FC932640

Overview
NameFC932640
Unique NameFC932640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: TYRB_SALTY (Aromatic-amino-acid aminotransferase OS=Salmonella typhimurium GN=tyrB PE=3 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 6.376e-30
Identity = 69/178 (38.76%), Postives = 98/178 (55.06%), Query Frame = 1
Query:  157 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 690
            +F K+     DPIL +   +  D+   K+NL +G Y  E+G    L  V +AE  L         YLP+ GL  +    A L+ GAD P ++  RV T+Q L G+G+L+VGA+FL R++    +++  PTW NH  +F  AG  V TY +YD AT G+ F  LL  L   P+ +IVLL
Sbjct:    1 MFQKVDAYAGDPILSLMERFKDDSRHDKVNLSIGLYYNEDGIIPQLKTVAEAEARLNAQPHGASLYLPMEGLNTYRHTIAPLLFGADHPVLQQQRVATIQTLGGSGALKVGADFLKRYFPDAGVWVSDPTWENHIAIFAGAGFEVSTYPWYDDATNGIRFNDLLATLNTLPARSIVLL 178          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: AATC_SCHPO (Aspartate aminotransferase, cytoplasmic OS=Schizosaccharomyces pombe GN=aat2 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.430e-29
Identity = 66/184 (35.87%), Postives = 107/184 (58.15%), Query Frame = 1
Query:  148 SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLT---IYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 690
            S+  F  I  A  D I  +   Y++D  P K+N+ VGAYR + GKP +L  V+KA +++    S   EYLPI GL  F K +A+++   +   + ++RV ++Q +SGTG+  + A F+   Y + T   +YI  PTW  H  ++   G++V TY Y+D   R  +++G+L  +++AP G+I LL
Sbjct:    2 SDYGFANIEEAKADAIFKLNAQYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQASFNHEYLPIAGLPRFTKAAAEVLFRPNPHLLSEDRVASMQSVSGTGANFLAASFIETFYVKHTGAHVYISNPTWPVHRTLWEKLGVTVDTYPYWDAKNRSFDYEGMLSTIKSAPEGSIFLL 185          

HSP 2 Score: 22.3274 bits (46), Expect = 1.430e-29
Identity = 7/7 (100.00%), Postives = 7/7 (100.00%), Query Frame = 3
Query:  690 HACAHNP 710
            HACAHNP
Sbjct:  186 HACAHNP 192          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: TYRB_KLEPN (Tyrosine aminotransferase OS=Klebsiella pneumoniae GN=tyrB PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.051e-28
Identity = 64/178 (35.96%), Postives = 102/178 (57.30%), Query Frame = 1
Query:  157 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 690
            +F K+     DPIL +   + +D    K+NL +G Y  ++G    L  V +AE  L  +      YLP+ G   + +  A L+ GA+  A+K NR+ ++Q + G+G+L+VGA+FL R++ +  +++  PTW NH  +F  AG  V TY ++D AT G+ F+ LL  L+  P+  IVLL
Sbjct:    1 MFQKVDAYAGDPILSLMERFKEDPRSDKVNLSIGLYYNDDGIIPQLQAVAEAEARLNAEPHGASLYLPMEGFSGYRQAIAPLLFGAEHTALKQNRIASIQTVGGSGALKVGADFLKRYFPESHVWVSDPTWENHIAIFEGAGFEVSTYPWFDKATNGVRFENLLAMLQTLPARDIVLL 178          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: PHHC_PSEAE (Aromatic-amino-acid aminotransferase OS=Pseudomonas aeruginosa GN=phhC PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.202e-24
Identity = 70/179 (39.11%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  154 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 690
            S F K+ R P DPILG+  AY  D    KL+LGVG Y+  +G   +L  V+ AEQ LV +Q   K Y+   G   F    A+L LGA SP + + R    Q   GTG+LR+  +F+A       I++  PTW  H  +F  AGL V  Y Y     R L+ + +L  L   P G +VLL
Sbjct:    2 SHFAKVARVPGDPILGLLDAYRNDPRADKLDLGVGVYKDAQGLTPILRSVKLAEQRLV-EQETTKSYVGGHGDALFAARLAELALGAASPLLLEQRADATQTPGGTGALRLAGDFIAHCLPGRGIWLSDPTWPIHETLFAAAGLKVSHYPYVSADNR-LDVEAMLAGLERIPQGDVVLL 178          

HSP 2 Score: 20.7866 bits (42), Expect = 1.202e-24
Identity = 6/7 (85.71%), Postives = 6/7 (85.71%), Query Frame = 3
Query:  690 HACAHNP 710
            HAC HNP
Sbjct:  179 HACCHNP 185          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: TYRB_PARDE (Aromatic-amino-acid aminotransferase OS=Paracoccus denitrificans GN=tyrB PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.595e-23
Identity = 60/178 (33.71%), Postives = 91/178 (51.12%), Query Frame = 1
Query:  157 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 690
            + G +     D IL +   +  D    K++LGVG Y+   G   ++  V  AEQ ++  ++  K Y  + G  +F K   +LILG     +K     T+  + GTG+LR   E        L +++  PTW NH  +    GL V+TYRY+D  TRG++F+G+  DL AA  G +VLL
Sbjct:    1 MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETET-TKTYAGLSGEPEFQKAMGELILG---DGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLL 174          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: ATTY_RHIME (Tyrosine aminotransferase OS=Rhizobium meliloti GN=tatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.982e-20
Identity = 60/178 (33.71%), Postives = 97/178 (54.49%), Query Frame = 1
Query:  157 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 690
            +F  + R  +DP+L +   + KD  P K++LGVG YR E G+  +   V+ AE+ L+  Q       P   LV  ++L    ++G D+  I+ + V  VQ   G+G+LR+ A+ +AR   +  I++  P+W NH  +F  AGL + TY ++D  ++ + F  L+  L  A SG  VLL
Sbjct:    1 MFDALARQADDPLLALIGLFRKDERPGKVDLGVGVYRDETGRTPIFRAVKAAEKRLLETQDSKAYIGPEGDLVFLDRLWE--LVGGDT--IERSHVAGVQTPGGSGALRLAADLIARMGGR-GIWLGLPSWPNHAPIFKAAGLDIATYDFFDIPSQSVIFDNLVSALEGAASGDAVLL 173          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: AATM_YEAST (Aspartate aminotransferase, mitochondrial OS=Saccharomyces cerevisiae GN=AAT1 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.589e-16
Identity = 56/177 (31.64%), Postives = 92/177 (51.98%), Query Frame = 1
Query:  154 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVN--DQSRVKEYLPIVGLVDFNKLSAKLILGADSPA-----IKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLR 660
            S   ++ RAP D +LG++  + K  +  K++L VG Y+   GK      V KA++L+ +  + ++   YLPI G  +F +   K +     P      +  +R++ VQ LSGTG+L V A+FLA  +    I+IP P+W NH  +F   G  ++  Y YY      ++  G +E L+
Sbjct:   18 SSLSRVPRAPPDKVLGLSEHFKKVKNVNKIDLTVGIYKDGWGKVTTFPSVAKAQKLIESHLELNKNLSYLPITGSKEFQENVMKFLFKESCPQFGPFYLAHDRISFVQTLSGTGALAVAAKFLAL-FISRDIWIPDPSWANHKNIFQNNGFENIYRYSYYKDGQ--IDIDGWIEQLK 191          

HSP 2 Score: 20.7866 bits (42), Expect = 2.589e-16
Identity = 6/7 (85.71%), Postives = 6/7 (85.71%), Query Frame = 3
Query:  690 HACAHNP 710
            HAC HNP
Sbjct:  211 HACCHNP 217          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: AATC2_BOVIN (Putative aspartate aminotransferase, cytoplasmic 2 OS=Bos taurus GN=GOT1L1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 49/160 (30.63%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  214 YNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTI-YIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 690
            Y +D +P K+ L      T +G+P V +VVRK    +  D S   EY P++G+  F + S  L+ G +S  I +NR   VQ +  +G+ ++GA+FL        I YI       H  +F   G +V  + ++D A   L+   LL+ ++ AP G + ++
Sbjct:   24 YKQDDNPNKMFLAYKVCMTSKGRPWVSSVVRKTRMQIAQDPSLNYEYTPVMGMKSFVQASLNLLFGKNSQVIVENRAGGVQTVGDSGAFQLGAQFLKSWCQSSQIVYIVSSQKEPHGLIFQDMGFTVYEHTFWDSAHLCLDPNMLLDVVKHAPHGCVFVI 183          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: AATC2_HUMAN (Putative aspartate aminotransferase, cytoplasmic 2 OS=Homo sapiens GN=GOT1L1 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 52/164 (31.71%), Postives = 79/164 (48.17%), Query Frame = 1
Query:  214 YNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFL-ARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLMHVL 702
            Y +D  P K+ L      T EG P V  VV+K    +  D S   EYLP +GL  F + S  L+ G  S AI +NRV  V  +  +G+ ++G +FL A H     +YI       H  VF   G +V  Y  +DP    ++   LL  +   P G ++++ +++
Sbjct:   24 YKQDDYPNKIFLAYRVCMTNEGHPWVSLVVQKTRLQISQDPSLNYEYLPTMGLKSFIQASLALLFGKHSQAIVENRVGGVHTVGDSGAFQLGVQFLRAWHKDARIVYIISSQKELHGLVFQDMGFTVYEYSVWDPKKLCMDPDILLNVVEQIPHGCVLVMGNII 187          
The following BLAST results are available for this feature:
BLAST of FC932640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
TYRB_SALTY6.376e-3038.76Aromatic-amino-acid aminotransferase OS=Salmonella... [more]
AATC_SCHPO1.430e-2935.87Aspartate aminotransferase, cytoplasmic OS=Schizos... [more]
TYRB_KLEPN2.051e-2835.96Tyrosine aminotransferase OS=Klebsiella pneumoniae... [more]
PHHC_PSEAE1.202e-2439.11Aromatic-amino-acid aminotransferase OS=Pseudomona... [more]
TYRB_PARDE2.595e-2333.71Aromatic-amino-acid aminotransferase OS=Paracoccus... [more]
ATTY_RHIME5.982e-2033.71Tyrosine aminotransferase OS=Rhizobium meliloti GN... [more]
AATM_YEAST2.589e-1631.64Aspartate aminotransferase, mitochondrial OS=Sacch... [more]
AATC2_BOVIN1.686e-1430.63Putative aspartate aminotransferase, cytoplasmic 2... [more]
AATC2_HUMAN1.093e-1331.71Putative aspartate aminotransferase, cytoplasmic 2... [more]

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Properties
Property NameValue
Genbank descriptionC34210G08EF PostHarveN Citrus clementina cDNA clone C34210G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932640 ID=FC932640; Name=FC932640; organism=Citrus clementina; type=EST; length=710bp
GGCGCCCATTGTAACCGCCTACAGTTAAACTAACCAAACCACTCCGAGGC
CAATACTATATTAAACCCAAACATAATTTTCTCTTCACATTTTTTTCCCC
CACAAACTCTCTCATTTCATTGATTTCTTGAAAGAAATTTAATGGATTCT
GAATCAGTGTTTGGAAAGATTGTTCGTGCTCCTGAAGATCCCATTCTAGG
GGTCACTGTTGCTTATAACAAGGATACAAGCCCAGTCAAGTTGAACTTGG
GTGTTGGTGCTTACCGAACTGAGGAAGGGAAACCTCTGGTTCTGAATGTA
GTGAGAAAGGCAGAGCAGCTCTTAGTGAATGACCAGTCACGGGTCAAAGA
GTATCTTCCCATTGTTGGACTTGTGGATTTTAATAAATTGAGTGCAAAGC
TCATCCTTGGTGCTGACAGCCCTGCGATTAAAGACAACAGAGTGACCACC
GTTCAGTGCTTGTCTGGCACTGGTTCTTTGAGGGTTGGAGCTGAGTTTCT
GGCAAGGCATTATCACCAACTTACCATATATATTCCACAGCCAACATGGG
GAAACCATCCCAAAGTTTTCACTTTAGCAGGATTGTCTGTGAAGACCTAC
CGCTATTATGATCCAGCAACACGTGGGCTAAACTTCCAAGGCTTGCTGGA
GGATCTTAGGGCTGCACCATCCGGAGCTATAGTTCTTCTCATGCATGTGC
TCATAATCCA
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