BQ622946

Overview
NameBQ622946
Unique NameBQ622946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11256 contig Csv1_Contig11256:411..958. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-12
Identity = 36/61 (59.02%), Postives = 40/61 (65.57%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 371
            YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP
Sbjct:  189 YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 249          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-12
Identity = 36/64 (56.25%), Postives = 40/64 (62.50%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A       E K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:  187 YPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVAN 250          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-12
Identity = 36/64 (56.25%), Postives = 40/64 (62.50%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A       E K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:  187 YPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVAN 250          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-12
Identity = 36/64 (56.25%), Postives = 41/64 (64.06%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   EA    K KEL NGRLAM +  GF V   VTGKGP ENL  H++DP +N
Sbjct:  152 YPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNN 215          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.034e-11
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   +A    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  202 YPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNN 265          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.034e-11
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   +A    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  202 YPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNN 265          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.034e-11
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   EA    + KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  190 YPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.034e-11
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   +A    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:  189 YPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVAN 252          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.350e-11
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   EA    K K + NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  191 YPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254          
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.350e-11
Identity = 36/64 (56.25%), Postives = 41/64 (64.06%), Query Frame = 3
Query:  201 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 380
            YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++ P +N
Sbjct:  187 YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNN 250          
The following BLAST results are available for this feature:
BLAST of BQ622946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB23_POLMU7.917e-1259.02Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB23_ORYSJ7.917e-1256.25Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI7.917e-1256.25Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA7.917e-1256.25Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2A_PYRPY1.034e-1154.69Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY1.034e-1154.69Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB21_PETSP1.034e-1154.69Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_GOSHI1.034e-1154.69Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB25_TOBAC1.350e-1154.69Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB23_SOYBN1.350e-1156.25Chlorophyll a-b binding protein 3, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00037 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00037 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622946 ID=BQ622946; Name=BQ622946; organism=Citrus sinensis; type=EST; length=548bp
AGATTGGAATTATTAATGCTCCTCAATGGTATGATGCTGGGAAGGCTGAG
TACTTTGCATCATCATCGACCCTTTTCGTGATCGAGTTCATCTTGTTCCA
CTATGTGGAGATAAGAAGATGGCAAGACATAAAGAACCCAGGAAGTGTCA
ACCAAGACCCCATTTTCAAGCAGTACAGCTTGCCTCCAAACGAAGTTGGG
TACCCCGGTGGCATCTTCAACCCACTCAACTTTGCACCCACTGACGAGGC
AAAGGAGAAGGAGCTTGCCAATGGGAGATTGGCAATGTTGGCATTCTTGG
GATTTATTGTTCAGCACAATGTGACAGGCAAAGGGCCATTTGAAAACCTC
CTGCAACACATCTCTGACCCATGGCACAACACCATCGTCCAGACACTAAG
TGGTAATTAATCAAAGATGGATTGGCCATCCCGGATCCTGTTTCTTTCTT
TTGTAACCATGAATCTGTAGTTTTTGAGTGAGATTTGAGCATCAATGTAA
ACATGGAAACTCTCAATGTACAGGGGAACTATGATGGTATTTATATTA
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