FC932629

Overview
NameFC932629
Unique NameFC932629
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932629 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.332e-15
Identity = 51/148 (34.46%), Postives = 75/148 (50.68%), Query Frame = 3
Query:  234 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVY 677
            +F++A+ AEF+A            I +  + +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++           G G   +    + G GL  E+I TF LV+
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINWGGKENPLP-------VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLTAGHGLLVELIITFQLVF 172          
BLAST of FC932629 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.270e-15
Identity = 51/148 (34.46%), Postives = 74/148 (50.00%), Query Frame = 3
Query:  234 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVY 677
            +F++A+ AEF+A            I +    +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++           G G   +    + G GL  E+I TF LV+
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-------VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLTAGHGLLVELIITFQLVF 172          
BLAST of FC932629 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.270e-15
Identity = 51/148 (34.46%), Postives = 74/148 (50.00%), Query Frame = 3
Query:  234 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVY 677
            +F++A+ AEF+A            I +    +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++           G G   +    + G GL  E+I TF LV+
Sbjct:   36 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-------VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPNVVG-GLGVTTVHGNLTAGHGLLVELIITFQLVF 175          
BLAST of FC932629 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.411e-14
Identity = 54/154 (35.06%), Postives = 77/154 (50.00%), Query Frame = 3
Query:  219 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAG-VGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVY 677
            E T     +A +AEFI+            I Y   T+     DG A   G++  + A    +FV V   A ISGGH+NPAVTFG F+   ++L+R ++Y++AQ LG+I    L+     S    +G     L++G   G  L  EI+ TF LVY
Sbjct:   13 EATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTN-----DGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLVY 156          
BLAST of FC932629 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.842e-14
Identity = 51/148 (34.46%), Postives = 73/148 (49.32%), Query Frame = 3
Query:  234 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVY 677
            +F++A+ AEF+A            I +     P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   R++S+ ++V Y+ AQCLGAI G G++           G G   +    S G GL  E+I TF LV+
Sbjct:   33 TFWKAVTAEFLAMLIFVLLSLGSTINWGGAEKPLP-------VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLSAGHGLLVELIITFQLVF 172          
BLAST of FC932629 vs. ExPASy Swiss-Prot
Match: AQP_ANOGA (Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP008842 PE=3 SV=4)

HSP 1 Score: 79.337 bits (194), Expect = 2.406e-14
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  375 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYL 680
            IA+ FG ++  L      +SG HINPAVT GL +   VS+++   Y+V+QC+GAI+G  ++KA   S     G G   +A G STG G+  E + TF+LV++
Sbjct:   57 IAFTFGLVVATLAQAFGHVSGCHINPAVTIGLIVTADVSILKGAFYIVSQCIGAIAGAAVIKAATPSEVVG-GLGVTGIAPGLSTGQGVLIEALITFMLVFV 157          
BLAST of FC932629 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.406e-14
Identity = 51/148 (34.46%), Postives = 73/148 (49.32%), Query Frame = 3
Query:  234 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVY 677
            +F++A+ AEF+A            I +     P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++           G G   +    + G GL  E+I TF LV+
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLP-------VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVG-GLGVTMVHGNLTAGHGLLVELIITFQLVF 172          
BLAST of FC932629 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14
Identity = 59/170 (34.71%), Postives = 81/170 (47.65%), Query Frame = 3
Query:  219 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVG----LAAEIIGTFVLVYLSSRPLIPEKRRD 716
            EL+     +A +AEFI+            + +   TD      G    G++  + A    +FV V   A ISGGH+NPAVTFG F+   +SLV+AV+Y VAQ LG++    L+K           GGA   A   S GVG    +  EI+ TF LVY      +  K+ D
Sbjct:   13 ELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGG----GTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKIAT--------GGAAVGAFSLSAGVGAWNAVVFEIVMTFGLVYTVYATAVDPKKGD 170          
BLAST of FC932629 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14
Identity = 57/149 (38.26%), Postives = 77/149 (51.68%), Query Frame = 3
Query:  243 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVG----LAAEIIGTFVLVY 677
            RA +AEFI+            I +   TD        +G+    +A AFG  +FV V   A ISGGH+NPAVTFG+ L   ++L+R ++Y +AQ LG+++       F  S+ T   GG    A G S GVG    L  EI+ TF LVY
Sbjct:   22 RAALAEFISTLIFVFAGSGSGIAFNKITDNGATTP--SGLVAAALAHAFG--LFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAA-----CFLLSFAT---GGEPIPAFGLSAGVGSLNALVFEIVMTFGLVY 158          
BLAST of FC932629 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.538e-13
Identity = 53/157 (33.76%), Postives = 78/157 (49.68%), Query Frame = 3
Query:  219 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGL----AAEIIGTFVLVY 677
            E T+    +A +AEFI+            + +   T+        +G+    +A AFG  +FV V   A ISGGH+NPAVTFG F+   ++L+R ++Y +AQ LG++    ++K           GG    A G S GVG+      EI+ TF LVY
Sbjct:   13 EATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTP--SGLVAAAVAHAFG--LFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILKFAT--------GGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVY 157          
The following BLAST results are available for this feature:
BLAST of FC932629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
AQP4_DIPME6.332e-1534.46Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
AQP4_RAT8.270e-1534.46Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_NOTAL8.270e-1534.46Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
TIP1_MEDTR1.411e-1435.06Probable aquaporin TIP-type OS=Medicago truncatula... [more]
AQP4_BOVIN1.842e-1434.46Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
AQP_ANOGA2.406e-1441.18Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP0088... [more]
AQP4_HUMAN2.406e-1434.46Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
TIP12_ORYSJ3.143e-1434.71Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP12_ARATH3.143e-1438.26Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP11_ARATH4.538e-1333.76Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]

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Properties
Property NameValue
Genbank descriptionC34210F09EF PostHarveN Citrus clementina cDNA clone C34210F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932629 ID=FC932629; Name=FC932629; organism=Citrus clementina; type=EST; length=751bp
AAAAAAACAAGCAAAAAAAAAGAAAAAGAAAAAGAAAAAGGAAAAGGCTT
CTCTCTCGTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCTCTGTTTC
TCTCCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGGGGTGG
CAGAGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCCGGAG
CCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGAGCCTT
GATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTCTTGA
CTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGACGGC
TGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGCATGAT
CTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATTAACC
CGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGTCCGT
GCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGTGTTGG
GTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGTGGGG
CCAACGAGCTGGCCGATGGGTACAGCACCGGCGTTGGATTGGCCGCCGAG
ATCATCGGCACCTTTGTCTTGGTTTACCTGTCTTCTCGGCCACTGATCCC
AGAGAAGCGCAGAGACTCCCACGTCCGTTTGGCACGCTCCCCATGGATTG
C
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