FC932640

Overview
NameFC932640
Unique NameFC932640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15544 contig Ccv1_Contig15544:1..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: AATM_XENTR (Aspartate aminotransferase, mitochondrial OS=Xenopus tropicalis GN=got2 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.028e-45
Identity = 94/181 (51.93%), Postives = 123/181 (67.96%), Query Frame = 1
Query:  148 SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY-HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVL 687
            + S +  +   P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VL+ VRKAE  L + ++  KEYLPI GL +F + SA+L LG +  AI+  R  TVQ +SGTGSLRVGA FL R Y +   +Y+P+P+WGNH  +F  AGL VK YRYYDP T G +F G L+D+   P  +I+L
Sbjct:   26 ASSWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLSSVRKAEAQLAS-KNLDKEYLPIGGLAEFARASAQLALGENCDAIQSGRFITVQTISGTGSLRVGANFLQRFYKYSRDVYLPKPSWGNHTPIFRDAGLEVKGYRYYDPKTCGFDFTGALDDISKIPEQSIIL 205          

HSP 2 Score: 22.3274 bits (46), Expect = 2.028e-45
Identity = 7/7 (100.00%), Postives = 7/7 (100.00%), Query Frame = 3
Query:  690 HACAHNP 710
            HACAHNP
Sbjct:  207 HACAHNP 213          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: AATM_BOVIN (Aspartate aminotransferase, mitochondrial OS=Bos taurus GN=GOT2 PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 8.262e-44
Identity = 87/182 (47.80%), Postives = 123/182 (67.58%), Query Frame = 1
Query:  148 SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 690
            + S +  +   P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYLPI GL +F K SA+L LG ++  +K  R  TVQ +SGTG+LR+GA FL R +     +++P+PTWGNH  +F  AG+ +++YRYYDP T G +F G +ED+   P+ +++LL
Sbjct:   29 ASSWWAHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDKEYLPIAGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPTWGNHTPIFRDAGMQLQSYRYYDPKTCGFDFTGAIEDISKIPAQSVILL 209          

HSP 2 Score: 22.3274 bits (46), Expect = 8.262e-44
Identity = 7/7 (100.00%), Postives = 7/7 (100.00%), Query Frame = 3
Query:  690 HACAHNP 710
            HACAHNP
Sbjct:  210 HACAHNP 216          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: AATM_RAT (Aspartate aminotransferase, mitochondrial OS=Rattus norvegicus GN=Got2 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 1.403e-43
Identity = 89/171 (52.05%), Postives = 117/171 (68.42%), Query Frame = 1
Query:  181 PEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY-HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 690
            P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYLPI GL DF K SA+L LG +S  +K  R  TVQ +SGTG+LRVGA FL R +     +++P+P+WGNH  +F  AG+ ++ YRYYDP T G +F G LED+   P  +++LL
Sbjct:   40 PPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAG-KNLDKEYLPIGGLADFCKASAELALGENSEVLKSGRFVTVQTISGTGALRVGASFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLL 209          

HSP 2 Score: 22.3274 bits (46), Expect = 1.403e-43
Identity = 7/7 (100.00%), Postives = 7/7 (100.00%), Query Frame = 3
Query:  690 HACAHNP 710
            HACAHNP
Sbjct:  210 HACAHNP 216          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: AATM_HORSE (Aspartate aminotransferase, mitochondrial OS=Equus caballus GN=GOT2 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.830e-43
Identity = 91/180 (50.56%), Postives = 119/180 (66.11%), Query Frame = 1
Query:  154 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY-HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 690
            S +  +   P DPILGVT AY +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYLPI GL +F K SA+L LG +S A+K  R  TVQ +SGTG+LR+GA FL R +     +++P+P+WGNH  +F  AGL +  YRYYDP T G +  G LED+   P  +I+LL
Sbjct:    2 SWWAHVEMGPPDPILGVTEAYKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDKEYLPIGGLAEFCKASAELALGENSEALKSGRYVTVQSISGTGALRIGANFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGLQLHAYRYYDPKTCGFDVTGALEDISKIPQQSIILL 180          

HSP 2 Score: 22.3274 bits (46), Expect = 1.830e-43
Identity = 7/7 (100.00%), Postives = 7/7 (100.00%), Query Frame = 3
Query:  690 HACAHNP 710
            HACAHNP
Sbjct:  181 HACAHNP 187          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: AATM_SCHPO (Aspartate aminotransferase, mitochondrial OS=Schizosaccharomyces pombe GN=aat1 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.104e-43
Identity = 90/178 (50.56%), Postives = 117/178 (65.73%), Query Frame = 1
Query:  157 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 690
            V+  +   P DPI G+T AY KD    K+NLG G YR + GKP VL  VR+AE  L++ Q   KEY PI G+  F   + KL  G    +IKD R+ + Q +SGTG+L + A FLA  Y   TIY+  PTWGNH  VF+ AGL+VK+Y+YYDPATRGL+ +G+L DL +AP G+I+LL
Sbjct:   39 VWADVPMGPPDPIFGITEAYKKDGDVKKMNLGAGTYRDDAGKPYVLPSVRQAETELLS-QKLDKEYAPITGIPSFRVQATKLAYGDVYESIKD-RLVSAQSISGTGALCIAANFLASFYPSKTIYVSDPTWGNHKNVFSRAGLTVKSYKYYDPATRGLDIKGMLSDLTSAPDGSIILL 214          

HSP 2 Score: 22.3274 bits (46), Expect = 3.104e-43
Identity = 7/7 (100.00%), Postives = 7/7 (100.00%), Query Frame = 3
Query:  690 HACAHNP 710
            HACAHNP
Sbjct:  215 HACAHNP 221          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: AATM_PIG (Aspartate aminotransferase, mitochondrial OS=Sus scrofa GN=GOT2 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 5.272e-43
Identity = 87/182 (47.80%), Postives = 122/182 (67.03%), Query Frame = 1
Query:  148 SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 690
            + S +  +   P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYLPI GL +F K SA+L LG ++  +K  R  TVQ +SGTG+LR+GA FL R +     +++P+P+WGNH  +F  AG+ + +YRYYDP T G +F G LED+   P+ +++LL
Sbjct:   29 ASSWWAHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDKEYLPIGGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGANFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLHSYRYYDPKTCGFDFTGALEDISKIPAQSVILL 209          

HSP 2 Score: 22.3274 bits (46), Expect = 5.272e-43
Identity = 7/7 (100.00%), Postives = 7/7 (100.00%), Query Frame = 3
Query:  690 HACAHNP 710
            HACAHNP
Sbjct:  210 HACAHNP 216          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: AATC_CHICK (Aspartate aminotransferase, cytoplasmic OS=Gallus gallus GN=GOT1 PE=1 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 6.873e-43
Identity = 91/185 (49.19%), Postives = 121/185 (65.41%), Query Frame = 1
Query:  154 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 690
            S+F  + RAP   +  +T  + +D    K+NLGVGAYRT+EG+P VL VVRK EQL+  D S   EYLPI+GL +F   ++++ LG DSPAI   RV +VQ L GTG+LR+GAEFL R Y+        +Y+  PTW NH  VF  AG   ++TYRY+D A RGL+ QGLL+D+  AP  +I +L
Sbjct:    4 SIFAAVPRAPPVAVFKLTADFREDGDSRKVNLGVGAYRTDEGQPWVLPVVRKVEQLIAGDGSLNHEYLPILGLPEFRANASRIALGDDSPAIAQKRVGSVQGLGGTGALRIGAEFLRRWYNGNNNTATPVYVSSPTWENHNSVFMDAGFKDIRTYRYWDAAKRGLDLQGLLDDMEKAPEFSIFIL 188          

HSP 2 Score: 22.3274 bits (46), Expect = 6.873e-43
Identity = 7/7 (100.00%), Postives = 7/7 (100.00%), Query Frame = 3
Query:  690 HACAHNP 710
            HACAHNP
Sbjct:  189 HACAHNP 195          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: AATC_BOVIN (Aspartate aminotransferase, cytoplasmic OS=Bos taurus GN=GOT1 PE=1 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 6.873e-43
Identity = 89/189 (47.09%), Postives = 122/189 (64.55%), Query Frame = 1
Query:  142 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 690
            M   S+F ++ +A    +  +T  + +D  P K+NLGVGAYRT++ +P VL VVRK EQ + ND S   EYLPI+GL +F   +++L LG DSPA+++ RV  VQCL GTG+LR+GAEFLAR Y+        +Y+  PTW NH  VF  AG   +++Y Y+D A RGL+ QG L DL  AP  +I +L
Sbjct:    1 MAPPSIFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDSQPWVLPVVRKVEQRIANDSSINHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQCLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFIAAGFKDIRSYHYWDAAKRGLDLQGFLNDLEKAPEFSIFVL 189          

HSP 2 Score: 22.3274 bits (46), Expect = 6.873e-43
Identity = 7/7 (100.00%), Postives = 7/7 (100.00%), Query Frame = 3
Query:  690 HACAHNP 710
            HACAHNP
Sbjct:  190 HACAHNP 196          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: AATM_HUMAN (Aspartate aminotransferase, mitochondrial OS=Homo sapiens GN=GOT2 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 8.951e-43
Identity = 87/171 (50.88%), Postives = 117/171 (68.42%), Query Frame = 1
Query:  181 PEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY-HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 690
            P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYLPI GL +F K SA+L LG +S  +K  R  TVQ +SGTG+LR+GA FL R +     +++P+PTWGNH  +F  AG+ ++ YRYYDP T G +F G +ED+   P  +++LL
Sbjct:   40 PPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDKEYLPIGGLAEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPTWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLL 209          

HSP 2 Score: 22.3274 bits (46), Expect = 8.951e-43
Identity = 7/7 (100.00%), Postives = 7/7 (100.00%), Query Frame = 3
Query:  690 HACAHNP 710
            HACAHNP
Sbjct:  210 HACAHNP 216          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: AATM_MOUSE (Aspartate aminotransferase, mitochondrial OS=Mus musculus GN=Got2 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.520e-42
Identity = 87/171 (50.88%), Postives = 117/171 (68.42%), Query Frame = 1
Query:  181 PEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 690
            P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYLPI GL +F K SA+L LG ++  +K  R  TVQ +SGTG+LRVGA FL R +     +++P+P+WGNH  +F  AG+ ++ YRYYDP T G +F G LED+   P  +++LL
Sbjct:   40 PPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDKEYLPIGGLAEFCKASAELALGENNEVLKSGRFVTVQTISGTGALRVGASFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLL 209          

HSP 2 Score: 22.3274 bits (46), Expect = 1.520e-42
Identity = 7/7 (100.00%), Postives = 7/7 (100.00%), Query Frame = 3
Query:  690 HACAHNP 710
            HACAHNP
Sbjct:  210 HACAHNP 216          
The following BLAST results are available for this feature:
BLAST of FC932640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
AATM_XENTR2.028e-4551.93Aspartate aminotransferase, mitochondrial OS=Xenop... [more]
AATM_BOVIN8.262e-4447.80Aspartate aminotransferase, mitochondrial OS=Bos t... [more]
AATM_RAT1.403e-4352.05Aspartate aminotransferase, mitochondrial OS=Rattu... [more]
AATM_HORSE1.830e-4350.56Aspartate aminotransferase, mitochondrial OS=Equus... [more]
AATM_SCHPO3.104e-4350.56Aspartate aminotransferase, mitochondrial OS=Schiz... [more]
AATM_PIG5.272e-4347.80Aspartate aminotransferase, mitochondrial OS=Sus s... [more]
AATC_CHICK6.873e-4349.19Aspartate aminotransferase, cytoplasmic OS=Gallus ... [more]
AATC_BOVIN6.873e-4347.09Aspartate aminotransferase, cytoplasmic OS=Bos tau... [more]
AATM_HUMAN8.951e-4350.88Aspartate aminotransferase, mitochondrial OS=Homo ... [more]
AATM_MOUSE1.520e-4250.88Aspartate aminotransferase, mitochondrial OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionC34210G08EF PostHarveN Citrus clementina cDNA clone C34210G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932640 ID=FC932640; Name=FC932640; organism=Citrus clementina; type=EST; length=710bp
GGCGCCCATTGTAACCGCCTACAGTTAAACTAACCAAACCACTCCGAGGC
CAATACTATATTAAACCCAAACATAATTTTCTCTTCACATTTTTTTCCCC
CACAAACTCTCTCATTTCATTGATTTCTTGAAAGAAATTTAATGGATTCT
GAATCAGTGTTTGGAAAGATTGTTCGTGCTCCTGAAGATCCCATTCTAGG
GGTCACTGTTGCTTATAACAAGGATACAAGCCCAGTCAAGTTGAACTTGG
GTGTTGGTGCTTACCGAACTGAGGAAGGGAAACCTCTGGTTCTGAATGTA
GTGAGAAAGGCAGAGCAGCTCTTAGTGAATGACCAGTCACGGGTCAAAGA
GTATCTTCCCATTGTTGGACTTGTGGATTTTAATAAATTGAGTGCAAAGC
TCATCCTTGGTGCTGACAGCCCTGCGATTAAAGACAACAGAGTGACCACC
GTTCAGTGCTTGTCTGGCACTGGTTCTTTGAGGGTTGGAGCTGAGTTTCT
GGCAAGGCATTATCACCAACTTACCATATATATTCCACAGCCAACATGGG
GAAACCATCCCAAAGTTTTCACTTTAGCAGGATTGTCTGTGAAGACCTAC
CGCTATTATGATCCAGCAACACGTGGGCTAAACTTCCAAGGCTTGCTGGA
GGATCTTAGGGCTGCACCATCCGGAGCTATAGTTCTTCTCATGCATGTGC
TCATAATCCA
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