FC932604

Overview
NameFC932604
Unique NameFC932604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODBA_MOUSE (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus musculus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.731e-23
Identity = 65/207 (31.40%), Postives = 103/207 (49.76%), Query Frame = 1
Query:    4 VGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQY--IPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVPDNTARNLFEDIY 618
            +  Q+P   G A+A +        I  +G+GA+++G     FN A   + P++F C NN Y + T  S          RG    I  ++V+G DV A   A + ++  A++ N P ++E +TYR G HS SD  + YRS +E+      + PI+ L+Q +L  G   EE+ K   K +R  V     +AE+   P+ +   LF D+Y
Sbjct:  206 LATQIPQAVGAAYAAKRANANRIVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIKSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRQYLLNQGWWDEEQEKAWRKQSRKKVMEAFEQAERKLKPNPSL--LFSDVY 410          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODBA_RAT (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial (Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.567e-23
Identity = 65/207 (31.40%), Postives = 103/207 (49.76%), Query Frame = 1
Query:    4 VGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQY--IPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVPDNTARNLFEDIY 618
            +  Q+P   G A+A +        I  +G+GA+++G     FN A   + P++F C NN Y + T  S          RG    I  ++V+G DV A   A + ++  A++ N P ++E +TYR G HS SD  + YRS +E+      + PI+ L+Q +L  G   EE+ K   K +R  V     +AE+   P+ +   LF D+Y
Sbjct:  205 LATQIPQAVGAAYAAKRANANQIVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRQYLLNQGWWDEEQEKAWRKQSRKKVMEAFEQAERKLKPNPSL--LFSDVY 409          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA_BACSU (Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus subtilis GN=pdhA PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.770e-22
Identity = 63/195 (32.31%), Postives = 105/195 (53.85%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQY--IPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMS-DPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMP 576
            I+GAQ    AG+A   +   +   +I   GDG ++QG  +E  N A  +K P +F  +NN+Y + T   + SA     ++     I G++V+GMD LA  AA   ++  AI+G GP ++E +T+RYG H+M+ D  T YR++ EI+      DP+   +  +   G+ SEEE   + + A+  +   + +A+  P
Sbjct:  146 IIGAQYIQTAGVALGLKKRGKKAVAITYTGDGGASQGDFYEGINFAGAYKAPAIFVVQNNRYAISTPVEKQSAAETIAQKAVAAGIVGVQVDGMDPLAVYAATAEARERAINGEGPTLIETLTFRYGPHTMAGDDPTKYRTK-EIENEWEQKDPLVRFRAFLENKGLWSEEEEAKVIEDAKEEIKQAIKKADAEP 339          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODBA_DICDI (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.726e-22
Identity = 60/205 (29.27%), Postives = 102/205 (49.76%), Query Frame = 1
Query:   13 QVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSAS---RSSALTEYYKRGQYIPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVPDNTARNLFEDIY 618
            Q+P   G ++AQ+   + N +IV +G+GA+++G    A N A     P +F C NNK+ + T +    +   +      G  +  ++V+G D+ A     + ++  A+    P+++E +TYR G HS SD  + YR+ EEI   +   +PI+ L+  M   G  S+ + K     AR  V   +  AEK   P  +   +F D+Y
Sbjct:  200 QLPQAVGSSYAQKLAGEKNCTIVYFGEGAASEGDFHAAMNFAAALSTPTIFFCRNNKWAISTPSKEQYKGDGIAGRGPNGYGMKTIRVDGNDIWAVYNVTKLARKIAVEEQVPVLIEAMTYRVGHHSTSDDSSRYRTVEEINAWKEGKNPISRLRNYMNHKGWWSDAQEKETIANARTTVRESLVNAEKQYKP--SINEIFTDVY 402          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODBA_BOVIN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Bos taurus GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.556e-21
Identity = 61/207 (29.47%), Postives = 101/207 (48.79%), Query Frame = 1
Query:    4 VGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQY--IPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVPDNTARNLFEDIY 618
            +  Q+P   G A+A +        I  +G+GA+++G     FN A   + P++F C NN Y + T  S          RG    I  ++V+G DV A   A + ++  A++ N P ++E +TYR G HS SD  + YRS +E+      + PI+ L+  +   G   +E+ K   K +R  V     +AE+   P+ +   +F D+Y
Sbjct:  219 LATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGILSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHHLQSRGWWDDEQEKAWRKQSRKKVMEAFEQAERKLKPNPSL--IFSDVY 423          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODBA_THET2 (2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1757 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.164e-20
Identity = 65/216 (30.09%), Postives = 107/216 (49.54%), Query Frame = 1
Query:    4 VGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQY--IPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKM-PVPDNTARNLFEDIYVRGSEPKW 642
            + + VP  AG A + +       ++  +GDGA+++G  +   N A +   P +F CENN Y +       +       +     IPG  V+GMDVLA+   V+ +   A  G GP ++E   YRYG HS +D  + YR +EE+   R   DPI   ++ +   G+ +EE  + + +  RA ++  + EAE+  PVP      +F D++   +E  W
Sbjct:  146 IASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFVCENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRK-KDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEW---MFADVF---AEKPW 354          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA_ACHLA (Pyruvate dehydrogenase E1 component subunit alpha (Fragment) OS=Acholeplasma laidlawii GN=pdhA PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.296e-20
Identity = 61/192 (31.77%), Postives = 103/192 (53.65%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQY--IPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMS-DPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAE 567
            I+G+Q  + AGLA A +  +    +    GDG +  G+ +E  N A  +K PV+   +NN++ + T   ++S      ++G    IP ++V+G D+LA   A + + + A  G+GP ++E  TYR G H+ S DP + YR++EE +   +  D IA  K  ++  G  SEEE K L++   A ++    + E
Sbjct:  117 IIGSQSNIAAGLAMASKIRKTNEVTAFTIGDGGTAHGEFYEGLNFAASFKAPVVAVIQNNQWAISTPVRKASNSETLAQKGVAFGIPYIQVDGNDMLAMYVASKEAMDRARKGDGPTLIEAFTYRMGPHTTSDDPCSIYRTKEE-ENEWAKKDQIARFKTYLINKGYWSEEEDKKLEEEVLAEINDTFKKVE 307          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODBA_THET8 (2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0229 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.296e-20
Identity = 65/216 (30.09%), Postives = 107/216 (49.54%), Query Frame = 1
Query:    4 VGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQY--IPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKM-PVPDNTARNLFEDIYVRGSEPKW 642
            + + VP  AG A + +       ++  +GDGA+++G  +   N A +   P +F  ENN Y +       +       +     IPG  V+GMDVLA+   V+ +   A  G GP ++E   YRYG HS +D  + YR +EE+   R   DPI   ++ +   G+ +EE  + + +  RA ++  + EAE+  PVP      +FED++   +E  W
Sbjct:  146 IASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRK-KDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEW---MFEDVF---AEKPW 354          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODBA_PSEPU (2-oxoisovalerate dehydrogenase subunit alpha OS=Pseudomonas putida GN=bkdA1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.005e-17
Identity = 67/212 (31.60%), Postives = 100/212 (47.17%), Query Frame = 1
Query:    4 VGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGT-SASRSSALTEYYKRGQY--IPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVPDN----TARNLFEDIY 618
            +  Q     G A A         +    GDGA+ +     A   A +++ PV+    NN++ + T  A      T +  RG    I  L+V+G D +A  AA +++   A  G GP ++E+VTYR G HS SD  + YR  ++        DPIA LKQ +++ G  SEEE +       A V A   EAE+     N    +A ++FED+Y
Sbjct:  184 LATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHF-PLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASMFEDVY 394          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODBA_PSEAE (2-oxoisovalerate dehydrogenase subunit alpha OS=Pseudomonas aeruginosa GN=bkdA1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.988e-17
Identity = 68/208 (32.69%), Postives = 106/208 (50.96%), Query Frame = 1
Query:   22 VGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGT-SASRSSALTEYYKRGQY--IPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKM------PVPDNTARNLFEDIY 618
            VG G+A A + + +  ++ +  GDGA+ +     A   A +++ PV+    NN++ + T  A      T +  RG    I  L+V+G D LA  AA +++   A    GP ++E+VTYR G HS SD  + YR  ++        DPIA LK+ M+  G+ SEE+ +   K   A V A   +AE         VP  +A ++FED+Y
Sbjct:  192 VGWGMASAIKGDTRIASAWI--GDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGEGTTFANRGVGCGIASLRVDGNDFLAVYAASEWAAERARRNLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWTNF-PLGDPIARLKRHMIGLGIWSEEQHEATHKALEAEVLAAQKQAESHGTLIDGRVP--SAASMFEDVY 394          
The following BLAST results are available for this feature:
BLAST of FC932604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ODBA_MOUSE2.731e-2331.402-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_RAT3.567e-2331.402-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODPA_BACSU1.770e-2232.31Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODBA_DICDI6.726e-2229.272-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_BOVIN2.556e-2129.472-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_THET22.164e-2030.092-oxoisovalerate dehydrogenase subunit alpha OS=Th... [more]
ODPA_ACHLA6.296e-2031.77Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODBA_THET86.296e-2030.092-oxoisovalerate dehydrogenase subunit alpha OS=Th... [more]
ODBA_PSEPU1.005e-1731.602-oxoisovalerate dehydrogenase subunit alpha OS=Ps... [more]
ODBA_PSEAE4.988e-1732.692-oxoisovalerate dehydrogenase subunit alpha OS=Ps... [more]

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Properties
Property NameValue
Genbank descriptionC34210D08EF PostHarveN Citrus clementina cDNA clone C34210D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932604 ID=FC932604; Name=FC932604; organism=Citrus clementina; type=EST; length=733bp
ATTGTCGGTGCTCAGGTGCCCGTCGGTGCCGGTCTCGCCTTCGCCCAACA
GTACAACGAGCAGCCCAACACCTCCATCGTTCTCTACGGTGACGGTGCCT
CTAACCAGGGTCAGGTGTTCGAAGCCTTCAACATGGCCAAGCTGTGGAAG
CTTCCCGTTCTCTTCGGTTGTGAGAACAATAAGTACGGCATGGGTACCTC
CGCCTCGCGCTCCTCCGCTCTGACCGAGTACTACAAGCGTGGTCAGTACA
TTCCCGGTCTCAAGGTCAATGGAATGGACGTCCTTGCCACCAAGGCCGCT
GTCCAGTACAGTAAGAACTACGCCATCAGCGGCAACGGACCTCTCGTCCT
AGAGTACGTCACGTACCGTTACGGTGGTCACTCCATGTCAGACCCCGGTA
CTACTTACCGAAGCCGTGAGGAGATCCAGCGCATGCGCAGCACCAACGAT
CCCATCGCTGGCCTTAAGCAGAAGATGCTCGAGTGGGGCGTCACCTCCGA
GGAGGAGCTCAAGACTCTCGACAAGACCGCCCGTGCCAACGTCGACGCTG
AGGTCGCCGAGGCTGAGAAGATGCCCGTCCCCGACAACACTGCCCGCAAC
CTCTTCGAGGACATCTACGTCCGTGGCTCTGAGCCCAAGTGGATGCGTGG
TCGTACCGTCGATGAGACTTTCTACTACTAGATTGTTTCGCCCTATGGGC
ACTTTGTGCATCATGGAAGGGCTCTTATCGTTG
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