BG733602 | Citrus Genome Database

Overview


Name	BG733602
Unique Name	BG733602
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	194

Libraries


Library Name	Type
Citrus sinensis flavedo cells	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of BG733602 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.266e-21
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 2

Query:    2 DSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 157
            DSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERE
Sbjct:   17 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68

HSP 2 Score: 25.0238 bits (53), Expect = 3.266e-21
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 3

Query:  165 ITIDIALWKF 194
            ITIDIALWKF
Sbjct:   71 ITIDIALWKF 80

BLAST of BG733602 vs. ExPASy Swiss-Prot
Match: EF1A4_OSCTI (Elongation factor 1-alpha 4 OS=Oscheius tipulae GN=eft-4 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.266e-21
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 2

Query:    2 DSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 157
            DSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERE
Sbjct:   17 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68

HSP 2 Score: 25.0238 bits (53), Expect = 3.266e-21
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 3

Query:  165 ITIDIALWKF 194
            ITIDIALWKF
Sbjct:   71 ITIDIALWKF 80

BLAST of BG733602 vs. ExPASy Swiss-Prot
Match: EF1A3_OSCTI (Elongation factor 1-alpha 3 OS=Oscheius tipulae GN=eft-3 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.266e-21
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 2

Query:    2 DSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 157
            DSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERE
Sbjct:   18 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 69

HSP 2 Score: 25.0238 bits (53), Expect = 3.266e-21
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 3

Query:  165 ITIDIALWKF 194
            ITIDIALWKF
Sbjct:   72 ITIDIALWKF 81

BLAST of BG733602 vs. ExPASy Swiss-Prot
Match: EF1A2_OSCTI (Elongation factor 1-alpha 2 OS=Oscheius tipulae GN=eft-2 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.266e-21
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 2

Query:    2 DSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 157
            DSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERE
Sbjct:   17 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68

HSP 2 Score: 25.0238 bits (53), Expect = 3.266e-21
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 3

Query:  165 ITIDIALWKF 194
            ITIDIALWKF
Sbjct:   71 ITIDIALWKF 80

BLAST of BG733602 vs. ExPASy Swiss-Prot
Match: EF1A1_OSCTI (Elongation factor 1-alpha 1 OS=Oscheius tipulae GN=eft-1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.266e-21
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 2

Query:    2 DSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 157
            DSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERE
Sbjct:   17 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68

HSP 2 Score: 25.0238 bits (53), Expect = 3.266e-21
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 3

Query:  165 ITIDIALWKF 194
            ITIDIALWKF
Sbjct:   71 ITIDIALWKF 80

BLAST of BG733602 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.266e-21
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 2

Query:    2 DSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 157
            DSGKSTTTGHLIYK GGIDKR IE FEKEAAE+ K SFKYAWVLDKLKAERE
Sbjct:   17 DSGKSTTTGHLIYKCGGIDKRTIEEFEKEAAELGKGSFKYAWVLDKLKAERE 68

HSP 2 Score: 25.0238 bits (53), Expect = 3.266e-21
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 3

Query:  165 ITIDIALWKF 194
            ITIDIALWKF
Sbjct:   71 ITIDIALWKF 80

BLAST of BG733602 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.269e-21
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 2

Query:    2 DSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 157
            DSGKSTTTGHLIYKLGGIDKR IE+FEKE++EM K SFKYAWVLDKLKAERE
Sbjct:   17 DSGKSTTTGHLIYKLGGIDKRTIEKFEKESSEMGKGSFKYAWVLDKLKAERE 68

HSP 2 Score: 23.483 bits (49), Expect = 3.269e-21
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3

Query:  165 ITIDIALWKF 194
            ITIDIALW+F
Sbjct:   71 ITIDIALWQF 80

BLAST of BG733602 vs. ExPASy Swiss-Prot
Match: EF1A_SPOFR (Elongation factor 1-alpha (Fragment) OS=Spodoptera frugiperda PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.272e-21
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 2

Query:    2 DSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 157
            DSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERE
Sbjct:    3 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 54

HSP 2 Score: 25.0238 bits (53), Expect = 3.272e-21
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 3

Query:  165 ITIDIALWKF 194
            ITIDIALWKF
Sbjct:   57 ITIDIALWKF 66

BLAST of BG733602 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.272e-21
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 2

Query:    2 DSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 157
            DSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERE
Sbjct:    3 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 54

HSP 2 Score: 25.0238 bits (53), Expect = 3.272e-21
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 3

Query:  165 ITIDIALWKF 194
            ITIDIALWKF
Sbjct:   57 ITIDIALWKF 66

BLAST of BG733602 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.272e-21
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 2

Query:    2 DSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 157
            DSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERE
Sbjct:    3 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 54

HSP 2 Score: 25.0238 bits (53), Expect = 3.272e-21
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 3

Query:  165 ITIDIALWKF 194
            ITIDIALWKF
Sbjct:   57 ITIDIALWKF 66

The following BLAST results are available for this feature:

BLAST of BG733602 vs. ExPASy Swiss-Prot

BLAST of BG733602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103


Match Name	E-value	Identity	Description
EF1A_APIME	3.266e-21	88.46	Elongation factor 1-alpha OS=Apis mellifera PE=3 S...	[more]
EF1A4_OSCTI	3.266e-21	88.46	Elongation factor 1-alpha 4 OS=Oscheius tipulae GN...	[more]
EF1A3_OSCTI	3.266e-21	88.46	Elongation factor 1-alpha 3 OS=Oscheius tipulae GN...	[more]
EF1A2_OSCTI	3.266e-21	88.46	Elongation factor 1-alpha 2 OS=Oscheius tipulae GN...	[more]
EF1A1_OSCTI	3.266e-21	88.46	Elongation factor 1-alpha 1 OS=Oscheius tipulae GN...	[more]
EF1A1_RHIRA	3.266e-21	88.46	Elongation factor 1-alpha OS=Rhizomucor racemosus ...	[more]
EF1A_CRYPV	3.269e-21	88.46	Elongation factor 1-alpha OS=Cryptosporidium parvu...	[more]
EF1A_SPOFR	3.272e-21	88.46	Elongation factor 1-alpha (Fragment) OS=Spodoptera...	[more]
EF1A_HELZE	3.272e-21	88.46	Elongation factor 1-alpha (Fragment) OS=Heliothis ...	[more]
EF1A_HELVI	3.272e-21	88.46	Elongation factor 1-alpha (Fragment) OS=Heliothis ...	[more]

Pages

Properties


Property Name	Value
Genbank description	Cs-20d Citrus sinensis flavedo cells Citrus sinensis cDNA clone Cs-20d, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BG733602 ID=BG733602; Name=BG733602; organism=Citrus sinensis; type=EST; length=194bp
CGACTCTGGGAAGTCAACCACCACCGGTCACTTGATCTACAAGCTTGGAG
GTATTGACAAGCGTGTGATTGAGCGGTTTGAGAAGGAAGCTGCTGAGATG
AACAAGAGATCATTCAAGTACGCATGGGTGCTTGACAAGCTCAAGGCTGA
GCGTGAGCTCGCGTATCACCATTGATATTGCTTTGTGGAAGTTC