FC932624

Overview
NameFC932624
Unique NameFC932624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: Y556_SYNY3 (UPF0001 protein slr0556 OS=Synechocystis sp. (strain PCC 6803) GN=slr0556 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.633e-18
Identity = 58/144 (40.28%), Postives = 84/144 (58.33%), Query Frame = 3
Query:  168 PDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD--DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTI 593
            P  +R+VAV+KTK ++ I   Y AG R F E+ +QE + K   L +  D+ WHFIG LQSNK + +   V N   + SVDN  IA +L+R+ E + + P + L+Q+    +E+KSG      L+L     +   NL+ CGLMTI
Sbjct:   15 PPSVRLVAVTKTKAIADIEAAYGAGIRDFAESRIQEALPKIEALANYQDINWHFIGRLQSNKARKV---VENFTYIHSVDNLAIAVKLDRIAEELNKFP-QGLLQIKLLPDENKSGWTREE-LKLDLPQLELLKNLKICGLMTI 153          

HSP 2 Score: 21.9422 bits (45), Expect = 3.633e-18
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 2
Query:  692 DLSMGMSGDF 721
            +LSMGMSGD+
Sbjct:  187 ELSMGMSGDY 196          
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: YLME_BACSU (UPF0001 protein ylmE OS=Bacillus subtilis GN=ylmE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.752e-17
Identity = 56/186 (30.11%), Postives = 97/186 (52.15%), Query Frame = 3
Query:  114 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG--MPDYTSTPENFKTLAKCRSEVCK 665
            LR + +R+++A  RS R  D + ++AV+K       ++  +AG  C GEN   E++ K   +  + EWHFIG+LQS K K +   V +++ + S+D   +A    + +E      ++  VQVNTS E SK G++    +  ++ +S    ++   GLMT+     D       F++L + R +V K
Sbjct:    7 LRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAELLRKQELMKGNPEWHFIGSLQSRKAKSV---VNSVSYIHSLDRLSLA----KEIEKRAEGTVRCFVQVNTSLEPSKHGMKKEEVIPFIQELS-GFEHILVAGLMTMAPLTDDQDQIRSCFRSLRELRDQVQK 184          

HSP 2 Score: 22.7126 bits (47), Expect = 1.752e-17
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  692 DLSMGMSGDFE 724
            +LSMGMS DFE
Sbjct:  194 ELSMGMSNDFE 204          
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: Y549_BUCAI (UPF0001 protein BU549 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=BU549 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 48/145 (33.10%), Postives = 79/145 (54.48%), Query Frame = 3
Query:  174 RIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP--DDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQ---NCPNLEFCGLMTI 593
            +I I+AVSK + ++ I +   +G   FGENY+QE + K   L    ++ WHFIG +QSNK K +     N +  ++VD EKIA  LN+        P+ VL+Q+N   E     ++ +  ++  + ++Q   + PNL   G+M +
Sbjct:    3 KITIIAVSKNRNINNIEEAIRSGINNFGENYLQESLIKIENLKKYKNITWHFIGKIQSNKTKKI---AQNFSWCQTVDREKIAVLLNKF-RPKNLPPINVLIQINNLKE-----LQNNRYIDQYQELAQLILSMPNLNLRGIMAV 138          
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: Y2153_CORGL (UPF0001 protein Cgl2153/cg2364 OS=Corynebacterium glutamicum GN=Cgl2153 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.720e-12
Identity = 61/192 (31.77%), Postives = 87/192 (45.31%), Query Frame = 3
Query:  132 RVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVE------TMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGNTEEH 689
            R+       +RP   +R++ V+K  PV  I+ + E G    GEN  QE   KA +LP D+++H IG +QS K   +       A V SVD+EKIA  L R V             L   +Q++  G+ S+ G   S   +L   +S +  +L F GLM +  P     PE      K  S+    L   EEH
Sbjct:    4 RIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQEFGVTAVGENREQEARAKALELP-DMDFHMIGQIQSKKANSIARWA---AAVHSVDSEKIAEALGRGVALALDRGDRTSDELPCFIQLSLDGDPSRGGTPLSQVTQLADCIS-DTTHLRFEGLMCV--PPLGWGPE------KAFSQARDVLSGLEEH 182          
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: Y497_BUCBP (UPF0001 protein bbp_497 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=bbp_497 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 47/168 (27.98%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  114 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTST 617
            ++ + Q++   +++      +I+++AVSK + V+ I++    G   FGENYVQE   K  +L +++EWH+IG +QSNK   +     N +   ++ N+K A  LN+         L  L+Q+N          +     +L K ++ +  NL   G+M   MP + +T
Sbjct:    8 IKKLKQKITNISKKFKINTQKIKLLAVSKNRSVNDIKKAILCGQNSFGENYVQESQPK-IKLFNNIEWHYIGQIQSNKAHII---AKNFSWCHTITNKKTAVLLNK-YRPYSLPKLNTLIQINIRDNTINIDDDIETIKQLAKTIN-SLDNLNLRGIM--AMPYFKNT 167          
The following BLAST results are available for this feature:
BLAST of FC932624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
Y556_SYNY33.633e-1840.28UPF0001 protein slr0556 OS=Synechocystis sp. (stra... [more]
YLME_BACSU1.752e-1730.11UPF0001 protein ylmE OS=Bacillus subtilis GN=ylmE ... [more]
Y549_BUCAI4.269e-1333.10UPF0001 protein BU549 OS=Buchnera aphidicola subsp... [more]
Y2153_CORGL4.720e-1231.77UPF0001 protein Cgl2153/cg2364 OS=Corynebacterium ... [more]
Y497_BUCBP6.816e-1127.98UPF0001 protein bbp_497 OS=Buchnera aphidicola sub... [more]

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Properties
Property NameValue
Genbank descriptionC34210F04EF PostHarveN Citrus clementina cDNA clone C34210F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932624 ID=FC932624; Name=FC932624; organism=Citrus clementina; type=EST; length=726bp
GGAATCAGGAACATGAAGAAGAGCGCAAGAGGAGAGAGAATCATATCAAC
GAACGAGTAGAAGCAGAAACCATGGCTGCGTCTGCCGCCACAGATGGCGT
TGCAGCGACGGCGCTTCGGTCCGTGATCCAACGGGTCCACCAAGCCGCCG
AGAGATCCAGTCGCCCGCCGGACCGGATTCGAATCGTCGCTGTCAGCAAA
ACCAAACCGGTCTCAGTAATCCGTCAGGTTTATGAGGCCGGTCACCGATG
TTTCGGTGAAAACTACGTTCAAGAAATAGTGGAAAAGGCGGCTCAGCTTC
CAGATGATCTAGAATGGCATTTCATTGGGAACCTGCAGAGCAATAAAGTG
AAACCTTTATTGGCTGGTGTGCCTAACCTGGCAATGGTAGAAAGTGTGGA
CAACGAGAAGATTGCAGGTCGTCTTAATCGTATGGTTGAAACCATGGGAA
GGAAGCCTTTAAAAGTCTTGGTTCAAGTGAATACCAGTGGAGAAGAATCG
AAATCTGGAGTTGAGCCTTCAGGGTGTCTGGAACTTGTGAAACATGTTAG
TCAAAACTGTCCGAATCTTGAGTTTTGTGGCCTAATGACAATTGGGATGC
CAGATTACACATCGACCCCGGAGAACTTCAAGACATTAGCAAAATGCAGA
AGTGAGGTATGCAAGGCTCTTGGAAATACAGAAGAGCATGTGATCTGTCT
ATGGGAATGTCTGGTGACTTCGAGCT
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