FC932651
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932651 vs. ExPASy Swiss-Prot
Match: TOP1_XENLA (DNA topoisomerase 1 OS=Xenopus laevis GN=top1 PE=2 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 6.243e-46 Identity = 104/221 (47.06%), Postives = 141/221 (63.80%), Query Frame = 2 Query: 44 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAXTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 703 ++FDF GKDSI+Y N V VE V+K + F K+ +DDLFD+L+T+ LN HL++LM GLTAKVFRTYNASITL L++ T D +V KI Y RAN+ VAI+CNHQR KT M L KI+ K L D R + ++ K + +D K+ +A++R ++ K+E +E+ K +ALGTSK+NYLDPRI+VAWCK++ VPI Sbjct: 581 VEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPDDDLFDRLNTSILNKHLQDLMEGLTAKVFRTYNASITLQQQLDELTNSDDNVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQGKIDAKKDQLADARREF-KSAKADAKVRRDEKTKKLVESKKKAVQR----IEEQLMKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKKYGVPI 796
BLAST of FC932651 vs. ExPASy Swiss-Prot
Match: TOP1_DROME (DNA topoisomerase 1 OS=Drosophila melanogaster GN=Top1 PE=1 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 6.243e-46 Identity = 107/225 (47.56%), Postives = 137/225 (60.89%), Query Frame = 2 Query: 38 NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDR--AKKGKPPLMKDSDGKRKRNLAPEALERKMAXTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 703 N + FDF GKDSI+Y N VEVE V+K + F KK+ DDLFD+L+T LN HLKELM GLTAKVFRTYNAS TL L+ T V K+ Y RAN+ VAI+CNHQR+V K+H M L EKI+ + ++ + KKGK LER +++K+E +++ KT+ALGTSK+NYLDPRI+VAWCK+H+VPI Sbjct: 745 NVVVFDFPGKDSIRYYNEVEVEKRVFKNLELFMEHKKEGDDLFDRLNTQVLNEHLKELMEGLTAKVFRTYNASKTLQSQLDLLTDPSATVPEKLLAYNRANRAVAILCNHQRSVPKSHEKSMENLKEKIKAKREAIEKCESEYHSRDEKKGK------------------QLER----LRDQLKKLELQETDRDENKTIALGTSKLNYLDPRISVAWCKKHDVPI 947
BLAST of FC932651 vs. ExPASy Swiss-Prot
Match: TOP1_DICDI (DNA topoisomerase 1 OS=Dictyostelium discoideum GN=top1 PE=3 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 5.285e-45 Identity = 110/272 (40.44%), Postives = 157/272 (57.72%), Query Frame = 2 Query: 2 TLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAV--KIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGK------------PPLM-------KDSDGKR--------------KRNLAPEA---LERKMAXTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 703 +L+V +++ N + DFLGKDS++Y+NTV++ YK + F GKK D LFD L +LN HLK+ M GL+AKVFRTYNASITL L+K ++ KI Y R N+EVAI+CNHQ+ K + MS++ EKI++L+ + R+ + + K + P L+ KD D ++ K P+A ++ K+A +I+K E K++LKTVALGTSKINYLDPRITVAWCK+++VP+ Sbjct: 599 SLRVEHIKLESNNTITLDFLGKDSMRYLNTVQIREDAYKVLKTFVKGKKPTDLLFDSLTVTQLNNHLKKQMTGLSAKVFRTYNASITLQKELDKMDTKEFQSIDEKILFYNRCNREVAILCNHQKAPPKNLAETMSKIDEKIQELRDLQDLCRIKIGKTPKSQQEDIESREAERLPKLIQLAITNKKDKDKEKTDKEISFDVKAAFEKSRTLPDAKGKIKEKIAKYEEQIKKQEILKTGKDELKTVALGTSKINYLDPRITVAWCKKNKVPV 870
BLAST of FC932651 vs. ExPASy Swiss-Prot
Match: TOP1M_MOUSE (DNA topoisomerase I, mitochondrial OS=Mus musculus GN=Top1mt PE=2 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.538e-44 Identity = 100/221 (45.25%), Postives = 135/221 (61.09%), Query Frame = 2 Query: 44 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAXTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 703 ++ DFLGKDSI+Y N V VE V++ + F K DDLFD L T+ LN HL++LM GLTAKVFRTYNAS+TL L T + V K+ Y RAN+ VA++CNHQR V KT M L +KIE K + + +V+L +K + L D K K L +R++ ++ ++ KE+ K VALGT+K+NYLDPRI++AWCKR VP+ Sbjct: 354 VELDFLGKDSIRYKNHVTVEKLVFQNLQHFMEDKDPRDDLFDALTTSSLNKHLQDLMEGLTAKVFRTYNASVTLQEQLRVLTRAEDSVTCKVLAYNRANRAVAVLCNHQRAVPKTFEKSMQTLQKKIETKKAQVAEAQVEL---QKAETDLRMRGDSKPKSFLQK---QRRLLKLEEQLARLCAKATDKEENKQVALGTAKLNYLDPRISIAWCKRFGVPV 568
BLAST of FC932651 vs. ExPASy Swiss-Prot
Match: TOP1M_RAT (DNA topoisomerase I, mitochondrial OS=Rattus norvegicus GN=Top1mt PE=2 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 5.844e-44 Identity = 101/221 (45.70%), Postives = 134/221 (60.63%), Query Frame = 2 Query: 44 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAXTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 703 ++ DFLGKDSI+Y N V VE V++ + F K DDLFD L T+ LN HL++LM GLTAKVFRTYNASITL L T + + K+ Y RAN+ VA++CNHQR + KT M L +KIE K + + +V+L +K + L D K K L + K+ A++ D KE+ K VALGT+K+NYLDPRI++AWCKR VP+ Sbjct: 354 VELDFLGKDSIRYKNHVTVEKLVFQNLQHFMEDKDPRDDLFDALTTSSLNKHLQDLMEGLTAKVFRTYNASITLQEQLRVLTRAEDSLTCKVLAYNRANRAVAVLCNHQRAIPKTFEESMQTLQKKIETKKAQVAEAQVEL---QKAETDLRMRGDSKSKSFLQKQQRLLKLEEQLARLCTKATD---KEENKQVALGTAKLNYLDPRISIAWCKRFGVPV 568
BLAST of FC932651 vs. ExPASy Swiss-Prot
Match: TOP1_CANAL (DNA topoisomerase 1 OS=Candida albicans GN=TOP1 PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 4.056e-37 Identity = 105/308 (34.09%), Postives = 157/308 (50.97%), Query Frame = 2 Query: 2 TLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKI-------------------------------------EDLKGV------------LKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERK----------MAXTNAKIEKMERDMKT--------------KEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 703 +L+ +V PPNK+ FD LGKDSI++ VEV+ V+K + F+ KQ DDLFD+++ + +N L+ M GLTAKVFRTYNAS T+ ++ +G VA K+ + AN+ VAI+CNHQRTVSKTH + R+ +K+ ED++ + K L D ++ K PL+ +SD K K + E LE++ + NA +EK+++ ++T KED V+LGTSK+NY+DPR+ V + K+ +VPI Sbjct: 447 SLRYEHVTLKPPNKVIFDLLGKDSIRFYQEVEVDKQVFKNLRIFKKSPKQPGDDLFDRINPSLVNRQLQNYMKGLTAKVFRTYNASKTMQDQIDIIENEGTVAEKVAKFNAANRTVAILCNHQRTVSKTHGDSVQRINDKLKKFMWQKIRLKKMILQLEPKLKKKDSKYFEEIDDLIKEDIEHIHHTIIKRQREQAKKKLERDNEKLKLEGKPLLTESDIKDKLDKIDE-LEKEYQKELKTGKPIVTKNATVEKLKQQIETLENRILNVSIQLKDKEDNSEVSLGTSKMNYIDPRLIVMFSKKFDVPI 753
BLAST of FC932651 vs. ExPASy Swiss-Prot
Match: TOP1_YEAST (DNA topoisomerase 1 OS=Saccharomyces cerevisiae GN=TOP1 PE=1 SV=2) HSP 1 Score: 153.68 bits (387), Expect = 9.036e-37 Identity = 107/308 (34.74%), Postives = 161/308 (52.27%), Query Frame = 2 Query: 2 TLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---------------KGVLK----------DLRVD---------LDR-AKKGKPPLMKDSDGKR--KRNLAPEA-LERKMAXTNAKIEKMERDMKT-----------------------------------KEDLKTVALGTSKINYLDPRITVAWCKRHEVPI 703 +L+ +V PPN + FDFLGKDSI++ VEV+ V+K + F+ KQ LFD+LD + LN +L+ MPGLTAKVFRTYNAS T+ L+ G VA KI Y AN+ VAI+CNHQRTV+K H+ + + +I++L K +LK DL + +DR +K + ++++D ++ K L PE+ L+ + + K ++ E+++KT KE+ V+LGTSKINY+DPR++V +CK+++VPI Sbjct: 437 SLRYEHVTLKPPNTVIFDFLGKDSIRFYQEVEVDKQVFKNLTIFKRPPKQPGHQLFDRLDPSILNKYLQNYMPGLTAKVFRTYNASKTMQDQLDLIPNKGSVAEKILKYNAANRTVAILCNHQRTVTKGHAQTVEKANNRIQELEWQKIRCKRAILQLDKDLLKKEPKYFEEIDDLTKEDEATIHKRIIDREIEKYQRKFVRENDKRKFEKEELLPESQLKEWLEKVDEKKQEFEKELKTGEVELKSSWNSVEKIKAQVEKLEQRIQTSSIQLKDKEENSQVSLGTSKINYIDPRLSVVFCKKYDVPI 744
BLAST of FC932651 vs. ExPASy Swiss-Prot
Match: TOP1_SCHPO (DNA topoisomerase 1 OS=Schizosaccharomyces pombe GN=top1 PE=1 SV=2) HSP 1 Score: 153.68 bits (387), Expect = 9.036e-37 Identity = 107/307 (34.85%), Postives = 160/307 (52.12%), Query Frame = 2 Query: 2 TLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD-RAKKGKPPLMKDSDG---------------------KRK-------------RNLAPEA-LERKMAXTNAKIEKMERDMKTK---------------------------------EDLKTVALGTSKINYLDPRITVAWCKRHEVPI 703 +L+ +V PP + FDFLGKDSI+Y N VEV+ V+K + F+ KK+ D +FD+L T LN +L LM GL+AKVFRTYNAS T+ L K + +A KI Y RAN+ VAI+CNHQR+V+K H QM R E+I+ L + L+ + ++L+ + K KP L+ +G K+K +++ PE+ LE ++ + + ++ ++K+K ++ KT ALGTSKINY+DPR+T ++ KR +VPI Sbjct: 484 SLRYEHVTLKPPRTVVFDFLGKDSIRYYNEVEVDPQVFKNLKIFKRPPKKEGDLIFDRLSTNSLNKYLTSLMDGLSAKVFRTYNASYTMAEELKKMPKNLTLADKILFYNRANRTVAILCNHQRSVTKNHDVQMERFAERIKALQYQRMRLRKMMLNLEPKLAKSKPELLAKEEGITDSWIVKHHETLYELEKEKIKKKFDRENEKLAAEDPKSVLPESELEVRLKAADELKKALDAELKSKKVDPGRSSMEQLEKRLNKLNERINVMRTQMIDKDENKTTALGTSKINYIDPRLTYSFSKREDVPI 790
BLAST of FC932651 vs. ExPASy Swiss-Prot
Match: TOP1_USTMA (DNA topoisomerase 1 OS=Ustilago maydis GN=TOP1 PE=3 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11 Identity = 49/160 (30.63%), Postives = 77/160 (48.12%), Query Frame = 2 Query: 2 TLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELP-VYKAIGQFQTG------------KKQNDDLF----------DKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGML-----------NKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVS 379 +L+ + + P+ + +FLGKDS+++ +++ P V+K I F KK +D +F L +N L + M GL+AKVFRTYNAS+T G+L N + + Y AN++VAI+CNHQ+TV+ Sbjct: 459 SLRCEHAQIKMPDTIHLEFLGKDSMKFEEDLKITNPDVFKNIAMFLKSNGMKDKSGNYVRKKPSDPIFCAPESGSGKMQPLQPNSVNQFLSKYMKGLSAKVFRTYNASVTFQGLLEQTEEWLKSRPNAAEREINQTNLRLAYNEANRQVAILCNHQKTVN 618 The following BLAST results are available for this feature:
BLAST of FC932651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC932651 ID=FC932651; Name=FC932651; organism=Citrus clementina; type=EST; length=703bpback to top |