BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_STAES (30S ribosomal protein S9 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.707e-27
Identity = 64/124 (51.61%), Postives = 82/124 (66.13%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++ARV L  G G   +N RD ++YL    L L  +  P      + +YDV V  HGGG +GQAQAI  G+ARALL+   ++R  LK+ GLLTRD R+ ERKK GL KAR++PQ+SKR
Sbjct:    8 GTGRRKNSVARVRLVPGEGNITVNERDVRDYLPFESLILD-LNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKKARRSPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_STAEQ (30S ribosomal protein S9 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.707e-27
Identity = 64/124 (51.61%), Postives = 82/124 (66.13%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++ARV L  G G   +N RD ++YL    L L  +  P      + +YDV V  HGGG +GQAQAI  G+ARALL+   ++R  LK+ GLLTRD R+ ERKK GL KAR++PQ+SKR
Sbjct:    8 GTGRRKNSVARVRLVPGEGNITVNERDVRDYLPFESLILD-LNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKKARRSPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_HAHCH (30S ribosomal protein S9 OS=Hahella chejuensis (strain KCTC 2396) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.707e-27
Identity = 64/125 (51.20%), Postives = 82/125 (65.60%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK + ARV L+ G+GK  +N  D   Y  G       ++ PL  LG   ++DVFV   GGG SGQA AI  G+ RAL++  + +RSPL+K G +TRD+R VERKK GL KARK PQ+SKR
Sbjct:    7 YGTGRRKTSTARVFLRPGSGKITVNQTDLDSYF-GRETARMVVRQPLELLGSIGNFDVFVTVKGGGPSGQAGAIRHGITRALIQYDEANRSPLRKAGYVTRDAREVERKKVGLRKARKRPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_DEIDV (30S ribosomal protein S9 OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.707e-27
Identity = 65/128 (50.78%), Postives = 87/128 (67.97%), Query Frame = 2
Query:   98 QTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +  +GTGRRK A+ARV L+ G GK I+N ++ + Y +G    +  ++    T G    YD  +  +GGG +GQA AI LG+ARALLKV+ D R+ +K +GLLTRD R VERKK GL KAR+APQ+SKR
Sbjct:    7 EQFYGTGRRKSAVARVFLRPGEGKIIVNGKEFQTYFRGLLRAVHALQAFRET-GTAGRYDAVITVNGGGPTGQADAIKLGIARALLKVNPDFRAQMKPKGLLTRDPREVERKKYGLKKARRAPQFSKR 133          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RR9_NEPOL (30S ribosomal protein S9, chloroplastic OS=Nephroselmis olivacea GN=rps9 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.707e-27
Identity = 66/123 (53.66%), Postives = 79/123 (64.23%), Query Frame = 2
Query:  113 TGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            TGRRKCA+A+V + EGTG+  IN R    YLQ NP +L   +  L        YD  VK  GGGL+GQA+AI LG+ARAL  +   HR  LK +G LTR+    ERKK GL KARKAPQ+SKR
Sbjct:   12 TGRRKCAVAQVRIIEGTGQLTINQRPGVPYLQYNPAYLLAAQGALDVTELTNRYDTIVKTKGGGLTGQAEAIKLGLARALCSLHIKHRKALKPQGYLTRNPLRKERKKYGLKKARKAPQFSKR 134          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PHYAS (30S ribosomal protein S9 OS=Phytoplasma australiense GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.007e-26
Identity = 68/124 (54.84%), Postives = 84/124 (67.74%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK A+ARV+L  GTGK  IN ++ + YL      L  ++ PL+    +  YDV V  +GGGL  QA AI LG+ARALL+   + R  LKK GLLTRD+R VERKK GL KAR+APQ+SKR
Sbjct:    8 GTGRRKTAVARVILTNGTGKITINTKNFETYLPQPTTRLDMLQ-PLIISEKKDVYDVRVNVNGGGLCAQAGAIRLGIARALLESIPELRPVLKKAGLLTRDARCVERKKYGLKKARRAPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_MESFL (30S ribosomal protein S9 OS=Mesoplasma florum GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.007e-26
Identity = 64/124 (51.61%), Postives = 83/124 (66.94%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++A+V+L  G G  I+N   A E+    P  +Q ++ PLV  G E  +D+ V   GGG +GQA A  LG+ARALL  S+D+R  L+  GLLTRD+R+ ERKK GL  AR+APQYSKR
Sbjct:    9 GTGRRKTSVAQVILTPGKGNIIVNGVPALEFFP-YPTLVQDLEQPLVATGTEKDFDITVTVKGGGFTGQAGATRLGIARALLVASEDYRKGLRAVGLLTRDARIKERKKYGLRGARRAPQYSKR 131          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_EXISA (30S ribosomal protein S9 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.007e-26
Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV L  G GK ++N RD  EY  G+   +   K PLV    E  YDV V  +GGG +GQA AI  GV+RALL+   + R  LK++G LTRD+R+ ERKK GL  AR+APQ+SKR
Sbjct:    7 YGTGRRKHSVARVHLVAGDGKVVVNGRDISEYF-GHETLIMMAKSPLVLTETEGKYDVIVNVNGGGYTGQAGAIRHGVSRALLQADPEFRPSLKEKGFLTRDARMKERKKYGLKAARRAPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_UREPA (30S ribosomal protein S9 OS=Ureaplasma parvum GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.315e-26
Identity = 64/124 (51.61%), Postives = 86/124 (69.35%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            G GRRK +IARV L  G+GK ++N R  + Y   N L +Q +  PLV      +YDV+VK  GGG +GQA AI LG+ RAL++  +D ++ L+K GL+TRDSRV ERKK GL+ AR+APQ++KR
Sbjct:   11 GLGRRKSSIARVKLVPGSGKVLVNDRQPENYFP-NKLVIQDMMQPLVLTKTAETYDVYVKVIGGGFNGQAGAIRLGITRALIQTREDLKTDLRKAGLVTRDSRVKERKKFGLYGARRAPQFTKR 133          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_UREP2 (30S ribosomal protein S9 OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.315e-26
Identity = 64/124 (51.61%), Postives = 86/124 (69.35%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            G GRRK +IARV L  G+GK ++N R  + Y   N L +Q +  PLV      +YDV+VK  GGG +GQA AI LG+ RAL++  +D ++ L+K GL+TRDSRV ERKK GL+ AR+APQ++KR
Sbjct:   11 GLGRRKSSIARVKLVPGSGKVLVNDRQPENYFP-NKLVIQDMMQPLVLTKTAETYDVYVKVIGGGFNGQAGAIRLGITRALIQTREDLKTDLRKAGLVTRDSRVKERKKFGLYGARRAPQFTKR 133          
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_STAES7.707e-2751.6130S ribosomal protein S9 OS=Staphylococcus epiderm... [more]
RS9_STAEQ7.707e-2751.6130S ribosomal protein S9 OS=Staphylococcus epiderm... [more]
RS9_HAHCH7.707e-2751.2030S ribosomal protein S9 OS=Hahella chejuensis (st... [more]
RS9_DEIDV7.707e-2750.7830S ribosomal protein S9 OS=Deinococcus deserti (s... [more]
RR9_NEPOL7.707e-2753.6630S ribosomal protein S9, chloroplastic OS=Nephros... [more]
RS9_PHYAS1.007e-2654.8430S ribosomal protein S9 OS=Phytoplasma australien... [more]
RS9_MESFL1.007e-2651.6130S ribosomal protein S9 OS=Mesoplasma florum GN=r... [more]
RS9_EXISA1.007e-2652.0030S ribosomal protein S9 OS=Exiguobacterium sp. (s... [more]
RS9_UREPA1.315e-2651.6130S ribosomal protein S9 OS=Ureaplasma parvum GN=r... [more]
RS9_UREP21.315e-2651.6130S ribosomal protein S9 OS=Ureaplasma parvum sero... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
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