BG732219

Overview
NameBG732219
Unique NameBG732219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length215
Libraries
Library NameType
Citrus sinensis flavedo cellscdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9834 contig Csv1_Contig9834:142..356. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: CALM_CANAL (Calmodulin OS=Candida albicans GN=CMD1 PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.392e-25
Identity = 55/71 (77.46%), Postives = 63/71 (88.73%), Query Frame = 2
Query:    2 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRV 214
            KD DG ITTKELGTVMRSLGQNP+E+EL DMINEVD + +G+IDFPEFL +MARKMKDTDSE E+ EAF+V
Sbjct:   22 KDSDGKITTKELGTVMRSLGQNPSESELTDMINEVDVNSDGSIDFPEFLTMMARKMKDTDSEAEIAEAFKV 92          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: CML11_ARATH (Calmodulin-like protein 11 OS=Arabidopsis thaliana GN=CML11 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.050e-25
Identity = 52/71 (73.24%), Postives = 63/71 (88.73%), Query Frame = 2
Query:    2 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRV 214
            KDGDGCIT  EL TV+RSL QNPTE ELQDMI E+D+DGNGTI+F EFLNLMA ++++TD++EELKEAF+V
Sbjct:   45 KDGDGCITADELATVIRSLDQNPTEQELQDMITEIDSDGNGTIEFSEFLNLMANQLQETDADEELKEAFKV 115          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: CML8_ARATH (Calmodulin-like protein 8 OS=Arabidopsis thaliana GN=CML8 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.428e-24
Identity = 50/71 (70.42%), Postives = 63/71 (88.73%), Query Frame = 2
Query:    2 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRV 214
            KDGDGCIT +EL TV+RSL QNPTE EL D+I E+D+D NGTI+F EFLNLMA+K++++D+EEELKEAF+V
Sbjct:   23 KDGDGCITVEELATVIRSLDQNPTEQELHDIITEIDSDSNGTIEFAEFLNLMAKKLQESDAEEELKEAFKV 93          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: CML2_ORYSJ (Putative calmodulin-like protein 2 OS=Oryza sativa subsp. japonica GN=CML2 PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.790e-23
Identity = 49/71 (69.01%), Postives = 64/71 (90.14%), Query Frame = 2
Query:    2 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRV 214
            KDGDG IT+KELGTVM SLGQ+PTEAEL+ M+ EVDADG+G+I+F EFL L+ARK++DT +E++++EAFRV
Sbjct:   21 KDGDGTITSKELGTVMGSLGQSPTEAELKKMVEEVDADGSGSIEFEEFLGLLARKLRDTGAEDDIREAFRV 91          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: CML3_ORYSJ (Calmodulin-like protein 3 OS=Oryza sativa subsp. japonica GN=CML3 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.444e-23
Identity = 48/71 (67.61%), Postives = 64/71 (90.14%), Query Frame = 2
Query:    2 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRV 214
            KDGDG IT+KELGTVM SLGQ+PTEAEL+ M+ EVDADG+G+I+F EFL L+ARK++DT +E+++++AFRV
Sbjct:   21 KDGDGTITSKELGTVMGSLGQSPTEAELKKMVEEVDADGSGSIEFEEFLGLLARKLRDTGAEDDIRDAFRV 91          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: CML4_ORYSJ (Calmodulin-like protein 4 OS=Oryza sativa subsp. japonica GN=CML4 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.336e-22
Identity = 49/71 (69.01%), Postives = 56/71 (78.87%), Query Frame = 2
Query:    2 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRV 214
            K+GDGCIT +EL  V RSLG  PT+ EL DM+ EVD DGNG IDF EFL+L+ARKMKD D +EELKEAF V
Sbjct:   21 KNGDGCITLEELAAVTRSLGLEPTDQELNDMMREVDTDGNGIIDFQEFLSLIARKMKDGDGDEELKEAFEV 91          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: CALL_CAEEL (Calmodulin-like protein OS=Caenorhabditis elegans GN=cal-1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.032e-20
Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 2
Query:    2 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRV 214
            KDG+G I+TKELG  MRSLGQNPTE E+ +MINEVD DGNG I+FPEF  +M R MK+TDS E ++EAFRV
Sbjct:   35 KDGNGTISTKELGIAMRSLGQNPTEQEILEMINEVDIDGNGQIEFPEFCVMMKRMMKETDS-EMIREAFRV 104          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: CABO_LOLPE (Squidulin OS=Loligo pealeii PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.141e-19
Identity = 43/70 (61.43%), Postives = 60/70 (85.71%), Query Frame = 2
Query:    5 DGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRV 214
            DGDG IT+KEL +VM+SLG+ P++AEL++MI EVD DGNGTI++ EF+ +MA++M  TD E+E++EAFRV
Sbjct:   22 DGDGQITSKELRSVMKSLGRTPSDAELEEMIREVDTDGNGTIEYAEFVEMMAKQMGPTDPEKEMREAFRV 91          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: CALL_DROME (Calmodulin-related protein 97A OS=Drosophila melanogaster GN=And PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.947e-19
Identity = 41/71 (57.75%), Postives = 60/71 (84.51%), Query Frame = 2
Query:    2 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRV 214
            K+G G I T+ELGT+MR+LGQNPTEAELQD+I E + + NG ++F EF  +MA++M++TD+EEE++EAF++
Sbjct:   21 KEGTGKIATRELGTLMRTLGQNPTEAELQDLIAEAENNNNGQLNFTEFCGIMAKQMRETDTEEEMREAFKI 91          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: TNNC1_RABIT (Troponin C, slow skeletal and cardiac muscles OS=Oryctolagus cuniculus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.337e-19
Identity = 47/71 (66.20%), Postives = 55/71 (77.46%), Query Frame = 2
Query:   11 DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRV 214
            DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+
Sbjct:   33 DGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRM 103          
The following BLAST results are available for this feature:
BLAST of BG732219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
CALM_CANAL1.392e-2577.46Calmodulin OS=Candida albicans GN=CMD1 PE=3 SV=2[more]
CML11_ARATH4.050e-2573.24Calmodulin-like protein 11 OS=Arabidopsis thaliana... [more]
CML8_ARATH3.428e-2470.42Calmodulin-like protein 8 OS=Arabidopsis thaliana ... [more]
CML2_ORYSJ3.790e-2369.01Putative calmodulin-like protein 2 OS=Oryza sativa... [more]
CML3_ORYSJ8.444e-2367.61Calmodulin-like protein 3 OS=Oryza sativa subsp. j... [more]
CML4_ORYSJ9.336e-2269.01Calmodulin-like protein 4 OS=Oryza sativa subsp. j... [more]
CALL_CAEEL1.032e-2069.01Calmodulin-like protein OS=Caenorhabditis elegans ... [more]
CABO_LOLPE1.141e-1961.43Squidulin OS=Loligo pealeii PE=1 SV=1[more]
CALL_DROME1.947e-1957.75Calmodulin-related protein 97A OS=Drosophila melan... [more]
TNNC1_RABIT4.337e-1966.20Troponin C, slow skeletal and cardiac muscles OS=O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCs-12d Citrus sinensis flavedo cells Citrus sinensis cDNA clone Cs-12d similar to Calmodulin, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BG732219 ID=BG732219; Name=BG732219; organism=Citrus sinensis; type=EST; length=215bp
GAAGGACGGCGACGGTTGCATTACCACCAAGGAGCTTGGCACTGTTATGA
GGTCACTGGGTCAGAACCCCACTGAGGCTGAGCTCCAGGACATGATCAAT
GAAGTGGATGCTGATGGTAATGGAACTATTGATTTTCCTGAATTCCTAAA
CCTCATGGCCAGGAAGATGAAGGATACCGACTCTGAGGAGGAGCTGAAAG
AGGCCTTCCGGGTTT
back to top