BQ622946

Overview
NameBQ622946
Unique NameBQ622946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11256 contig Csv1_Contig11256:411..958. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.483e-13
Identity = 50/143 (34.97%), Postives = 66/143 (46.15%), Query Frame = 3
Query:   27 WYDAGKAEYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPTDEAKEK----ELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSGN 407
            W DAGK E    SS           TL  IE ++  Y+E +R  ++ +   +                 YPGG  F+PL  A     K +    E+ + RLAM+ FLGF VQ   TGKGP  N   H+SDP H TI+ T S +
Sbjct:  162 WQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRL-----------------YPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 287          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.483e-13
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSG 404
            +PGG F+PL  A   E     K KE+ NGRLAM A LGF +Q  VTG+GP ENL +H+SDP+ N ++  ++G
Sbjct:  201 HPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAG 272          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.352e-13
Identity = 38/64 (59.38%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H+SDP +N
Sbjct:  192 YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNN 255          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 38/64 (59.38%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  HI+DP +N
Sbjct:  186 YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 249          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.595e-12
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  189 YPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.083e-12
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HI+DP +N
Sbjct:  191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.083e-12
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HI+DP +N
Sbjct:  191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.083e-12
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  180 YPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 243          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.083e-12
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  193 YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 256          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.083e-12
Identity = 38/64 (59.38%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   EA    K KEL  GRLAML+  GF VQ  VTGKGP ENL  HI+DP +N
Sbjct:  189 YPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNN 252          
The following BLAST results are available for this feature:
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB4B_ARATH5.483e-1334.97Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB26_ARATH5.483e-1350.00Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB28_PEA9.352e-1359.38Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_MAIZE1.221e-1259.38Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB29_MAIZE1.595e-1257.81Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB2F_SOLLC2.083e-1257.81Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.083e-1257.81Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB22_SOYBN2.083e-1257.81Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_PEA2.083e-1257.81Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB22_MAIZE2.083e-1259.38Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00037 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00037 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622946 ID=BQ622946; Name=BQ622946; organism=Citrus sinensis; type=EST; length=548bp
AGATTGGAATTATTAATGCTCCTCAATGGTATGATGCTGGGAAGGCTGAG
TACTTTGCATCATCATCGACCCTTTTCGTGATCGAGTTCATCTTGTTCCA
CTATGTGGAGATAAGAAGATGGCAAGACATAAAGAACCCAGGAAGTGTCA
ACCAAGACCCCATTTTCAAGCAGTACAGCTTGCCTCCAAACGAAGTTGGG
TACCCCGGTGGCATCTTCAACCCACTCAACTTTGCACCCACTGACGAGGC
AAAGGAGAAGGAGCTTGCCAATGGGAGATTGGCAATGTTGGCATTCTTGG
GATTTATTGTTCAGCACAATGTGACAGGCAAAGGGCCATTTGAAAACCTC
CTGCAACACATCTCTGACCCATGGCACAACACCATCGTCCAGACACTAAG
TGGTAATTAATCAAAGATGGATTGGCCATCCCGGATCCTGTTTCTTTCTT
TTGTAACCATGAATCTGTAGTTTTTGAGTGAGATTTGAGCATCAATGTAA
ACATGGAAACTCTCAATGTACAGGGGAACTATGATGGTATTTATATTA
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