FC932604

Overview
NameFC932604
Unique NameFC932604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPAT_RAT (Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial OS=Rattus norvegicus GN=Pdha2 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.825e-58
Identity = 111/225 (49.33%), Postives = 161/225 (71.56%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQYIPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVD--AEVAEAEKMPVPDNTARNLFED---IYVRGSEPKWMRGRTV 660
            IVGAQVP+GAG+A A +Y +     + LYGDGA+NQGQVFEA+NM+ LWKLP +F CENN+YGMGT+  RS+A T+Y+K+G  IPGL+VNGMD+L+ + A +++ ++  SG GP+V+E  TYRY GHSMSDPG +YR+REE+Q +RS +DPI  L+++M+   ++S EELK +D   +  V+  A+ A  +  P  ++ A  L+       VRG+  KW++ ++V
Sbjct:  167 IVGAQVPLGAGVALACKYLKNGQICLALYGDGAANQGQVFEAYNMSALWKLPCVFICENNRYGMGTAIERSAASTDYHKKGFVIPGLRVNGMDILSVREATKFAADHCRSGKGPIVMELQTYRYHGHSMSDPGISYRTREEVQNVRSKSDPIMLLRERMISNNLSSVEELKEIDADVKKEVEEAAQFATTDPEPPLEDLANYLYHQNPPFEVRGAH-KWLKFKSV 390          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPAT_MOUSE (Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial OS=Mus musculus GN=Pdha2 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.775e-57
Identity = 110/221 (49.77%), Postives = 156/221 (70.59%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQYIPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVD--AEVAEAEKMPVPDNTARNLFED---IYVRGSEPKWMR 648
            IVGAQVP+GAG+AFA +Y +     + LYGDGA+NQGQVFEA+NM+ LWKLP +F CENN YGMGTS  RS+A T+Y+K+G  IPGL+VNGMD+L  + A +++ ++  SG GP+V+E  TYRY GHSMSDPG +YRSREE+  +RS +DPI  L+++++   +++ EELK +D   +  V+  A+ A  +  P  ++ A  L+       VRG+  KW++
Sbjct:  167 IVGAQVPLGAGVAFACKYLKNGQVCLALYGDGAANQGQVFEAYNMSALWKLPCVFICENNLYGMGTSNERSAASTDYHKKGFIIPGLRVNGMDILCVREATKFAADHCRSGKGPIVMELQTYRYHGHSMSDPGISYRSREEVHNVRSKSDPIMLLRERIISNNLSNIEELKEIDADVKKEVEDAAQFATTDPEPAVEDIANYLYHQDPPFEVRGAH-KWLK 386          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPAT_HUMAN (Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial OS=Homo sapiens GN=PDHA2 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.411e-57
Identity = 111/225 (49.33%), Postives = 151/225 (67.11%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQYIPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVD--AEVAEAEKMPVPDNTARNLF---EDIYVRGSEPKWMRGRTV 660
            IVGAQ P+GAG+A A +Y       + LYGDGA+NQGQ+ EAFNMA LWKLP +F CENN YGMGTS  R++A  +YYKRG +IPGLKV+GMDVL  + A +++ NY  SG GP+++E  TYRY GHSMSDPG +YR+REEIQ +RS  DPI  L+ +M+   + + EELK +    R  +D  A+ A  +  P  +    +++       VRG+ P W++ ++V
Sbjct:  164 IVGAQGPLGAGIALACKYKGNDEICLTLYGDGAANQGQIAEAFNMAALWKLPCVFICENNLYGMGTSTERAAASPDYYKRGNFIPGLKVDGMDVLCVREATKFAANYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKRDPIIILQDRMVNSKLATVEELKEIGAEVRKEIDDAAQFATTDPEPHLEELGHHIYSSDSSFEVRGANP-WIKFKSV 387          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA_RHIME (Pyruvate dehydrogenase E1 component subunit alpha OS=Rhizobium meliloti GN=pdhA PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.776e-52
Identity = 107/207 (51.69%), Postives = 142/207 (68.60%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQY--IPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVPDNTARNLFEDI 615
            IVGAQV +G GLAFA +Y    N S+  +GDGA+NQGQV+E+FNMA LWKLPV++  ENN+Y MGTS SR+SA T++ +RG    IPG +V+GMDV A KAA   +  +  SG GP++LE +TYRY GHSMSDP   YRS++E+Q+MRS +DPI  +K ++ + G  +E+ELK +DK  R  V      A+  P PD     L+ DI
Sbjct:  143 IVGAQVSLGTGLAFANRYRGNDNVSLAYFGDGAANQGQVYESFNMAALWKLPVIYIVENNRYAMGTSVSRASAQTDFSQRGASFGIPGYQVDGMDVRAVKAAADEAVEHCRSGKGPIILEMLTYRYRGHSMSDP-AKYRSKDEVQKMRSEHDPIEQVKARLTDKGWATEDELKQIDKEVRDIVADSADFAQSDPEPD--VSELYTDI 346          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA_ZYMMO (Pyruvate dehydrogenase E1 component subunit alpha OS=Zymomonas mobilis GN=pdhA PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.114e-46
Identity = 100/196 (51.02%), Postives = 127/196 (64.80%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQ--YIPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVP 582
            IVGAQVP+GAGLAFA +Y      S   +GDG++NQGQV+EA+NMA LWKLPV+F  ENN Y MGTS  R++A T   +RG    IP L V+GMDVL  + A   + ++  +G GP++LE  TYRY GHSMSDP   YRSREE+  M+  +DP+  LK+ +   GV  E EL  LD+  R  V      AEK P+P
Sbjct:  147 IVGAQVPLGAGLAFAHKYRNDGGCSAAYFGDGSANQGQVYEAYNMAALWKLPVIFVIENNGYAMGTSIQRANAHTALSERGAGFGIPALVVDGMDVLEVRGAATVAVDWVQAGKGPIILEMKTYRYRGHSMSDP-ARYRSREEVNDMKENHDPLDNLKKDLFAAGV-PEAELVKLDEDIRQQVKEAADFAEKAPLP 340          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA_RICBR (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=pdhA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.103e-43
Identity = 95/209 (45.45%), Postives = 132/209 (63.16%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQY--IPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVPDNTARNLFEDIYV 621
            IVGAQVP+G GLAFA++YN   N      GDGA NQGQV+EAFNMA LW LPV++  ENN+Y MGTS +RS+ + + YK+G+   I G ++NGMD       V+ +  Y    + PL+LE  TYRY GHSMSDP   YRS+EE++  +   DPI  +++ +LE    SE +LK ++++ +  V   V  +E  P+P+     L+  IYV
Sbjct:  122 IVGAQVPIGTGLAFAEKYNGTNNICFTFLGDGAVNQGQVYEAFNMAALWGLPVVYIIENNEYSMGTSVARSTFMRDLYKKGESFGIKGFQLNGMDFEEMYDGVKQAAEYVRENSMPLILEVKTYRYRGHSMSDP-AKYRSKEEVETYKE-RDPITEIRKIILENNYASEADLKEIEQSVKEIVKEAVEFSENSPLPNE--EELYTQIYV 326          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA_RICTY (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia typhi GN=pdhA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.703e-41
Identity = 91/209 (43.54%), Postives = 130/209 (62.20%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQY--IPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVPDNTARNLFEDIYV 621
            IVGAQVP+G GLAFA++YN   N      GDGA NQGQV+EAFNMA LW LPV++  ENN+Y MGTS SRS+ + + YK+G+   I G +++GMD        +    Y    + P++LE  TYRY GHSMSDP   YRS+EE+ + +   D +  ++Q +L+    +EE+LK ++++ +  +   V  +E  P+P      L+ DIYV
Sbjct:  122 IVGAQVPIGTGLAFAEKYNGTNNICFTFLGDGAVNQGQVYEAFNMASLWGLPVVYIIENNEYSMGTSVSRSTFMRDLYKKGESFGIRGFQLDGMDFEEMYNGTKQVAEYVRENSFPVILEVKTYRYRGHSMSDP-AKYRSKEEVAKYKE-RDTLVRIRQIILDNKYATEEDLKAIERSVQEVIKVAVEFSENSPLPSED--ELYTDIYV 326          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA_RICFE (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia felis GN=pdhA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.904e-41
Identity = 89/208 (42.79%), Postives = 132/208 (63.46%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQY--IPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVPDNTARNLFEDIY 618
            IVGAQVP+G GLAFA++YN   N      GDGA NQGQV+EAFNMA LW LPV++  ENN+Y MGTS +RS+ + + YK+G+   I G +++GMD        + +  Y    + PL+LE  TYRY GHSMSDP   YRS+EE+++ +   DP+  +++ +L+    +E +LK ++++ +  V   V  +E  P+PD     L+ ++Y
Sbjct:  122 IVGAQVPIGTGLAFAEKYNGTNNICFTFLGDGAVNQGQVYEAFNMAALWGLPVVYIIENNEYSMGTSVARSTFMRDLYKKGESFGIKGFQLDGMDFEEMYNGAKQAAEYVRENSFPLILEVKTYRYRGHSMSDP-AKYRSKEEVEQYKE-RDPLVIIRKTILDNKYATEADLKEIEQSVKEIVKEAVKFSENSPLPDE--GELYTEVY 325          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA_RICCN (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia conorii GN=pdhA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.441e-40
Identity = 88/208 (42.31%), Postives = 130/208 (62.50%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQY--IPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVPDNTARNLFEDIY 618
            IVGAQVP+G GLAF ++YN+  N      GDGA NQGQV+EAFNMA LW LPV++  ENN+Y MGTS +RS+ + + YK+G    I G +++GMD        + +  Y    + PL+LE  TYRY GHSMSDP   YRS+EE+++ +   DP+  +++ +L+    +E +LK ++++ +  V   V  +E  P+PD     L+  +Y
Sbjct:  122 IVGAQVPIGTGLAFVEKYNDTHNICFTFLGDGAVNQGQVYEAFNMAALWGLPVVYIIENNEYSMGTSVARSTFMRDLYKKGASFGIKGFQLDGMDFEEMYDGSKQAAEYVRENSFPLILEVKTYRYRGHSMSDP-AKYRSKEEVEQYKE-RDPLVIIRKTILDNKYVTEADLKAIEQSVKEIVKEAVEFSENSPLPDE--GELYTQVY 325          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA_RICPR (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia prowazekii GN=pdhA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.477e-40
Identity = 87/209 (41.63%), Postives = 130/209 (62.20%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQY--IPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVPDNTARNLFEDIYV 621
            IVGAQVP+G GLAFA++YN   N      GDGA NQGQV+EAFNMA LW LP+++  ENN+Y MGTS +RS+ + + YK+G+   I G +++GMD        +    Y    + P++LE  TYRY GHSMSDP   YRS+EE+++ +   D +  +++ +L+    +E +LK ++++ R  +   V  +E  P+P      L+ +IYV
Sbjct:  122 IVGAQVPIGTGLAFAEKYNGTNNICFTFLGDGAVNQGQVYEAFNMASLWGLPIVYIIENNEYSMGTSVARSTFMCDLYKKGESFGIRGFQLDGMDFEEMYNGTKQVAEYVRENSFPVILEVKTYRYRGHSMSDP-AKYRSKEEVEKYKE-RDTLVRIREIILDNKYATEADLKAIEQSVREIIKVAVEFSENSPLP--AEDELYTEIYV 326          
The following BLAST results are available for this feature:
BLAST of FC932604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ODPAT_RAT5.825e-5849.33Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPAT_MOUSE3.775e-5749.77Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPAT_HUMAN8.411e-5749.33Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_RHIME4.776e-5251.69Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_ZYMMO5.114e-4651.02Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICBR3.103e-4345.45Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICTY1.703e-4143.54Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICFE2.904e-4142.79Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICCN1.441e-4042.31Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICPR5.477e-4041.63Pyruvate dehydrogenase E1 component subunit alpha ... [more]

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Properties
Property NameValue
Genbank descriptionC34210D08EF PostHarveN Citrus clementina cDNA clone C34210D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932604 ID=FC932604; Name=FC932604; organism=Citrus clementina; type=EST; length=733bp
ATTGTCGGTGCTCAGGTGCCCGTCGGTGCCGGTCTCGCCTTCGCCCAACA
GTACAACGAGCAGCCCAACACCTCCATCGTTCTCTACGGTGACGGTGCCT
CTAACCAGGGTCAGGTGTTCGAAGCCTTCAACATGGCCAAGCTGTGGAAG
CTTCCCGTTCTCTTCGGTTGTGAGAACAATAAGTACGGCATGGGTACCTC
CGCCTCGCGCTCCTCCGCTCTGACCGAGTACTACAAGCGTGGTCAGTACA
TTCCCGGTCTCAAGGTCAATGGAATGGACGTCCTTGCCACCAAGGCCGCT
GTCCAGTACAGTAAGAACTACGCCATCAGCGGCAACGGACCTCTCGTCCT
AGAGTACGTCACGTACCGTTACGGTGGTCACTCCATGTCAGACCCCGGTA
CTACTTACCGAAGCCGTGAGGAGATCCAGCGCATGCGCAGCACCAACGAT
CCCATCGCTGGCCTTAAGCAGAAGATGCTCGAGTGGGGCGTCACCTCCGA
GGAGGAGCTCAAGACTCTCGACAAGACCGCCCGTGCCAACGTCGACGCTG
AGGTCGCCGAGGCTGAGAAGATGCCCGTCCCCGACAACACTGCCCGCAAC
CTCTTCGAGGACATCTACGTCCGTGGCTCTGAGCCCAAGTGGATGCGTGG
TCGTACCGTCGATGAGACTTTCTACTACTAGATTGTTTCGCCCTATGGGC
ACTTTGTGCATCATGGAAGGGCTCTTATCGTTG
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