FC932604

Overview
NameFC932604
Unique NameFC932604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ACOA_BACSU (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha OS=Bacillus subtilis GN=acoA PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.234e-25
Identity = 69/209 (33.01%), Postives = 107/209 (51.20%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKR--GQYIPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVPDNTARNLFEDIYV 621
            IVG    +  G A   +Y +  N S+  +GDGA+NQG   E  N+A +W LPV+F  ENN YG  T    +SA      R     +PG+ V+G D+LA   A + +   A +G GP ++E +TYR  GH   D   TY++++E        D I G K  +L+   T   +L  +++    +++  V+ +E  P P ++   L  D+YV
Sbjct:  123 IVGGGFTLACGSALTAKYKQTKNVSVCFFGDGANNQGTFHEGLNLAAVWNLPVVFVAENNGYGEATPFEYASACDSIADRAAAYNMPGVTVDGKDILAVYQAAEEAIERARNGGGPSLIECMTYRNYGHFEGD-AQTYKTKDERVEHLEEKDAIQGFKNYLLK--ETDANKLSDIEQRVSESIEKAVSFSEDSPYPKDS--ELLTDVYV 326          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA_STAES (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.213e-24
Identity = 66/209 (31.58%), Postives = 112/209 (53.59%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQY--IPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMS-DPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVPDNTARNLFEDIY 618
            I+GAQ    AG+AF  +   +   +I   GDG S+QG  +E  N A  +K P +F  +NN Y + T  S+ +A     ++     IPG++V+GMD LA   A   ++  A++G GP V+E +TYRYG H+M+ D  T YR+ +E        DP+   ++ +   G+ +E++   + + A++ + A + EA+       T  +L + +Y
Sbjct:  145 IIGAQYIQTAGVAFGLKKRGKNAVAITYTGDGGSSQGDFYEGINFASAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAISVGIPGIQVDGMDALAVYQATLEARERAVAGEGPTVIETLTYRYGPHTMAGDDPTRYRTSDEDAEWEK-KDPLVRFRKYLEAKGLWNEDKENEVVERAKSEIKAAIKEADN--TEKQTVTSLMDIMY 350          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA_STAEQ (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.213e-24
Identity = 66/209 (31.58%), Postives = 112/209 (53.59%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQY--IPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMS-DPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVPDNTARNLFEDIY 618
            I+GAQ    AG+AF  +   +   +I   GDG S+QG  +E  N A  +K P +F  +NN Y + T  S+ +A     ++     IPG++V+GMD LA   A   ++  A++G GP V+E +TYRYG H+M+ D  T YR+ +E        DP+   ++ +   G+ +E++   + + A++ + A + EA+       T  +L + +Y
Sbjct:  145 IIGAQYIQTAGVAFGLKKRGKNAVAITYTGDGGSSQGDFYEGINFASAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAISVGIPGIQVDGMDALAVYQATLEARERAVAGEGPTVIETLTYRYGPHTMAGDDPTRYRTSDEDAEWEK-KDPLVRFRKYLEAKGLWNEDKENEVVERAKSEIKAAIKEADN--TEKQTVTSLMDIMY 350          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA_BACCE (Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus cereus GN=pdhA PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 5.502e-24
Identity = 61/195 (31.28%), Postives = 111/195 (56.92%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQY--IPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMS-DPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMP 576
            I+GAQ+   AG+A   +   + + +I   GDG ++QG  +E  N A  +K P +F  +NN+Y + T   + SA     ++     I G++V+GMD LA  AA  +++  A++G GP ++E +T+RYG H+M+ D  T YR++ +I+      DPI   +  +   G+ S+E  + + + A+ ++   +A+A++ P
Sbjct:  146 IIGAQIIQTAGVALGMKLRGKKSVAITYTGDGGASQGDFYEGMNFAGAFKAPAIFVVQNNRYAISTPVEKQSAAKTVAQKAVAAGIYGIQVDGMDPLAVYAATAFARERAVNGEGPTLIETLTFRYGPHTMAGDDPTRYRTK-DIENEWEQKDPIVRFRAFLENKGLWSQEVEEKVIEEAKEDIKQAIAKADQAP 339          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA_BACST (Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus stearothermophilus GN=pdhA PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.186e-24
Identity = 62/195 (31.79%), Postives = 109/195 (55.90%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQY--IPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMS-DPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMP 576
            I+GAQ    AG+A   +   +   +I   GDG ++QG  +E  N A  +K P +F  +NN++ + T   + +      ++     IPG++V+GMD LA  AAV+ ++  AI+G GP ++E + +RYG H+MS D  T YRS+ E++   +  DP+   ++ +   G+ SEEE   + + A+  +   + +A++ P
Sbjct:  144 IIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSK-ELENEWAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETP 337          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODBA_MACFA (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.386e-24
Identity = 65/207 (31.40%), Postives = 102/207 (49.28%), Query Frame = 1
Query:    4 VGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQY--IPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVPDNTARNLFEDIY 618
            +  Q+P   G A+A +        I  +G+GA+++G     FN A   + P++F C NN Y + T  S          RG    I  ++V+G DV A   A + ++  A++ N P ++E +TYR G HS SD  + YRS +E+      + PI+ L+  +L  G   EE+ K   K +R  V     +AE+ P P+     LF D+Y
Sbjct:  209 LATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRKKVMKAFEQAERKPKPNPNL--LFSDVY 413          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODBA_HUMAN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo sapiens GN=BCKDHA PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.386e-24
Identity = 65/207 (31.40%), Postives = 102/207 (49.28%), Query Frame = 1
Query:    4 VGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQY--IPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVPDNTARNLFEDIY 618
            +  Q+P   G A+A +        I  +G+GA+++G     FN A   + P++F C NN Y + T  S          RG    I  ++V+G DV A   A + ++  A++ N P ++E +TYR G HS SD  + YRS +E+      + PI+ L+  +L  G   EE+ K   K +R  V     +AE+ P P+     LF D+Y
Sbjct:  209 LATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNL--LFSDVY 413          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA_MYCPN (Pyruvate dehydrogenase E1 component subunit alpha OS=Mycoplasma pneumoniae GN=pdhA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.226e-23
Identity = 60/195 (30.77%), Postives = 114/195 (58.46%), Query Frame = 1
Query:    4 VGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRG--QYIPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSR-EEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPV 579
            +GAQ    AGL +   Y + PN ++ + GDG + +G+ +EA N+A + K   +F   NN++ + T     SA+++   +     IP ++V+G D++A+  A+  + NYA SGNGP+++E+ ++R G H+ SD  + YR++ EE + M+S  DP+  L+  + + G+ + ++    ++   A ++ EV  A ++ V
Sbjct:  135 IGAQYSHAAGLGYMLHYKKLPNVAVTMIGDGGTAEGEFYEAMNIASIHKWNSVFCINNNQFAISTRTKLESAVSDLSTKAIAVNIPRIRVDGNDLIASYEAMHEAANYARSGNGPVLIEFFSWRQGPHTTSDDPSIYRTKEEEAEAMKS--DPVKRLRNFLFDRGILTPQQ----EEEMVAKIEQEVQAAYEVMV 323          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODBA_PANTR (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan troglodytes GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.226e-23
Identity = 64/207 (30.92%), Postives = 102/207 (49.28%), Query Frame = 1
Query:    4 VGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQY--IPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVPDNTARNLFEDIY 618
            +  Q+P   G A+A +        I  +G+GA+++G     FN A   + P++F C NN Y + T  S          RG    I  ++V+G DV A   A + ++  A++ N P ++E +TYR G HS SD  + YRS +E+      + P++ L+  +L  G   EE+ K   K +R  V     +AE+ P P+     LF D+Y
Sbjct:  209 LATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPVSRLRHYLLSQGWWDEEQEKAWRKQSRKKVMEAFEQAERKPKPNPNL--LFSDVY 413          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA_MYCGE (Pyruvate dehydrogenase E1 component subunit alpha OS=Mycoplasma genitalium GN=pdhA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.601e-23
Identity = 61/194 (31.44%), Postives = 114/194 (58.76%), Query Frame = 1
Query:    4 VGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQY--IPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSR-EEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEA-EKM 573
            +GAQ    AGL +   Y +QPN ++ + GDG + +G+ +EA N+A + K   +F   NN++ + T     SA+++   +     IP ++V+G D++A+  A+Q + NYA  GNGP+++E+ +YR G H+ SD  + YR++ EE + M+S  DP+  L+  + +  + ++ +    ++   + ++ E+  A EKM
Sbjct:  135 IGAQYSHAAGLGYMLHYKKQPNVAVTMIGDGGTAEGEFYEAMNIASIHKWNTVFCINNNQFAISTRTKLESAVSDLSVKAIACGIPRVRVDGNDLIASYEAMQDAANYARGGNGPVLIEFFSYRQGPHTTSDDPSIYRTKQEEEEGMKS--DPVKRLRNFLFDRSILNQAQ----EEEMFSKIEQEIQAAYEKM 322          
The following BLAST results are available for this feature:
BLAST of FC932604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ACOA_BACSU2.234e-2533.01Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPA_STAES4.213e-2431.58Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAEQ4.213e-2431.58Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_BACCE5.502e-2431.28Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_BACST7.186e-2431.79Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODBA_MACFA9.386e-2431.402-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_HUMAN9.386e-2431.402-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODPA_MYCPN1.226e-2330.77Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODBA_PANTR1.226e-2330.922-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODPA_MYCGE1.601e-2331.44Pyruvate dehydrogenase E1 component subunit alpha ... [more]

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Properties
Property NameValue
Genbank descriptionC34210D08EF PostHarveN Citrus clementina cDNA clone C34210D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932604 ID=FC932604; Name=FC932604; organism=Citrus clementina; type=EST; length=733bp
ATTGTCGGTGCTCAGGTGCCCGTCGGTGCCGGTCTCGCCTTCGCCCAACA
GTACAACGAGCAGCCCAACACCTCCATCGTTCTCTACGGTGACGGTGCCT
CTAACCAGGGTCAGGTGTTCGAAGCCTTCAACATGGCCAAGCTGTGGAAG
CTTCCCGTTCTCTTCGGTTGTGAGAACAATAAGTACGGCATGGGTACCTC
CGCCTCGCGCTCCTCCGCTCTGACCGAGTACTACAAGCGTGGTCAGTACA
TTCCCGGTCTCAAGGTCAATGGAATGGACGTCCTTGCCACCAAGGCCGCT
GTCCAGTACAGTAAGAACTACGCCATCAGCGGCAACGGACCTCTCGTCCT
AGAGTACGTCACGTACCGTTACGGTGGTCACTCCATGTCAGACCCCGGTA
CTACTTACCGAAGCCGTGAGGAGATCCAGCGCATGCGCAGCACCAACGAT
CCCATCGCTGGCCTTAAGCAGAAGATGCTCGAGTGGGGCGTCACCTCCGA
GGAGGAGCTCAAGACTCTCGACAAGACCGCCCGTGCCAACGTCGACGCTG
AGGTCGCCGAGGCTGAGAAGATGCCCGTCCCCGACAACACTGCCCGCAAC
CTCTTCGAGGACATCTACGTCCGTGGCTCTGAGCCCAAGTGGATGCGTGG
TCGTACCGTCGATGAGACTTTCTACTACTAGATTGTTTCGCCCTATGGGC
ACTTTGTGCATCATGGAAGGGCTCTTATCGTTG
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