKAAAQKIEAAGGKVEVI 146          
BLAST of FC932601 vs. ExPASy Swiss-Prot
Match: RL15_CLOK1 (50S ribosomal protein L15 OS=Clostridium kluyveri (strain NBRC 12016) GN=rplO PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20
Identity = 63/155 (40.65%), Postives = 90/155 (58.06%), Query Frame = 3
Query:  165 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSTKLNFKARAFSTSAKEKLEAAGCTLTVL 629
            +L+ L P  GS            +G G + G G +GQK+R+G GVR GFEGGQMPLYRR+PK     G  +    +Y  +N++ +    F +G E++ E L +K +I    R+ K  LKILG+GEL  KL  KA  F+ +A +K+EAAG  + V+
Sbjct:    2 KLHELKPAEGSRKSRKRIGRGTGSGLGRNAGKGEKGQKARAGGGVRIGFEGGQMPLYRRVPK----RGFTNIFAKQYSELNVERLNI--FEDGTEITPELLIEKRMI----RKSKDGLKILGNGELQKKLTVKAVKFTKAAAQKIEAAGGKVEVI 146          
The following BLAST results are available for this feature:
BLAST of FC932601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_LACDB1.327e-2039.3550S ribosomal protein L15 OS=Lactobacillus delbrue... [more]
RL15_LACDA1.327e-2039.3550S ribosomal protein L15 OS=Lactobacillus delbrue... [more]
RL15_BACHD1.327e-2042.2850S ribosomal protein L15 OS=Bacillus halodurans G... [more]
RL15_ROSS11.733e-2038.9350S ribosomal protein L15 OS=Roseiflexus sp. (stra... [more]
RL15_LISMO1.733e-2041.6150S ribosomal protein L15 OS=Listeria monocytogene... [more]
RL15_LISMH1.733e-2041.6150S ribosomal protein L15 OS=Listeria monocytogene... [more]
RL15_LISMF1.733e-2041.6150S ribosomal protein L15 OS=Listeria monocytogene... [more]
RL15_LISMC1.733e-2041.6150S ribosomal protein L15 OS=Listeria monocytogene... [more]
RL15_CLOK51.733e-2040.6550S ribosomal protein L15 OS=Clostridium kluyveri ... [more]
RL15_CLOK11.733e-2040.6550S ribosomal protein L15 OS=Clostridium kluyveri ... [more]

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Properties
Property NameValue
Genbank descriptionC34210D05EF PostHarveN Citrus clementina cDNA clone C34210D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932601 ID=FC932601; Name=FC932601; organism=Citrus clementina; type=EST; length=754bp
AGGGCAATGTCAAAACCCTAATGCCAAAACCCCCATCAGGCCTTTGCGTC
CCTCTCAAAGTCCAACAAAGAAATAAACCACCCCAGCTCACTGTCTTAAA
CCAAGCTGCTTCGGCTTCTGCTTCAGCAACTGTTGGTTCGGGTCCCGTTA
CGAATGTACGGTTCCGGTTAAATAACCTGGGCCCACAACCGGGTTCGAGA
AAGAGAGGGAAGAGAAAGGGGAGAGGAATAGCAGCTGGGCAAGGTAACAG
CTGTGGGTTTGGAATGAGAGGTCAGAAATCGAGGTCTGGTCCTGGCGTTA
GAAAGGGTTTTGAAGGTGGTCAAATGCCTCTTTATCGTCGAATTCCTAAG
CTCCGTGGGATTGCCGGAGGTATGCATGCTGGGTTACCTAAGTATGTCCC
TGTTAACTTGAAAGACATAGAAGCAGCTGGTTTTCTAGAGGGGGATGAAG
TCTCACTAGAGACTTTGAAGAAGAAGGGCTTGATCAATCCCTCAGGAAGA
GAAAGGAAACTGCCTTTAAAGATTCTTGGTGATGGAGAATTAAGCACGAA
GCTGAACTTCAAGGCTCGTGCCTTCTCTACATCAGCAAAGGAGAAGCTTG
AAGCTGCAGGCTGTACCCTCACTGTCTTACCTGGCCGAAAGAGGTGGGTG
AAACCATCAGTAGCTAAGAACCTTGCACGAGCTGAAGAATACTTCGCCAA
GAAGAGAGCTGCTGCAGCTGCATCCGATTCACTTCAGCTTGAACACTTGG
NTTT
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