BG733610

Overview
NameBG733610
Unique NameBG733610
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length154
Libraries
Library NameType
Citrus sinensis flavedo cellscdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_SHEPC (ATP synthase subunit alpha OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 40/51 (78.43%), Postives = 48/51 (94.12%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            EV APG+IER+SV +P+QTG KAVD+++PIGRGQRELIIGDRQTGKTA+AI
Sbjct:  130 EVIAPGVIERQSVSQPVQTGYKAVDAMIPIGRGQRELIIGDRQTGKTAMAI 180          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_SHEB9 (ATP synthase subunit alpha OS=Shewanella baltica (strain OS195) GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 40/51 (78.43%), Postives = 48/51 (94.12%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            EV APG+IER+SV +P+QTG KAVD+++PIGRGQRELIIGDRQTGKTA+AI
Sbjct:  130 EVIAPGVIERQSVDQPVQTGYKAVDAMIPIGRGQRELIIGDRQTGKTAMAI 180          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_SHEB8 (ATP synthase subunit alpha OS=Shewanella baltica (strain OS185) GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 40/51 (78.43%), Postives = 48/51 (94.12%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            EV APG+IER+SV +P+QTG KAVD+++PIGRGQRELIIGDRQTGKTA+AI
Sbjct:  130 EVIAPGVIERQSVDQPVQTGYKAVDAMIPIGRGQRELIIGDRQTGKTAMAI 180          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_SHEB5 (ATP synthase subunit alpha OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 40/51 (78.43%), Postives = 48/51 (94.12%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            EV APG+IER+SV +P+QTG KAVD+++PIGRGQRELIIGDRQTGKTA+AI
Sbjct:  130 EVIAPGVIERQSVDQPVQTGYKAVDAMIPIGRGQRELIIGDRQTGKTAMAI 180          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_SHEB2 (ATP synthase subunit alpha OS=Shewanella baltica (strain OS223) GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 40/51 (78.43%), Postives = 48/51 (94.12%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            EV APG+IER+SV +P+QTG KAVD+++PIGRGQRELIIGDRQTGKTA+AI
Sbjct:  130 EVIAPGVIERQSVDQPVQTGYKAVDAMIPIGRGQRELIIGDRQTGKTAMAI 180          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_PSINU (ATP synthase subunit alpha, chloroplastic OS=Psilotum nudum GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIA 151
            E  APGII R+SV+EPMQTGL A+DS++PIGRGQRELIIGDRQTGKTA+A
Sbjct:  133 ESPAPGIISRRSVYEPMQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 182          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_POLSJ (ATP synthase subunit alpha OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            E  APG+I RKSV +P+QTGLK++DS+VP+GRGQRELIIGDRQTGKTA+AI
Sbjct:  135 EKVAPGVIARKSVDQPLQTGLKSIDSMVPVGRGQRELIIGDRQTGKTAVAI 185          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_PELTS (ATP synthase subunit alpha OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            EV APG+I RK VH+ +QTG+KAVDS++PIGRGQRELI+GDRQTGKTAIA+
Sbjct:  130 EVIAPGVIYRKPVHQALQTGIKAVDSMIPIGRGQRELILGDRQTGKTAIAV 180          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_OENOB (ATP synthase subunit alpha OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 38/51 (74.51%), Postives = 48/51 (94.12%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            E KAPG+++RKSV EP+QTG+K +D+LVPIGRGQRELIIGDR+TGKT++AI
Sbjct:  130 EFKAPGVMQRKSVFEPLQTGIKVIDALVPIGRGQRELIIGDRKTGKTSLAI 180          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_NEUCR (ATP synthase subunit alpha, mitochondrial OS=Neurospora crassa GN=atp-1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 38/51 (74.51%), Postives = 50/51 (98.04%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            ++KAPGI+ R+SV++P+QTGLK+VD++VPIGRGQRELIIGDRQTGKTA+A+
Sbjct:  171 QLKAPGILPRQSVNQPVQTGLKSVDAMVPIGRGQRELIIGDRQTGKTAVAL 221          
The following BLAST results are available for this feature:
BLAST of BG733610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_SHEPC1.209e-1678.43ATP synthase subunit alpha OS=Shewanella putrefaci... [more]
ATPA_SHEB91.209e-1678.43ATP synthase subunit alpha OS=Shewanella baltica (... [more]
ATPA_SHEB81.209e-1678.43ATP synthase subunit alpha OS=Shewanella baltica (... [more]
ATPA_SHEB51.209e-1678.43ATP synthase subunit alpha OS=Shewanella baltica (... [more]
ATPA_SHEB21.209e-1678.43ATP synthase subunit alpha OS=Shewanella baltica (... [more]
ATPA_PSINU1.209e-1680.00ATP synthase subunit alpha, chloroplastic OS=Psilo... [more]
ATPA_POLSJ1.209e-1676.47ATP synthase subunit alpha OS=Polaromonas sp. (str... [more]
ATPA_PELTS1.209e-1676.47ATP synthase subunit alpha OS=Pelotomaculum thermo... [more]
ATPA_OENOB1.209e-1674.51ATP synthase subunit alpha OS=Oenococcus oeni (str... [more]
ATPA_NEUCR1.209e-1674.51ATP synthase subunit alpha, mitochondrial OS=Neuro... [more]

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Properties
Property NameValue
Genbank descriptionCs-24b Citrus sinensis flavedo cells Citrus sinensis cDNA clone Cs-24b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BG733610 ID=BG733610; Name=BG733610; organism=Citrus sinensis; type=EST; length=154bp
CGAAGTGAAAGCCCCAGGGATTATTGAACGTAAATCTGTGCACGAGCCCA
TGCAAACGGGCTTAAAAGCGGTAGATAGTCTCGTTCCTATAGGCCGTGGT
CAACGAGAACTTATAATCGGGGACCGACAAACTGGAAAAACTGCTATTGC
TATC
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