FC932624

Overview
NameFC932624
Unique NameFC932624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: Y394_PSEAE (UPF0001 protein PA0394 OS=Pseudomonas aeruginosa GN=PA0394 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.136e-28
Identity = 74/164 (45.12%), Postives = 96/164 (58.54%), Query Frame = 3
Query:  114 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMP 602
            +  V  R+ +AA+ + R P  + ++AVSKTKP + +R+ + AG R FGENY+QE + K A+L D  L WHFIG +QSNK +P+     +   V SVD  KIA RL+      G  PL V +QVN SGE SKSG  P     L + V Q  PNL   GLM I  P
Sbjct:    8 IAKVAARIREAAQAAGRDPATVGLLAVSKTKPAAAVREAHAAGLRDFGENYLQEALGKQAELADLPLNWHFIGPIQSNKTRPI---AEHFQWVHSVDRLKIAQRLSEQ-RPAGLPPLNVCLQVNVSGEASKSGCAPEDLPALAEAVKQ-LPNLRLRGLMAIPEP 166          
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: PROSC_CAEEL (Proline synthetase co-transcribed bacterial homolog protein OS=Caenorhabditis elegans GN=F09E5.8 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.045e-27
Identity = 81/201 (40.30%), Postives = 114/201 (56.72%), Query Frame = 3
Query:  114 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD---DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRK--PLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYT-STPEN--FKTLAKCRSEVCKALGNTEEHV 692
            L ++I+ V  A   +S+   R R+VAVSKTK   +I   Y    R FGENYVQE+ EK+  L     D+ WHFIG +QSNK+  +    P L  VE+V+ EK A   ++     G    PL+VLVQVNTSGE++K G+E     +L + + + C NL+F G MTIG  D + ++ EN  F+ L K R    +  G + + V
Sbjct:   10 LFNIIEAVADAVT-ASQATKRCRLVAVSKTKSADLIEACYSQNQRHFGENYVQELEEKSDVLASKCLDIRWHFIGQVQSNKIGKI-CNSPGLWCVETVETEKHARIFDKEWSKHGANLSPLRVLVQVNTSGEDNKGGIEIGEAPKLAEFIRKECQNLKFDGFMTIGSFDNSHASGENPDFEKLFKVRQTWAEQTGESADSV 208          
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: Y274_AQUAE (UPF0001 protein aq_274 OS=Aquifex aeolicus GN=aq_274 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.715e-27
Identity = 73/187 (39.04%), Postives = 108/187 (57.75%), Query Frame = 3
Query:  114 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPEN----FKTLAKCRSEV 659
            L  V++R+ +A ER+ R  +  +++  SKT P  VIR+ Y  G + +GEN VQE ++K   L D DLEWHFIG LQ+NKVK L+  V    ++ S+D + +A  + +           VL++VN  GEE+K GVEP    EL ++  +  PN++  GLMTI  P Y   PE+    F+ L + R E+
Sbjct:    7 LSRVLERIQKACERAGRGENCAKLLGASKTVPPEVIREFYNCGLKVYGENRVQEFLKKYEALKDLDLEWHFIGRLQTNKVKYLMGKV---VLIHSLDRKNLADEIQKRA-FKNNIVQDVLIEVNVGGEETKGGVEPENLKELFEYTLE-LPNVKVLGLMTI--PPYLENPEDVRPYFRKLRELRDEL 186          

HSP 2 Score: 21.1718 bits (43), Expect = 5.715e-27
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 2
Query:  695 LSMGMSGDFE 724
            LSMGMS DFE
Sbjct:  197 LSMGMSHDFE 206          
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: YBD6_YEAST (UPF0001 protein YBL036C OS=Saccharomyces cerevisiae GN=YBL036C PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.501e-26
Identity = 75/177 (42.37%), Postives = 108/177 (61.02%), Query Frame = 3
Query:  174 RIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLN--RMVETMGRKPLKVLVQVNTSGEESKSGV-EPSGCLELVK-HVSQNCPNLEFCGLMTIGM--PDYTSTPEN--FKTLAKCRSEVCKALGNT 680
            +I ++ VSK KP S I+ +Y+ G R FGENYVQE++EKA  LPDD++WHFIG LQ+NK K  LA VPNL  VE++D+ K A +LN  R        P+   VQ+NTS E+ KSG+   +   E++   +S+ C  ++  GLMTIG     +  + EN  F TL + + ++    G +
Sbjct:   41 KILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCKD-LAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTS 216          
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: YGGS_ECOLI (UPF0001 protein yggS OS=Escherichia coli (strain K12) GN=yggS PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.564e-23
Identity = 70/168 (41.67%), Postives = 93/168 (55.36%), Query Frame = 3
Query:  114 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD----DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPD 605
            L  V  ++  AA R  R P+ I ++AVSKTKP S I +  +AG R FGENYVQE V+K     +     LEWHFIG LQSNK + +     +     ++D  +IA RLN         PL VL+Q+N S E SKSG++ +   EL   V++  P L   GLM I  P+
Sbjct:    8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQ-RPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE 170          
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: YGGS_ECOL6 (UPF0001 protein yggS OS=Escherichia coli O6 GN=yggS PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.564e-23
Identity = 70/168 (41.67%), Postives = 93/168 (55.36%), Query Frame = 3
Query:  114 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD----DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPD 605
            L  V  ++  AA R  R P+ I ++AVSKTKP S I +  +AG R FGENYVQE V+K     +     LEWHFIG LQSNK + +     +     ++D  +IA RLN         PL VL+Q+N S E SKSG++ +   EL   V++  P L   GLM I  P+
Sbjct:    8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQ-RPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE 170          
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: YGGS_ECO57 (UPF0001 protein yggS OS=Escherichia coli O157:H7 GN=yggS PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.564e-23
Identity = 70/168 (41.67%), Postives = 93/168 (55.36%), Query Frame = 3
Query:  114 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD----DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPD 605
            L  V  ++  AA R  R P+ I ++AVSKTKP S I +  +AG R FGENYVQE V+K     +     LEWHFIG LQSNK + +     +     ++D  +IA RLN         PL VL+Q+N S E SKSG++ +   EL   V++  P L   GLM I  P+
Sbjct:    8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQ-RPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE 170          
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: Y395_HELPJ (UPF0001 protein jhp_0986 OS=Helicobacter pylori J99 GN=jhp_0986 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 9.809e-23
Identity = 66/167 (39.52%), Postives = 93/167 (55.69%), Query Frame = 3
Query:  177 IRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG--MPDYTSTPENFKTLAKCRSEVCKA 668
            ++IVAVSK      I+  Y    R FGEN VQ++  K   L    LEWH IG+LQ NK+  LL+  P  A++ S+D+ K+A ++ +  E +G   L  L+QVN++ EESKSGV P   LE    +S+ C  L+  GLM IG    D T   ++F T  K   ++  A
Sbjct:   28 VKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKIKMHSLEHLPLEWHMIGSLQENKINALLSLKP--ALLHSLDSLKLALKIEKRCEILGVN-LNALLQVNSAYEESKSGVVPEEALETYSQISETCKRLKLKGLMCIGAHTDDETKIEKSFTTTKKLFDQIKNA 191          

HSP 2 Score: 22.3274 bits (46), Expect = 9.809e-23
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 2
Query:  680 RRACDLSMGMSGDFE 724
            + A  LSMGMS DFE
Sbjct:  189 KNASVLSMGMSDDFE 203          
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: Y395_HELPY (UPF0001 protein HP_0395 OS=Helicobacter pylori GN=HP_0395 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.276e-22
Identity = 69/186 (37.10%), Postives = 103/186 (55.38%), Query Frame = 3
Query:  120 SVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG--MPDYTSTPENFKTLAKCRSEVCKA 668
            ++I ++ +A    SR    ++IVAVSK      I+  Y    R FGEN VQ++  K   L    LEWH IG+LQ NK+  LL+  P  A++ S+D+ K+A ++ +  E +G   L  L+QVN++ EESKSGV P   LE+   +S+ C +L+  GLM IG    D     ++F T  K   ++  A
Sbjct:   10 ALITKIEKARTAYSRH-HIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKTKMHSLEHLPLEWHMIGSLQENKINALLSLKP--ALLHSLDSLKLALKIEKRCEILGVN-LNALLQVNSAYEESKSGVVPEEALEIYSQISETCKHLKLKGLMCIGAHTDDEKEIEKSFITTKKLFDQIKNA 191          

HSP 2 Score: 22.3274 bits (46), Expect = 1.276e-22
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 2
Query:  680 RRACDLSMGMSGDFE 724
            + A  LSMGMS DFE
Sbjct:  189 KNASVLSMGMSDDFE 203          
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: Y531_BUCAP (UPF0001 protein BUsg_531 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=BUsg_531 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.375e-18
Identity = 56/160 (35.00%), Postives = 93/160 (58.13%), Query Frame = 3
Query:  114 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP--DDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLM 587
            ++ + +++    ++++ P  +I+I+AVSK + +  I+    +G   FGENYVQE ++K  +L    ++ WHFIG +QSNK K +     N    +++D EKIA  LN+  E     P+ VL+Q+N S E +K+G+      +L K +S   PNL F G+M
Sbjct:    8 IKIIKKKIQYFLKKNNYPLKKIKIIAVSKNQGIDKIKLAISSGIHEFGENYVQEGIDKIQKLKKYQNIIWHFIGKVQSNKTKII---AENFDWCQTIDREKIAILLNKYREKKS-FPMNVLMQINISNEVTKNGICIKNYKKLAKTISL-MPNLNFRGIM 162          
The following BLAST results are available for this feature:
BLAST of FC932624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
Y394_PSEAE6.136e-2845.12UPF0001 protein PA0394 OS=Pseudomonas aeruginosa G... [more]
PROSC_CAEEL3.045e-2740.30Proline synthetase co-transcribed bacterial homolo... [more]
Y274_AQUAE5.715e-2739.04UPF0001 protein aq_274 OS=Aquifex aeolicus GN=aq_2... [more]
YBD6_YEAST7.501e-2642.37UPF0001 protein YBL036C OS=Saccharomyces cerevisia... [more]
YGGS_ECOLI1.564e-2341.67UPF0001 protein yggS OS=Escherichia coli (strain K... [more]
YGGS_ECOL61.564e-2341.67UPF0001 protein yggS OS=Escherichia coli O6 GN=ygg... [more]
YGGS_ECO571.564e-2341.67UPF0001 protein yggS OS=Escherichia coli O157:H7 G... [more]
Y395_HELPJ9.809e-2339.52UPF0001 protein jhp_0986 OS=Helicobacter pylori J9... [more]
Y395_HELPY1.276e-2237.10UPF0001 protein HP_0395 OS=Helicobacter pylori GN=... [more]
Y531_BUCAP3.375e-1835.00UPF0001 protein BUsg_531 OS=Buchnera aphidicola su... [more]

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Properties
Property NameValue
Genbank descriptionC34210F04EF PostHarveN Citrus clementina cDNA clone C34210F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932624 ID=FC932624; Name=FC932624; organism=Citrus clementina; type=EST; length=726bp
GGAATCAGGAACATGAAGAAGAGCGCAAGAGGAGAGAGAATCATATCAAC
GAACGAGTAGAAGCAGAAACCATGGCTGCGTCTGCCGCCACAGATGGCGT
TGCAGCGACGGCGCTTCGGTCCGTGATCCAACGGGTCCACCAAGCCGCCG
AGAGATCCAGTCGCCCGCCGGACCGGATTCGAATCGTCGCTGTCAGCAAA
ACCAAACCGGTCTCAGTAATCCGTCAGGTTTATGAGGCCGGTCACCGATG
TTTCGGTGAAAACTACGTTCAAGAAATAGTGGAAAAGGCGGCTCAGCTTC
CAGATGATCTAGAATGGCATTTCATTGGGAACCTGCAGAGCAATAAAGTG
AAACCTTTATTGGCTGGTGTGCCTAACCTGGCAATGGTAGAAAGTGTGGA
CAACGAGAAGATTGCAGGTCGTCTTAATCGTATGGTTGAAACCATGGGAA
GGAAGCCTTTAAAAGTCTTGGTTCAAGTGAATACCAGTGGAGAAGAATCG
AAATCTGGAGTTGAGCCTTCAGGGTGTCTGGAACTTGTGAAACATGTTAG
TCAAAACTGTCCGAATCTTGAGTTTTGTGGCCTAATGACAATTGGGATGC
CAGATTACACATCGACCCCGGAGAACTTCAAGACATTAGCAAAATGCAGA
AGTGAGGTATGCAAGGCTCTTGGAAATACAGAAGAGCATGTGATCTGTCT
ATGGGAATGTCTGGTGACTTCGAGCT
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