FC932648

Overview
NameFC932648
Unique NameFC932648
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15546 contig Ccv1_Contig15546:1..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932648 vs. ExPASy Swiss-Prot
Match: 1433G_SHEEP (14-3-3 protein gamma (Fragments) OS=Ovis aries GN=YWHAG PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.642e-34
Identity = 53/102 (51.96%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  428 SFSKCWKGDYYRYLAEFKFGDEKKEAAANSMKXXXXXXXXXXXDLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLL 733
            SF    KGDYYRYLAE   G+++     +S K            + PTHPIRLGLALN+SVFYYEI             AFD+AI+ELDTLNE+SYKDSTL+
Sbjct:   48 SFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEI------------TAFDDAIAELDTLNEDSYKDSTLI 137          

HSP 2 Score: 67.781 bits (164), Expect = 9.642e-34
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 3
Query:  177 AMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQK 308
            AMKNV +L+  L+ EERNLLSV YKNV+GARR+SWR++SSIEQK
Sbjct:    3 AMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQK 46          
BLAST of FC932648 vs. ExPASy Swiss-Prot
Match: 1433B_SOYBN (14-3-3-like protein B (Fragment) OS=Glycine max GN=GF14B PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.102e-31
Identity = 70/109 (64.22%), Postives = 82/109 (75.23%), Query Frame = 2
Query:  419 ASYSFSKCW----KGDYYRYLAEFKFGDEKKEAAANSMKXXXXXXXXXXXDLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLL 733
            AS S SK +    KGDY+RYLAEFK GDE+K A  ++M            DLPPTHPIRLGLALNFSVFYYEI+N  ++AC +AKQAF+EAI+ELDTL EESYKDSTL+
Sbjct:  117 ASASESKVFYLKMKGDYHRYLAEFKVGDERKTATEDTMLSYKAAQDIASADLPPTHPIRLGLALNFSVFYYEILNQSDKACAMAKQAFEEAIAELDTLGEESYKDSTLI 225          

HSP 2 Score: 131.724 bits (330), Expect = 3.964e-30
Identity = 66/121 (54.55%), Postives = 90/121 (74.38%), Query Frame = 3
Query:   96 ASSKERENFVYVAKLAEQAERYDEMVDAMKNVAKLDV---ELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHLIPSASAGK 449
            A    RE +VY+A ++EQAERY+EMV+ M+ V        ELTVEERNLLSV YKNVIG+ RA+WRI+SSIEQKEE + N+ +   +K YR KVE+EL+ +C  I++++D +L+PSASA +
Sbjct:    1 AEGLNREQYVYLANVSEQAERYEEMVEFMQKVVVGSTPASELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNDDHVSLVKHYRSKVENELTQVCATILSLLDSNLVPSASASE 121          
BLAST of FC932648 vs. ExPASy Swiss-Prot
Match: U4976_SOYBN (UPF0497 membrane protein 6 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.788e-14
Identity = 38/45 (84.44%), Postives = 44/45 (97.78%), Query Frame = 3
Query:   93 MASSKERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEER 227
            MA+SK+RENFVY+AKLAEQAERY+EMV++MKNVA LDVELTVEER
Sbjct:    1 MAASKDRENFVYIAKLAEQAERYEEMVESMKNVANLDVELTVEER 45          
The following BLAST results are available for this feature:
BLAST of FC932648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
1433G_SHEEP9.642e-3451.9614-3-3 protein gamma (Fragments) OS=Ovis aries GN=... [more]
1433B_SOYBN2.102e-3164.2214-3-3-like protein B (Fragment) OS=Glycine max GN... [more]
U4976_SOYBN1.788e-1484.44UPF0497 membrane protein 6 OS=Glycine max PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC34210H04EF PostHarveN Citrus clementina cDNA clone C34210H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932648 ID=FC932648; Name=FC932648; organism=Citrus clementina; type=EST; length=738bp
GGTCTTTATGTAAACTGTTGTAAAGGCGAAGAAAGAGAGAGGAATCTATT
GAGACTACAGTAAAACCCTAATCTCTTCCTCGGAGATCGGCCATGGCTTC
CTCTAAAGAACGCGAAAACTTCGTCTACGTCGCCAAGCTCGCTGAACAAG
CCGAGCGCTACGACGAGATGGTGGATGCGATGAAAAATGTTGCGAAGCTT
GATGTGGAATTGACGGTTGAGGAGCGCAACTTGCTCTCTGTTGGCTACAA
GAATGTAATTGGTGCTCGAAGAGCATCGTGGAGGATACTTTCGTCAATTG
AGCAAAAGGAAGAAGCGAAAGGGAATGAAGTGAATGCAAAGCGGATCAAG
GAGTATAGGCAAAAGGTTGAATCTGAATTGTCGGACATTTGCAATGATAT
CATGACTGTCATTGATGAGCATCTTATTCCTTCAGCAAGTGCTGGAAAGG
AGATTATTATCGGTACCTTGCTGAATTCAAGTTTGGCGATGAGAAGAAAG
AGGCTGCTGCTAATTCAATGAAAGCATATGAGACAGCTACCACTGCTGCA
GAGGCTGATTTGCCACCTACACATCCCATCCGATTGGGTTTGGCTCTGAA
TTTCTCTGTCTTTTATTATGAGATCATGAATTCTCCTGAAAGGGCTTGCC
ATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCCGAGCTGGACACCCTC
AACGAGGAGTCCTACAAAGACAGCACCTTATTATGCAG
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