BG733597

Overview
NameBG733597
Unique NameBG733597
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Libraries
Library NameType
Citrus sinensis flavedo cellscdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BG733597 vs. ExPASy Swiss-Prot
Match: COPD_BOVIN (Coatomer subunit delta OS=Bos taurus GN=ARCN1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.371e-28
Identity = 59/88 (67.05%), Postives = 75/88 (85.23%), Query Frame = 1
Query:    1 RIRIEGLLAAFTKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAF 264
            R RIEGLLAAF KL+ TGKQHT+VETE+VRYVYQP+E LY++L+T K SNILEDLETLRL S+++PEY  +L+E+ I +  F+L+FAF
Sbjct:   26 RTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAF 113          
BLAST of BG733597 vs. ExPASy Swiss-Prot
Match: COPD_CAEEL (Probable coatomer subunit delta OS=Caenorhabditis elegans GN=C13B9.3 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.517e-22
Identity = 52/93 (55.91%), Postives = 68/93 (73.12%), Query Frame = 1
Query:    1 RIRIEGLLAAFTKLVGTGK-----QHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAF 264
            R R+EGL+ AF KL+G  K     QHT+VET++VRYVY P++ +YL+LVT K SNILEDLETLRL  +++PEY  S +E  I    F+L+FAF
Sbjct:   27 RSRLEGLVDAFPKLIGNEKEAATRQHTFVETDSVRYVYHPLDNIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEILAHDFDLIFAF 119          
BLAST of BG733597 vs. ExPASy Swiss-Prot
Match: COPD_SCHPO (Coatomer subunit delta OS=Schizosaccharomyces pombe GN=ret2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.421e-19
Identity = 45/88 (51.14%), Postives = 66/88 (75.00%), Query Frame = 1
Query:    1 RIRIEGLLAAFTKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAF 264
            R+R+E LL++F  LV    Q+T VE++NVR+VYQP++ LY++L+TN QSNIL+D++TL LLS++V     SL+E  I + AFE+  AF
Sbjct:   26 RVRVESLLSSFPALVSEKSQNTTVESDNVRFVYQPLDELYIVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEYAFEIFTAF 113          
BLAST of BG733597 vs. ExPASy Swiss-Prot
Match: COPD_YEAST (Coatomer subunit delta OS=Saccharomyces cerevisiae GN=RET2 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 9.539e-14
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    7 RIEGLLAAFTKLVGT-GKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAF 264
            R+  LL+ F  LV      HT+VE ++VRYVY+P +  Y++L+TN+QSNI++DL TL L S+ +  Y  S  +  I   AFE+L +F
Sbjct:   28 RVLELLSNFQNLVSEISSDHTFVEDKHVRYVYRPFDNYYIILITNRQSNIIKDLATLNLFSQTINSYLSSFQDQEIFHNAFEILSSF 114          
The following BLAST results are available for this feature:
BLAST of BG733597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
COPD_BOVIN1.371e-2867.05Coatomer subunit delta OS=Bos taurus GN=ARCN1 PE=1... [more]
COPD_CAEEL9.517e-2255.91Probable coatomer subunit delta OS=Caenorhabditis ... [more]
COPD_SCHPO4.421e-1951.14Coatomer subunit delta OS=Schizosaccharomyces pomb... [more]
COPD_YEAST9.539e-1443.68Coatomer subunit delta OS=Saccharomyces cerevisiae... [more]

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Properties
Property NameValue
Genbank descriptionCs-15c Citrus sinensis flavedo cells Citrus sinensis cDNA clone Cs-15c, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BG733597 ID=BG733597; Name=BG733597; organism=Citrus sinensis; type=EST; length=264bp
CGAATCAGGATTGAAGGTCTTCTTGCTGCTTTTACTAAGTTGGTTGGCAC
TGGAAAACAGCATACATATGTTGAGACTGAAAATGTGCGCTATGTTTACC
AGCCAATAGAAGCTTTGTATCTGCTGCTTGTGACAAACAAACAGAGCAAC
ATCCTTGAAGATTTGGAAACTCTGAGGCTTCTCTCCAAGCTTGTACCTGA
ATATTCATACTCTCTAGATGAGGATGGTATCTGCAAGACAGCTTTTGAGC
TGCTTTTTGCATTC
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