BG791315

Overview
NameBG791315
Unique NameBG791315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length226
Libraries
Library NameType
Citrus sinensis flavedo cellscdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10367 contig Csv1_Contig10367:586..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS_CLOBA (Formate--tetrahydrofolate ligase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=fhs PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.614e-11
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 2
Query:   32 LPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDV 226
            LPICMAKTQYS S N      P+GF + ++++R S GAGFI    G + TMPGLP  P   ++DV
Sbjct:  482 LPICMAKTQYSLSDNPNLLAKPSGFNINVQEIRVSNGAGFIVVQTGNIMTMPGLPKVPAANKMDV 546          
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS_DESAH (Formate--tetrahydrofolate ligase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=fhs PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.823e-11
Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 2
Query:   32 LPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDV 226
            L +CM KT  S S N + KG PTG+ L IR+V    GAGFI P+ GT+S MPG  + P F  +DV
Sbjct:  516 LGMCMVKTHLSLSDNPSLKGVPTGWRLMIREVLTYGGAGFIVPVAGTISLMPGTGSNPAFKRVDV 580          
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS_THESQ (Formate--tetrahydrofolate ligase OS=Thermotoga sp. (strain RQ2) GN=fhs PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.932e-11
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 2
Query:   20 GFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDV 226
            GF  LP+ +AKT  S SH+ + +GAP G+   + D+  S GAGF+  L G ++ MPGLP RP    +DV
Sbjct:  464 GFDELPVIVAKTPKSISHDPSLRGAPEGYTFVVSDLFVSAGAGFVVALSGDINLMPGLPERPNALNMDV 532          
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS_THEP1 (Formate--tetrahydrofolate ligase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=fhs PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.932e-11
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 2
Query:   20 GFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDV 226
            GF  LP+ +AKT  S SH+ + +GAP G+   + D+  S GAGF+  L G ++ MPGLP RP    +DV
Sbjct:  464 GFDELPVIVAKTPKSISHDPSLRGAPEGYTFVVSDLFVSAGAGFVVALSGDINLMPGLPERPNALNMDV 532          
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS_DESPS (Formate--tetrahydrofolate ligase OS=Desulfotalea psychrophila GN=fhs PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.932e-11
Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = 2
Query:   32 LPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDV 226
            L  CM KT  S SH+   KG P G+ LPIRD+    GAGF+ P+ G +S MPG  + P +  +DV
Sbjct:  482 LGTCMVKTHLSLSHDPKLKGVPKGWTLPIRDILTYKGAGFVVPVAGAISLMPGTGSDPAYRRVDV 546          
The following BLAST results are available for this feature:
BLAST of BG791315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
FTHS_CLOBA2.614e-1150.77Formate--tetrahydrofolate ligase OS=Clostridium bo... [more]
FTHS_DESAH5.823e-1150.77Formate--tetrahydrofolate ligase OS=Desulfobacteri... [more]
FTHS_THESQ9.932e-1144.93Formate--tetrahydrofolate ligase OS=Thermotoga sp.... [more]
FTHS_THEP19.932e-1144.93Formate--tetrahydrofolate ligase OS=Thermotoga pet... [more]
FTHS_DESPS9.932e-1146.15Formate--tetrahydrofolate ligase OS=Desulfotalea p... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCs-31d Citrus sinensis flavedo cells Citrus sinensis cDNA clone Cs-31d, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BG791315 ID=BG791315; Name=BG791315; organism=Citrus sinensis; type=EST; length=226bp
CGAAATGTACACCGGGCAAGGGTTTTCTGGCTTACCAATTTGCATGGCAA
AAACCCAGTATTCATTTTCACACAATGCCGCCGAGAAGGGAGCCCCAACT
GGGTTTATCTTACCGATAAGGGATGTAAGAGCTAGCATTGGGGCTGGATT
CATTTATCCTTTGGTTGGAACAATGAGTACAATGCCAGGTCTCCCAACAA
GGCCATGCTTTTACGAGATTGATGTC
back to top