BQ622946

Overview
NameBQ622946
Unique NameBQ622946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11256 contig Csv1_Contig11256:411..958. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.554e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  185 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 248          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.554e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  190 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.554e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  190 YPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.554e-12
Identity = 37/64 (57.81%), Postives = 41/64 (64.06%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HI+DP  N
Sbjct:  188 YPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVAN 251          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP +NL+ H++DP +N
Sbjct:  191 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNN 254          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 36/64 (56.25%), Postives = 41/64 (64.06%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:  189 YPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVAN 252          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 37/64 (57.81%), Postives = 41/64 (64.06%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HI+DP  N
Sbjct:  161 YPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVAN 224          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 37/64 (57.81%), Postives = 41/64 (64.06%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HI+DP  N
Sbjct:  189 YPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVAN 252          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  188 YPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 251          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.062e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  201 YPGGIFNPLNFAP----TDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A     + E K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  188 YPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 251          
The following BLAST results are available for this feature:
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB22_ORYSJ3.554e-1256.25Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_TOBAC3.554e-1256.25Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_SINAL3.554e-1256.25Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_LEMGI3.554e-1257.81Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB27_TOBAC4.641e-1254.69Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB26_PETSP4.641e-1256.25Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC4.641e-1257.81Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB24_SOLLC4.641e-1257.81Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB22_HORVU4.641e-1256.25Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_APIGR6.062e-1256.25Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00037 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00037 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622946 ID=BQ622946; Name=BQ622946; organism=Citrus sinensis; type=EST; length=548bp
AGATTGGAATTATTAATGCTCCTCAATGGTATGATGCTGGGAAGGCTGAG
TACTTTGCATCATCATCGACCCTTTTCGTGATCGAGTTCATCTTGTTCCA
CTATGTGGAGATAAGAAGATGGCAAGACATAAAGAACCCAGGAAGTGTCA
ACCAAGACCCCATTTTCAAGCAGTACAGCTTGCCTCCAAACGAAGTTGGG
TACCCCGGTGGCATCTTCAACCCACTCAACTTTGCACCCACTGACGAGGC
AAAGGAGAAGGAGCTTGCCAATGGGAGATTGGCAATGTTGGCATTCTTGG
GATTTATTGTTCAGCACAATGTGACAGGCAAAGGGCCATTTGAAAACCTC
CTGCAACACATCTCTGACCCATGGCACAACACCATCGTCCAGACACTAAG
TGGTAATTAATCAAAGATGGATTGGCCATCCCGGATCCTGTTTCTTTCTT
TTGTAACCATGAATCTGTAGTTTTTGAGTGAGATTTGAGCATCAATGTAA
ACATGGAAACTCTCAATGTACAGGGGAACTATGATGGTATTTATATTA
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