FC932646

Overview
NameFC932646
Unique NameFC932646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: BCHI_CHLP8 (Magnesium-chelatase 38 kDa subunit OS=Chlorobaculum parvum (strain NCIB 8327) GN=bchI PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.038e-31
Identity = 74/126 (58.73%), Postives = 93/126 (73.81%), Query Frame = 1
Query:  343 YPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRES-VVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            +PFT+IVGQEEMKL L+LN+IDP+IGGV++MG RGTGKSTTVR+L ++LP+I  V GD YN   E    M   V+ + V+K  ++      + +VDLPLGATEDRVCGTIDIEK L    +AFEPG
Sbjct:    3 FPFTSIVGQEEMKLSLILNIIDPRIGGVLVMGHRGTGKSTTVRALAEVLPLIDRVKGDIYNRTVEQYIEMESGVKGAPVLKASDVKTEKIPVPVVDLPLGATEDRVCGTIDIEKALTSGVKAFEPG 128          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: Y911_METJA (Magnesium-chelatase subunit chlI homolog OS=Methanocaldococcus jannaschii GN=MJ0911 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.249e-29
Identity = 68/126 (53.97%), Postives = 89/126 (70.63%), Query Frame = 1
Query:  340 VYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKL*RR-CQAFEPG 714
            +YPFTAIVGQE+MK  L+LN I+PKIGGV+I G++GT KST VR+L DLLP I++V G P+N DP        ++ +   K  EL  T  K+ +V+LP+GATEDRV GT+DIEK  +   +A EPG
Sbjct:    7 IYPFTAIVGQEKMKKALILNAINPKIGGVLIRGEKGTAKSTAVRALADLLPEIEIVEGCPFNCDPNGNLC---DICKEKKKRGELKTTKKKMKVVNLPIGATEDRVIGTLDIEKAIKEGIKALEPG 129          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: BCHI_RHOCA (Magnesium-chelatase 38 kDa subunit OS=Rhodobacter capsulatus GN=bchI PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.848e-24
Identity = 63/128 (49.22%), Postives = 83/128 (64.84%), Query Frame = 1
Query:  334 RPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            RPV+PF+AIVGQE+MKL LLL  +DP IGGV++ GDRGTGKST VR+L  LLP I+ V G P +S         +E+          ++      +VDLPLG +EDRV G +DIE+ + +  +AFEPG
Sbjct:   18 RPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSP-------NVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPG 138          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: BCHI_ACIRU (Magnesium-chelatase 38 kDa subunit OS=Acidiphilium rubrum GN=bchI PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.848e-24
Identity = 63/126 (50.00%), Postives = 82/126 (65.08%), Query Frame = 1
Query:  340 VYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            +YPFTAIVGQ EM   +L+  ++P +GGV+  GDRGTGKST VR+L  LLP ++ V G  Y+ DP    A+  E R     G  L+    +I +VDLPLGATEDRV G +D+E+ L    +AFEPG
Sbjct:    3 LYPFTAIVGQTEMIRAMLIATVEPTLGGVLAFGDRGTGKSTAVRALAALLPTMRAVAGCRYHCDPAARSALCPECRNRRAAG-RLASERVRIPVVDLPLGATEDRVVGALDLERALADGVKAFEPG 127          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: BCHI_RHOS4 (Magnesium-chelatase 38 kDa subunit OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchI PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.413e-24
Identity = 67/127 (52.76%), Postives = 83/127 (65.35%), Query Frame = 1
Query:  343 YPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNS-DPED-PEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            +PF+AIVGQE+MK  ++L  IDP IGGV++ GDRGTGKST VR+L  LLP+IK V G P NS  PED PE   +     + +            +VDLPLG TEDRV G +DIE+ L R  +AFEPG
Sbjct:    5 FPFSAIVGQEQMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIER---------PTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPG 122          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLD_SYNY3 (Magnesium-chelatase subunit chlD OS=Synechocystis sp. (strain PCC 6803) GN=chlD PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.563e-21
Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = 1
Query:  343 YPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESV--VKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKL*RRCQA-FEPG 714
            +P TAIVGQE +KL LLL  IDP +GG++I G RGT KS   R++  LLP I+++ G+ Y  DP++P +   +  E    V  ++L         + +PLG TEDR+ G++D+EK  ++ +A F+PG
Sbjct:   12 FPITAIVGQEAIKLALLLGAIDPGLGGIVIAGRRGTAKSVMARAIHTLLPPIEIIKGNRYQCDPKNPGSWDDDTLEKFADVPLDQLETQVIPAPFIQIPLGVTEDRLLGSVDVEKSVKQGEAVFQPG 138          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLD_ARATH (Magnesium-chelatase subunit chlD, chloroplastic OS=Arabidopsis thaliana GN=CHLD PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 8.881e-19
Identity = 51/130 (39.23%), Postives = 77/130 (59.23%), Query Frame = 1
Query:  334 RPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSI--TFSKINMVDLPLGATEDRVCGTIDIEKL*RR-CQAFEPG 714
            R  +P  A+VGQE +K  LLL  +D +IGG+ I G RGT K+   R L ++LP I+VVVG   N+DP  P+    ++ E +    + +I     K   + +PLG TEDR+ G++D+E+  +R    F+PG
Sbjct:   80 RQFFPLAAVVGQEGIKTALLLGAVDREIGGIAISGRRGTAKTVMARGLHEILPPIEVVVGSISNADPACPDEWEDDLDERIEYNADNTIKTEIVKSPFIQIPLGVTEDRLIGSVDVEESVKRGTTVFQPG 209          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLD_TOBAC (Magnesium-chelatase subunit chlD, chloroplastic OS=Nicotiana tabacum GN=CHLD PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.819e-18
Identity = 50/130 (38.46%), Postives = 72/130 (55.38%), Query Frame = 1
Query:  334 RPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAM--GIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKL*RR-CQAFEPG 714
            R  +P  A++GQ+ +K  LLL  ID +IGG+ I G RGT K+   R L  +LP I+VVVG   N+DP  P+    G+  R        +     K   V +PLG TEDR+ G++D+E+  +     F+PG
Sbjct:   77 RQYFPLAAVIGQDAIKTALLLGAIDREIGGIAICGKRGTAKTLMARGLHAILPPIEVVVGSMANADPNCPDEWEDGLADRAEYGSDGNIKTQIVKSPFVQIPLGVTEDRLIGSVDVEESVKSGTTVFQPG 206          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLD_PEA (Magnesium-chelatase subunit chlD, chloroplastic OS=Pisum sativum GN=CHLD PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.187e-17
Identity = 53/150 (35.33%), Postives = 80/150 (53.33%), Query Frame = 1
Query:  283 TEVNSVEQAQKRSKESQ---RPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAM--GIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKL*RR-CQAFEPG 714
            +E  +V QA +   ++    R  +P  A++GQ+ +K  LLL   DP+IGG+ I G RGT K+   R +  +LP I+VV G   N+DP  PE    G+  R        +     K   V +PLG TEDR+ G++D+E+  +     F+PG
Sbjct:   54 SENGAVLQASEEKLDASNYGRQYFPLAAVIGQDAIKTALLLGATDPRIGGIAISGRRGTAKTIMARGMHAILPPIEVVQGSIANADPSCPEEWEDGLYKRVEYDSDGNVKTHIIKSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPG 203          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: BCHD_HELMO (Magnesium-chelatase 67 kDa subunit OS=Heliobacillus mobilis GN=bchD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.037e-16
Identity = 53/131 (40.46%), Postives = 75/131 (57.25%), Query Frame = 1
Query:  346 PFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMV-------DLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            P  AI GQE +KL L L  +DP + GV I G RGTGK+   R L  LLP I  + G P + +P +P +     RE     EE  ++ S++ +V       ++PLGATEDR+ G ID+E+ L    +A++PG
Sbjct:    7 PLAAITGQEAVKLALTLAAVDPGLKGVAIAGRRGTGKTVLARGLRHLLPPIDQLEGCPCHCNPAEPHSWCNRCRERFT--EESGLSDSEVPVVQRNAPFSEVPLGATEDRLLGAIDVEQSLAGGVRAWQPG 135          
The following BLAST results are available for this feature:
BLAST of FC932646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
BCHI_CHLP82.038e-3158.73Magnesium-chelatase 38 kDa subunit OS=Chlorobaculu... [more]
Y911_METJA4.249e-2953.97Magnesium-chelatase subunit chlI homolog OS=Methan... [more]
BCHI_RHOCA1.848e-2449.22Magnesium-chelatase 38 kDa subunit OS=Rhodobacter ... [more]
BCHI_ACIRU1.848e-2450.00Magnesium-chelatase 38 kDa subunit OS=Acidiphilium... [more]
BCHI_RHOS42.413e-2452.76Magnesium-chelatase 38 kDa subunit OS=Rhodobacter ... [more]
CHLD_SYNY35.563e-2141.73Magnesium-chelatase subunit chlD OS=Synechocystis ... [more]
CHLD_ARATH8.881e-1939.23Magnesium-chelatase subunit chlD, chloroplastic OS... [more]
CHLD_TOBAC9.819e-1838.46Magnesium-chelatase subunit chlD, chloroplastic OS... [more]
CHLD_PEA2.187e-1735.33Magnesium-chelatase subunit chlD, chloroplastic OS... [more]
BCHD_HELMO7.037e-1640.46Magnesium-chelatase 67 kDa subunit OS=Heliobacillu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34210H02EF PostHarveN Citrus clementina cDNA clone C34210H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932646 ID=FC932646; Name=FC932646; organism=Citrus clementina; type=EST; length=725bp
GATGTAATCTGTGATGGTCAACAAAACCAGTGAACACAAACTCTCTCACC
CTAGTAACAGTAACACCTACATTTGCGCACGGGCATGGCGTCCGTGTTAG
GAACTCGTTCTTCCTCTGCAATCTTGGCTTCTCGCCCTCTCTCTTTTCCA
GCATCAAACTCAAAGTCTGCCATCTCCTCTCTCTCCTTAAACCCCGGGCA
GAATTATGGAAGGAGGTTTTATGGGGGGATTGGGATTGAAGAAAAGATGG
GGCGGGCTCTGTTTGCAGTTACCAATGTTGCCACTGAGGTTAACTCTGTT
GAGCAGGCCCAGAAGAGATCCAAGGAAAGCCAGAGGCCGGTGTATCCATT
TACTGCAATAGTGGGACAGGAAGAGATGAAATTGTGCCTTTTGTTAAATG
TGATTGATCCCAAAATTGGGGGTGTTATGATTATGGGTGATAGAGGAACG
GGGAAATCCACCACTGTCAGGTCCTTGGTAGATTTACTCCCCGTAATCAA
GGTAGTTGTCGGTGACCCATATAACTCAGATCCAGAAGATCCAGAGGCCA
TGGGTATTGAAGTCAGAGAGTCTGTCGTGAAAGGGGAGGAGCTCTCCATT
ACATTCAGTAAAATCAACATGGTTGATTTGCCATTGGGTGCTACAGAAGA
CAGGGTCTGTGGGACGATTGACATTGAGAAGCTCTAACGGAGGTGTCAAG
CATTTGAGCCTGGCTTCTGCTAAGC
back to top