BG733610

Overview
NameBG733610
Unique NameBG733610
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length154
Libraries
Library NameType
Citrus sinensis flavedo cellscdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_NANDO (ATP synthase subunit alpha, chloroplastic OS=Nandina domestica GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIA 151
            E  APGII R+SV+EPMQTGL A+DS++PIGRGQRELIIGDRQTGKTA+A
Sbjct:  131 ESPAPGIISRRSVYEPMQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 180          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_LEPCP (ATP synthase subunit alpha OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 40/51 (78.43%), Postives = 47/51 (92.16%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            E  APG+I RKSV +P+QTGLK++DS+VPIGRGQRELIIGDRQTGKTA+AI
Sbjct:  130 EKVAPGVIARKSVDQPVQTGLKSIDSMVPIGRGQRELIIGDRQTGKTAVAI 180          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_LEPBP (ATP synthase subunit alpha OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            E  APGI  RKSVHEPMQTG+KA+D+++PIGRGQRELIIGDR TGKT+IAI
Sbjct:  130 ESPAPGIAMRKSVHEPMQTGIKAIDAMIPIGRGQRELIIGDRGTGKTSIAI 180          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_LEPBA (ATP synthase subunit alpha OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            E  APGI  RKSVHEPMQTG+KA+D+++PIGRGQRELIIGDR TGKT+IAI
Sbjct:  130 ESPAPGIAMRKSVHEPMQTGIKAIDAMIPIGRGQRELIIGDRGTGKTSIAI 180          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_LACPL (ATP synthase subunit alpha OS=Lactobacillus plantarum GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 39/51 (76.47%), Postives = 49/51 (96.08%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            E KAPGI++R+SV EP+QTG+KA+D+LVPIGRGQRELIIGDR+TGKT++AI
Sbjct:  130 EHKAPGIMQRQSVSEPLQTGIKAIDALVPIGRGQRELIIGDRKTGKTSVAI 180          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_LACF3 (ATP synthase subunit alpha OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 39/51 (76.47%), Postives = 48/51 (94.12%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            E KAPG++ERKSV +P+QTG+K +D+LVPIGRGQRELIIGDR+TGKT+IAI
Sbjct:  130 ERKAPGVMERKSVSQPLQTGIKVIDALVPIGRGQRELIIGDRKTGKTSIAI 180          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_LACAC (ATP synthase subunit alpha OS=Lactobacillus acidophilus GN=atpA PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 37/51 (72.55%), Postives = 50/51 (98.04%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            E KAPG+++R+SV++P+QTG+KA+D+LVPIGRGQRELIIGDR+TGKT++AI
Sbjct:  130 EAKAPGVMDRQSVNQPLQTGIKAIDALVPIGRGQRELIIGDRKTGKTSLAI 180          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_ESCF3 (ATP synthase subunit alpha OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 40/51 (78.43%), Postives = 47/51 (92.16%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            E  APG+IER+SV +P+QTG KAVDS++PIGRGQRELIIGDRQTGKTA+AI
Sbjct:  130 EAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAI 180          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_ENTFA (ATP synthase subunit alpha OS=Enterococcus faecalis GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 39/51 (76.47%), Postives = 48/51 (94.12%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            E  APG+++R+SV EPMQTGLKA+D+LVPIGRGQREL+IGDR+TGKT+IAI
Sbjct:  130 EATAPGVMQRQSVAEPMQTGLKAIDALVPIGRGQRELVIGDRKTGKTSIAI 180          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_ECOUT (ATP synthase subunit alpha OS=Escherichia coli (strain UTI89 / UPEC) GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 40/51 (78.43%), Postives = 47/51 (92.16%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            E  APG+IER+SV +P+QTG KAVDS++PIGRGQRELIIGDRQTGKTA+AI
Sbjct:  130 EAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAI 180          
The following BLAST results are available for this feature:
BLAST of BG733610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_NANDO1.209e-1680.00ATP synthase subunit alpha, chloroplastic OS=Nandi... [more]
ATPA_LEPCP1.209e-1678.43ATP synthase subunit alpha OS=Leptothrix cholodnii... [more]
ATPA_LEPBP1.209e-1678.43ATP synthase subunit alpha OS=Leptospira biflexa s... [more]
ATPA_LEPBA1.209e-1678.43ATP synthase subunit alpha OS=Leptospira biflexa s... [more]
ATPA_LACPL1.209e-1676.47ATP synthase subunit alpha OS=Lactobacillus planta... [more]
ATPA_LACF31.209e-1676.47ATP synthase subunit alpha OS=Lactobacillus fermen... [more]
ATPA_LACAC1.209e-1672.55ATP synthase subunit alpha OS=Lactobacillus acidop... [more]
ATPA_ESCF31.209e-1678.43ATP synthase subunit alpha OS=Escherichia ferguson... [more]
ATPA_ENTFA1.209e-1676.47ATP synthase subunit alpha OS=Enterococcus faecali... [more]
ATPA_ECOUT1.209e-1678.43ATP synthase subunit alpha OS=Escherichia coli (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCs-24b Citrus sinensis flavedo cells Citrus sinensis cDNA clone Cs-24b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BG733610 ID=BG733610; Name=BG733610; organism=Citrus sinensis; type=EST; length=154bp
CGAAGTGAAAGCCCCAGGGATTATTGAACGTAAATCTGTGCACGAGCCCA
TGCAAACGGGCTTAAAAGCGGTAGATAGTCTCGTTCCTATAGGCCGTGGT
CAACGAGAACTTATAATCGGGGACCGACAAACTGGAAAAACTGCTATTGC
TATC
back to top