FC932605

Overview
NameFC932605
Unique NameFC932605
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15536 contig Ccv1_Contig15536:1..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932605 vs. ExPASy Swiss-Prot
Match: TYPA_BUCAI (GTP-binding protein TypA/BipA homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=typA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.837e-35
Identity = 80/194 (41.24%), Postives = 119/194 (61.34%), Query Frame = 2
Query:  128 KIEEGKVIKLMKKKGTGMVLIDSAGAGDIISIAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGM-AETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEVNEEHVGLVMEALSHRKAEVMDMGPVPGSAGR 706
            K   GKV K++   G   + I+   AGDII+I G+ K  I  T+ + +    LP + +D PT++M F VN SP +G++G ++T  +I  RL  E   N+A+ +        + V GRGEL L ILIENMRREGFEL VS PK++++  NG++ EP E VT+++ E++ G VM+ +  RK E+ +M  +P S GR
Sbjct:  245 KHRSGKVNKVLNYFGLKRMEINQGYAGDIIAITGLNKLKISDTICHPDNLQPLPALSIDEPTVNMFFSVNTSPFSGKEGKYITSRQILERLKKETMHNVALQIKETKDPNIFSVSGRGELHLSILIENMRREGFELEVSRPKIIFREINGIQKEPFENVTLDIEEKNQGSVMQFIGIRKGELKNM--IPDSKGR 436          
BLAST of FC932605 vs. ExPASy Swiss-Prot
Match: TYPA_BUCBP (GTP-binding protein TypA/BipA homolog OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=typA PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.191e-34
Identity = 75/191 (39.27%), Postives = 118/191 (61.78%), Query Frame = 2
Query:  116 SGTEKIEEGKVIKLMKKKGTGMVLIDSAGAGDIISIAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINV-IPGMAETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEVNEEHVGLVMEALSHRKAEVMDMGP 685
            + TE    GK+ K+++  G   + I+ A +GDII+I G+ K +I  T+ + +  +ALP +++D PT+ M F VN SP +G +G ++T  +I  RL  E   N+A+ +       T+ V GRGEL L ILIENMRREGFEL VS P+V+ KT N +  EP+E V +++  ++ G +M+ +  RK  + ++ P
Sbjct:  245 NNTEVKRTGKIGKILQYLGLNKIEINEAQSGDIIAITGIDKLNISDTICDPQYISALPMLKIDEPTVEMLFSVNKSPFSGTEGKYITSRQIFNRLKKEENYNVALKIKETNDTNTFSVSGRGELHLSILIENMRREGFELEVSRPQVILKTINELIQEPMETVVLDIENKYQGTIMKTIGQRKGTISNITP 435          
BLAST of FC932605 vs. ExPASy Swiss-Prot
Match: TYPA_BUCAP (GTP-binding protein TypA/BipA homolog OS=Buchnera aphidicola subsp. Schizaphis graminum GN=typA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.465e-34
Identity = 76/193 (39.38%), Postives = 115/193 (59.59%), Query Frame = 2
Query:  140 GKVIKLMKKKGTGMVLIDSAGAGDIISIAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGM-AETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEVNEEHVGLVMEALSHRKAEVMDMGPVPGSAGRTNY 715
            GK+ K++   G   + I    AGDII+I G+ K +I  T+ + +    LP + +D PT++M F VN SP +G++G ++T  +I  RL  E   N+A+ V     A  + V GRGEL L ILIENMRREGFEL VS PK++++  N +K EP E + +++ E+H G +M+ +  RK E+ ++   P    R  Y
Sbjct:  249 GKINKVLNYFGLKRLEIQKGDAGDIIAITGLNKLNISDTICHPDNLCPLPPLIIDEPTVNMFFSVNTSPFSGKEGKYITSRQILERLKKETIHNVALQVKETKDANIFSVSGRGELHLSILIENMRREGFELEVSRPKIIFREINDIKQEPFENIILDIEEKHQGNIMKFIGERKGELKNITVDPNKRIRLEY 441          
The following BLAST results are available for this feature:
BLAST of FC932605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
TYPA_BUCAI1.837e-3541.24GTP-binding protein TypA/BipA homolog OS=Buchnera ... [more]
TYPA_BUCBP1.191e-3439.27GTP-binding protein TypA/BipA homolog OS=Buchnera ... [more]
TYPA_BUCAP3.465e-3439.38GTP-binding protein TypA/BipA homolog OS=Buchnera ... [more]

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Properties
Property NameValue
Genbank descriptionC34210D09EF PostHarveN Citrus clementina cDNA clone C34210D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932605 ID=FC932605; Name=FC932605; organism=Citrus clementina; type=EST; length=736bp
CAATGCTGGTTCAATGATGGAAAAAGACTTCTATCTTGGGCGAATATTAA
CCGGTCGTGTTTCTTCTGGTGTTGTTTCTGTTGGTGACAAAGTACATGGA
CTACGAATCACTGATTCTGGGACTGAGAAGATTGAAGAAGGAAAGGTTAT
AAAGCTAATGAAAAAGAAAGGTACAGGCATGGTTCTAATTGATAGTGCTG
GAGCGGGTGACATTATCTCAATAGCAGGCATGACAAAACCATCAATAGGC
CATACAGTAGCAAATACAGAGGTTACAACTGCATTACCAACCATTGAGTT
GGACCCCCCAACCATTTCCATGACTTTTGGTGTCAATGACTCTCCATTGG
CTGGTCGTGATGGTACTCATTTGACTGGAGGAAAGATTGGTGCTCGGCTA
ATGTCTGAAGCTGAAACAAACCTTGCAATAAATGTAATTCCAGGCATGGC
TGAAACTTATGAGGTTCAGGGGAGGGGAGAACTTCAACTGGGTATATTAA
TCGAGAATATGAGGCGTGAAGGATTTGAGCTTTCTGTATCACCACCTAAA
GTTATGTATAAAACTGAGAATGGTGTAAAGCTCGAGCCAATTGAAGAAGT
GACTATCGAGGTTAACGAGGAACATGTGGGGTTGGTTATGGAAGCTCTCT
CTCACAGGAAAGCTGAAGTTATGGACATGGGTCCTGTCCCTGGAAGTGCT
GGCAGGACTAACTATCCTTAACTGTCATCAGGGGNC
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