BQ622931

Overview
NameBQ622931
Unique NameBQ622931
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.205e-11
Identity = 46/158 (29.11%), Postives = 74/158 (46.84%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELAT 467
            W+ GP L EALD+I    R    P R+P+ D +K   +GTV +G+VE+G ++ G  +   P     +V ++      +  A PG+N+   +  +  +D+  G+V S S   P      F AQ+ I+        + GY  VL  H      +  E+ T
Sbjct:  210 WYKGPTLLEALDQINEPKRPSEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMN--HPGQISNGYAPVLDCHTSHIAVKFAEIQT 365          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_SPOFR (Elongation factor 1-alpha (Fragment) OS=Spodoptera frugiperda PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.574e-11
Identity = 46/172 (26.74%), Postives = 81/172 (47.09%), Query Frame = 3
Query:   12 GPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL-SSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELATS-NRSEDQETHEKESSL 515
            G CL EALD I    R  + P R+P+ D +K   +GTV +G+VE+G ++ G  ++  P     +V ++      ++ A PG+N+   +  +  +++  G+V   S   P     +F AQ+ +L        + GY  VL  H     C+  E+    +R   + T +   S+
Sbjct:  211 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN--HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSI 380          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.574e-11
Identity = 48/171 (28.07%), Postives = 79/171 (46.20%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELATSNRSEDQETHEKE 506
            W+ GP L EALD+I+   R  + P R+P+ D +K   +GTV +G+VE+G ++ G  +   P     +V ++      ++ A PG+N+   +  +  +D+  G V S S   P      F +Q+ I+          GY  VL  H      +  E+ T       +  EKE
Sbjct:  210 WYKGPTLLEALDQIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGIVASNSKDDPAKEAANFTSQVIIMN--HPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKE 378          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.056e-11
Identity = 49/171 (28.65%), Postives = 76/171 (44.44%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELATSNRSEDQETHEKE 506
            W+ GP L +ALD I    R  + P R+P+ D +K   +G V +G+VE+G V+ G  +   P     +V ++      +  A PG+N+   +  +  +D+  GFV S S   P      F +Q+ I+          GY  VL  H      +  EL T       +  EKE
Sbjct:  210 WYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGIVPVGRVETGVVKPGMLVTFAPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMN--HPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKE 378          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.056e-11
Identity = 48/153 (31.37%), Postives = 72/153 (47.06%), Query Frame = 3
Query:   12 GPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            G  L EALD I +  R  + P R+P+ D +K   +GTV +G+VE+G ++ G  +   P     +V ++      +  A PG+N+   +  +  +DI  G V S S   P      F AQ+ IL         AGY+ VL  H     C+  EL
Sbjct:  227 GKTLLEALDNIPLPARPSSKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFCPANLSTEVKSVEMHHESLPEALPGDNVGFNVKNVSIKDIRRGMVASDSKNDPAIEAASFKAQVIILN--HPGEIHAGYQPVLDCHTAHIACKFAEL 377          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_BLAHO (Elongation factor 1-alpha OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.685e-11
Identity = 41/155 (26.45%), Postives = 73/155 (47.10%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ GP L EALD +    R  + P R+P+ D +K   +GTV +G+VE+G ++ G ++   P     +V ++      +  A PG+N+   ++ +  EDI  G V           TE  +  Q++ +   +    GY  V+  H     C+  ++
Sbjct:  212 WYKGPTLLEALDNVHPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMTVTFAPVNVSTEVKSVEMHHESIPQALPGDNVGFNVNNVSVEDIHRGNVCGDAKNDPPCKTE--SDAQVIVMNHPSGIRPGYCPVVDCHTAHIACKFEKI 364          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A3_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-3 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.507e-11
Identity = 52/169 (30.77%), Postives = 77/169 (45.56%), Query Frame = 3
Query:   12 GPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL--ATSNRSEDQETHEK 503
            G  L EA+D IE   R  + P R+P+ D +K   +GTV +G+VE+G+++ G  +   P     +V ++      +    PG+N+   +  +  +DI  G V S S   P      F AQ+ IL        +AGY  VL  H     C+  EL      RSE  E   K
Sbjct:  223 GKTLLEAIDAIEPPVRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGTIKAGMVVNFAPAAVTTEVKSVEMHHETLTEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILN--HPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSEKMEDSPK 389          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.507e-11
Identity = 45/158 (28.48%), Postives = 74/158 (46.84%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELAT 467
            W+ GP L EALD+I    R  + P  +P+ D +K   +GTV +G+VE+G ++ G  +   P     +V ++      +  A PG+N+   +  +  +D+  G+V S S   P      F AQ+ I+        + GY  VL  H      +  E+ T
Sbjct:  210 WYKGPTLLEALDQINEPKRPSDKPLHLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEVHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMN--HPGQISNGYAPVLDCHTSHIAVKFAEIQT 365          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_NEUCR (Elongation factor 1-alpha OS=Neurospora crassa GN=tef-1 PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 45/153 (29.41%), Postives = 72/153 (47.06%), Query Frame = 3
Query:   12 GPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL-SSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            G  L EA+D IE   R  + P R+P+ D +K   +GTV +G++E+G ++ G  +   P+    +V ++     ++    PG+N+   +  +  +DI  G V   S   P A    F AQ+ +L         AGY  VL  H     C+  EL
Sbjct:  224 GKTLLEAIDAIEPPKRPTDKPLRLPLQDVYKIGGIGTVPVGRIETGVLKPGMVVTFAPSNVTTEVKSVEMHHEQLAQGVPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPAGAASFTAQVIVLN--HPGQVGAGYAPVLDCHTAHIACKFAEL 374          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 45/153 (29.41%), Postives = 72/153 (47.06%), Query Frame = 3
Query:   12 GPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            G  L +A+D IE   R  + P R+P+ D +K   +GTV +G+VE+G ++ G  +   P+    +V ++     ++    PG+N+   +  +  +DI  G V S S   P      F AQ+ +L         AGY  VL  H     C+  EL
Sbjct:  223 GKTLLDAIDAIEPPVRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKAGMVVTFAPSNVTTEVKSVEMHHEQLAEGKPGDNVGFNVKNVSVKDIRRGNVASDSKNDPAKEAASFNAQVIVLN--HPGQIGAGYAPVLDCHTAHIACKFAEL 373          
The following BLAST results are available for this feature:
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
EF1A2_HORVU1.205e-1129.11Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A_SPOFR1.574e-1126.74Elongation factor 1-alpha (Fragment) OS=Spodoptera... [more]
EF1A_MANES1.574e-1128.07Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_VICFA2.056e-1128.65Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_HYDAT2.056e-1131.37Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A_BLAHO2.685e-1126.45Elongation factor 1-alpha OS=Blastocystis hominis ... [more]
EF1A3_RHIRA3.507e-1130.77Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A1_HORVU3.507e-1128.48Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A_NEUCR5.982e-1129.41Elongation factor 1-alpha OS=Neurospora crassa GN=... [more]
EF1A_SCHCO7.813e-1129.41Elongation factor 1-alpha OS=Schizophyllum commune... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00022 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00022 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622931 ID=BQ622931; Name=BQ622931; organism=Citrus sinensis; type=EST; length=523bp
CATGGTGGAATGGCCCCTGTCTTTTTGAAGCCCTTGATCGTATTGAGATA
ACTCCTCGAGATCCTAATGGTCCATTTAGGATGCCTATAATTGACAAATT
CAAGGACATGGGAACTGTTGTTATGGGGAAGGTGGAATCTGGTAGTGTAC
GGGAGGGGGATTCCTTGTTGGTCATGCCAAACAAGGCTCAAGTTAAAGTT
CTGGCCATATACTGTGATGACAATAGGGTTAGGCATGCAGGACCCGGTGA
AAATCTACGGATCAGATTATCTGGAATTGAAGAGGAAGATATACTATCTG
GTTTTGTCTTGTCAAGTGTTGCAAAACCAGTAGCCGCAGTCACTGAATTT
ATTGCCCAGTTGCAGATTCTTGAGTTGCTGGACAATGCAATTTTTACGGC
CGGCTACAAGGCTGTTTTACACATTCATGCTGTTGTCGAGGAATGTGAGA
TTGTTGAACTTGCTACATCAAATCGATCTGAAGACCAAGAAACCCATGAA
AAAGAAAGTTCTCTTTGGTAAGA
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